data_5UCH # _model_server_result.job_id 5icoHjxoLX0Sc2UTsUMT_g _model_server_result.datetime_utc '2024-11-01 07:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uch # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 5UCH # _exptl.entry_id 5UCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UCH _cell.length_a 128.942 _cell.length_b 128.942 _cell.length_c 106.727 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,O 1 1 B,H,I,P 2 1 C,J,K,L,Q 3 1 D,M,N,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 171 n n C1 C2 GOL sing 172 n n C1 H11 GOL sing 173 n n C1 H12 GOL sing 174 n n O1 HO1 GOL sing 175 n n C2 O2 GOL sing 176 n n C2 C3 GOL sing 177 n n C2 H2 GOL sing 178 n n O2 HO2 GOL sing 179 n n C3 O3 GOL sing 180 n n C3 H31 GOL sing 181 n n C3 H32 GOL sing 182 n n O3 HO3 GOL sing 183 n n # _atom_sites.entry_id 5UCH _atom_sites.fract_transf_matrix[1][1] 0.007755 _atom_sites.fract_transf_matrix[1][2] 0.004478 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 871 A 1 301 1 871 A14 . F 3 GOL A 1 302 601 GOL GOL . G 4 DMS A 1 303 788 DMS DMS . H 2 871 B 1 301 2 871 A14 . I 4 DMS B 1 302 789 DMS DMS . J 2 871 C 1 301 3 871 A14 . K 3 GOL C 1 302 602 GOL GOL . L 4 DMS C 1 303 787 DMS DMS . M 2 871 D 1 301 4 871 A14 . N 4 DMS D 1 302 786 DMS DMS . O 5 HOH A 1 401 24 HOH HOH . O 5 HOH A 2 402 13 HOH HOH . O 5 HOH A 3 403 149 HOH HOH . O 5 HOH A 4 404 38 HOH HOH . O 5 HOH A 5 405 16 HOH HOH . O 5 HOH A 6 406 75 HOH HOH . O 5 HOH A 7 407 85 HOH HOH . O 5 HOH A 8 408 8 HOH HOH . O 5 HOH A 9 409 10 HOH HOH . O 5 HOH A 10 410 39 HOH HOH . O 5 HOH A 11 411 28 HOH HOH . O 5 HOH A 12 412 147 HOH HOH . O 5 HOH A 13 413 167 HOH HOH . O 5 HOH A 14 414 134 HOH HOH . O 5 HOH A 15 415 143 HOH HOH . O 5 HOH A 16 416 46 HOH HOH . O 5 HOH A 17 417 54 HOH HOH . O 5 HOH A 18 418 90 HOH HOH . O 5 HOH A 19 419 214 HOH HOH . O 5 HOH A 20 420 144 HOH HOH . O 5 HOH A 21 421 17 HOH HOH . O 5 HOH A 22 422 198 HOH HOH . O 5 HOH A 23 423 163 HOH HOH . O 5 HOH A 24 424 124 HOH HOH . O 5 HOH A 25 425 138 HOH HOH . O 5 HOH A 26 426 154 HOH HOH . O 5 HOH A 27 427 19 HOH HOH . O 5 HOH A 28 428 145 HOH HOH . O 5 HOH A 29 429 233 HOH HOH . O 5 HOH A 30 430 135 HOH HOH . O 5 HOH A 31 431 150 HOH HOH . O 5 HOH A 32 432 89 HOH HOH . O 5 HOH A 33 433 137 HOH HOH . O 5 HOH A 34 434 44 HOH HOH . O 5 HOH A 35 435 151 HOH HOH . O 5 HOH A 36 436 141 HOH HOH . O 5 HOH A 37 437 123 HOH HOH . O 5 HOH A 38 438 53 HOH HOH . O 5 HOH A 39 439 213 HOH HOH . O 5 HOH A 40 440 40 HOH HOH . O 5 HOH A 41 441 49 HOH HOH . O 5 HOH A 42 442 142 HOH HOH . P 5 HOH B 1 401 11 HOH HOH . P 5 HOH B 2 402 199 HOH HOH . P 5 HOH B 3 403 73 HOH HOH . P 5 HOH B 4 404 194 HOH HOH . P 5 HOH B 5 405 188 HOH HOH . P 5 HOH B 6 406 2 HOH HOH . P 5 HOH B 7 407 209 HOH HOH . P 5 HOH B 8 408 34 HOH HOH . P 5 HOH B 9 409 227 HOH HOH . P 5 HOH B 10 410 180 HOH HOH . P 5 HOH B 11 411 175 HOH HOH . P 5 HOH B 12 412 186 HOH HOH . P 5 HOH B 13 413 7 HOH HOH . P 5 HOH B 14 414 43 HOH HOH . P 5 HOH B 15 415 195 HOH HOH . P 5 HOH B 16 416 191 HOH HOH . P 5 HOH B 17 417 130 HOH HOH . P 5 HOH B 18 418 185 HOH HOH . P 5 HOH B 19 419 88 HOH HOH . P 5 HOH B 20 420 187 HOH HOH . P 5 HOH B 21 421 193 HOH HOH . P 5 HOH B 22 422 51 HOH HOH . P 5 HOH B 23 423 230 HOH HOH . P 5 HOH B 24 424 222 HOH HOH . P 5 HOH B 25 425 114 HOH HOH . P 5 HOH B 26 426 181 HOH HOH . P 5 HOH B 27 427 225 HOH HOH . Q 5 HOH C 1 401 98 HOH HOH . Q 5 HOH C 2 402 202 HOH HOH . Q 5 HOH C 3 403 206 HOH HOH . Q 5 HOH C 4 404 42 HOH HOH . Q 5 