data_5UC6 # _model_server_result.job_id j9BaEz-SsWsSan0eXSjnsg _model_server_result.datetime_utc '2024-10-18 08:51:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5UC6 # _exptl.entry_id 5UC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UC6 _cell.length_a 74.79 _cell.length_b 74.79 _cell.length_c 86.36 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 2 B DG 2 1_555 B P 85Y 3 B 85Y 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale2 B O3' 85Y 3 B 85Y 3 1_555 B P DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale3 B O3' DG 6 B DG 6 1_555 B P 85Y 7 B 85Y 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale4 B O3' 85Y 7 B 85Y 7 1_555 B P 85Y 8 B 85Y 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale5 B O3' 85Y 8 B 85Y 8 1_555 B P DA 9 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale6 B O3' DA 9 B DA 9 1_555 B P 85Y 10 B 85Y 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? covale ? covale7 B O3' 85Y 10 B 85Y 10 1_555 B P DG 11 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? covale ? covale8 B O3' DG 13 B DG 13 1_555 B P 85Y 14 B 85Y 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.561 ? covale ? covale9 B O3' 85Y 14 B 85Y 14 1_555 B P 85Y 15 B 85Y 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale10 B O3' 85Y 15 B 85Y 15 1_555 B P DA 16 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale11 B O3' DG 19 B DG 19 1_555 B P 85Y 20 B 85Y 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? covale ? covale12 B O3' 85Y 20 B 85Y 20 1_555 B P DC 21 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? covale ? covale13 B O3' DG 22 B DG 22 1_555 H P PO4 . B PO4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? metalc ? metalc1 A O LYS 11 A LYS 11 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc2 A OD1 ASP 64 A ASP 64 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc3 A O ASP 65 A ASP 65 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 A O VAL 90 A VAL 90 1_555 F MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc5 A O ASN 108 A ASN 108 1_555 G MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc6 A O LEU 110 A LEU 110 1_555 G MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc7 A OG SER 124 A SER 124 1_555 G MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc8 A O ILE 132 A ILE 132 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc9 A O VAL 140 A VAL 140 1_555 F MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc10 A O THR 150 A THR 150 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc11 D NA NA . A NA 202 1_555 I O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc12 D NA NA . A NA 202 1_555 B O21 85Y 7 B 85Y 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc13 D NA NA . A NA 202 1_555 J O HOH . B HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc14 D NA NA . A NA 202 1_555 J O HOH . B HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 1 1_555 B N1 DG 22 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 1 1_555 B O6 DG 22 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 1 1_555 B N2 DG 22 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 B DG 2 1_555 B N3 DC 21 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 B DG 2 1_555 B O2 DC 21 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 B DG 2 1_555 B N4 DC 21 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog7 B N3 85Y 3 B 85Y 3 1_555 B N7 DA 16 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog8 B O2 85Y 3 B 85Y 3 1_555 B N6 DA 16 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog9 B N2 DG 4 B DG 4 1_555 B N3 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog10 B N3 DG 4 B DG 4 1_555 B N2 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog11 B N1 DG 4 B DG 4 1_555 B N7 DG 19 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog12 B N2 DG 4 B DG 4 1_555 B O6 DG 19 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_2_PAIR hydrog13 B N6 DA 5 B DA 5 1_555 B N7 DA 18 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_2_PAIR hydrog14 B N7 DA 5 B DA 5 1_555 B N6 DA 18 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_3_PAIR hydrog15 B N1 DG 6 B DG 6 1_555 B O6 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_3_PAIR hydrog16 B O6 DG 6 B DG 6 1_555 B N1 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 85Y 8 B 85Y 8 1_555 B N1 DA 16 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 85Y 8 B 85Y 8 1_555 B N6 DA 16 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DA 9 B DA 9 1_555 B N3 85Y 15 B 85Y 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N6 DA 9 B DA 9 1_555 B O4 85Y 15 B 85Y 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5UC6 _atom_sites.fract_transf_matrix[1][1] 0.013371 _atom_sites.fract_transf_matrix[1][2] 0.00772 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 201 1 MG MG . D 4 NA A 1 202 2 NA NA . E 3 MG A 1 203 3 MG MG . F 3 MG A 1 204 4 MG MG . G 3 MG A 1 205 5 MG MG . H 5 PO4 B 1 101 23 PO4 PO3 . I 6 HOH A 1 301 131 HOH HOH . I 6 HOH A 2 302 76 HOH HOH . I 6 HOH A 3 303 89 HOH HOH . I 6 HOH A 4 304 69 HOH HOH . I 6 HOH A 5 305 102 HOH HOH . I 6 HOH A 6 306 35 HOH HOH . I 6 HOH A 7 307 130 HOH HOH . I 6 HOH A 8 308 121 HOH HOH . I 6 HOH A 9 309 28 HOH HOH . I 6 HOH A 10 310 10 HOH HOH . I 6 HOH A 11 311 21 HOH HOH . I 6 HOH A 12 312 137 HOH HOH . I 6 HOH A 13 313 100 HOH HOH . I 6 HOH A 14 314 68 HOH HOH . I 6 HOH A 15 315 4 HOH HOH . I 6 HOH A 16 316 140 HOH HOH . I 6 HOH A 17 317 111 HOH HOH . I 6 HOH A 18 318 27 HOH HOH . I 6 HOH A 19 319 55 HOH HOH . I 6 HOH A 20 320 17 HOH HOH . I 6 HOH A 21 321 30 HOH HOH . I 6 HOH A 22 322 53 HOH HOH . I 6 HOH A 23 323 94 HOH HOH . I 6 HOH A 24 324 3 HOH HOH . I 6 HOH A 25 325 80 HOH HOH . I 6 HOH A 26 326 1 HOH HOH . I 6 HOH A 27 327 96 HOH HOH . I 6 HOH A 28 328 105 HOH HOH . I 6 HOH A 29 329 75 HOH HOH . I 6 HOH A 30 330 32 HOH HOH . I 6 HOH A 31 331 85 HOH HOH . I 6 HOH A 32 332 45 HOH HOH . I 6 HOH A 33 333 19 HOH HOH . I 6 HOH A 34 334 59 HOH HOH . I 6 HOH A 35 335 38 HOH HOH . I 6 HOH A 36 336 41 HOH HOH . I 6 HOH A 37 337 44 HOH HOH . I 6 HOH A 38 338 40 HOH HOH . I 6 HOH A 39 339 79 HOH HOH . I 6 HOH A 40 340 7 HOH HOH . I 6 HOH A 41 341 115 HOH HOH . I 6 HOH A 42 342 34 HOH HOH . I 6 HOH A 43 343 22 HOH HOH . I 6 HOH A 44 344 120 HOH HOH . I 6 HOH A 45 345 8 HOH HOH . I 6 HOH A 46 346 119 HOH HOH . I 6 HOH A 47 347 57 HOH HOH . I 6 HOH A 48 348 128 HOH HOH . I 6 HOH A 49 349 127 HOH HOH . I 6 HOH A 50 350 87 HOH HOH . I 6 HOH A 51 351 11 HOH HOH . I 6 HOH A 52 352 47 HOH HOH . I 6 HOH A 53 353 18 HOH HOH . I 6 HOH A 54 354 109 HOH HOH . I 6 HOH A 55 355 39 HOH HOH . I 6 HOH A 56 356 97 HOH HOH . I 6 HOH A 57 357 5 HOH HOH . I 6 HOH A 58 358 33 HOH HOH . I 6 HOH A 59 359 113 HOH HOH . I 6 HOH A 60 360 125 HOH HOH . I 6 HOH A 61 361 46 HOH HOH . I 6 HOH A 62 362 61 HOH HOH . I 6 HOH A 63 363 37 HOH HOH . I 6 HOH A 64 364 13 HOH HOH . I 6 HOH A 65 365 123 HOH HOH . I 6 HOH A 66 366 26 HOH HOH . I 6 HOH A 67 367 29 HOH HOH . I 6 HOH A 68 368 103 HOH HOH . I 6 HOH A 69 369 138 HOH HOH . I 6 HOH A 70 370 6 HOH HOH . I 6 HOH A 71 371 122 HOH HOH . I 6 HOH A 72 372 133 HOH HOH . I 6 HOH A 73 373 135 HOH HOH . I 6 HOH A 74 374 116 HOH HOH . I 6 HOH A 75 375 134 HOH HOH . I 6 HOH A 76 376 64 HOH HOH . I 6 HOH A 77 377 126 HOH HOH . I 6 HOH A 78 378 110 HOH HOH . I 6 HOH A 79 379 74 HOH HOH . I 6 HOH A 80 380 101 HOH HOH . I 6 HOH A 81 381 118 HOH HOH . I 6 HOH A 82 382 65 HOH HOH . I 6 HOH A 83 383 95 HOH HOH . I 6 HOH A 84 384 73 HOH HOH . I 6 HOH A 85 385 141 HOH HOH . I 6 HOH A 86 386 142 HOH HOH . I 6 HOH A 87 387 132 HOH HOH . I 6 HOH A 88 388 136 HOH HOH . I 6 HOH A 89 389 48 HOH HOH . I 6 HOH A 90 390 81 HOH HOH . I 6 HOH A 91 391 50 HOH HOH . J 6 HOH B 1 201 42 HOH HOH . J 6 HOH B 2 202 144 HOH HOH . J 6 HOH B 3 203 12 HOH HOH . J 6 HOH B 4 204 145 HOH HOH . J 6 HOH B 5 205 92 HOH HOH . J 6 HOH B 6 206 23 HOH HOH . J 6 HOH B 7 207 71 HOH HOH . J 6 HOH B 8 208 14 HOH HOH . J 6 HOH B 9 209 66 HOH HOH . J 6 HOH B 10 210 52 HOH HOH . J 6 HOH B 11 211 90 HOH HOH . J 6 HOH B 12 212 67 HOH HOH . J 6 HOH B 13 213 36 HOH HOH . J 6 HOH B 14 214 20 HOH HOH . J 6 HOH B 15 215 106 HOH HOH . J 6 HOH B 16 216 15 HOH HOH . J 6 HOH B 17 217 16 HOH HOH . J 6 HOH B 18 218 108 HOH HOH . J 6 HOH B 19 219 124 HOH HOH . J 6 HOH B 20 220 49 HOH HOH . J 6 HOH B 21 221 104 HOH HOH . J 6 HOH B 22 222 2 HOH HOH . J 6 HOH B 23 223 58 HOH HOH . J 6 HOH B 24 224 56 HOH HOH . J 6 HOH B 25 225 77 HOH HOH . J 6 HOH B 26 226 63 HOH HOH . J 6 HOH B 27 227 129 HOH HOH . J 6 HOH B 28 228 24 HOH HOH . J 6 HOH B 29 229 143 HOH HOH . J 6 HOH B 30 230 88 HOH HOH . J 6 HOH B 31 231 107 HOH HOH . J 6 HOH B 32 232 114 HOH HOH . J 6 HOH B 33 233 9 HOH HOH . J 6 HOH B 34 234 78 HOH HOH . J 6 HOH B 35 235 43 HOH HOH . J 6 HOH B 36 236 51 HOH HOH . J 6 HOH B 37 237 62 HOH HOH . J 6 HOH B 38 238 139 HOH HOH . J 6 HOH B 39 239 83 HOH HOH . J 6 HOH B 40 240 91 HOH HOH . J 6 HOH B 41 241 99 HOH HOH . J 6 HOH B 42 242 84 HOH HOH . J 6 HOH B 43 243 112 HOH HOH . J 6 HOH B 44 244 86 HOH HOH . J 6 HOH B 45 245 25 HOH HOH . J 6 HOH B 46 246 60 HOH HOH . J 6 HOH B 47 247 82 HOH HOH . J 6 HOH B 48 248 72 HOH HOH . J 6 HOH B 49 249 54 HOH HOH . J 6 HOH B 50 250 93 HOH HOH . J 6 HOH B 51 251 98 HOH HOH . J 6 HOH B 52 252 117 HOH HOH . J 6 HOH B 53 253 70 HOH HOH . J 6 HOH B 54 254 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 84.943 _atom_site.Cartn_y 65.516 _atom_site.Cartn_z 106.13 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #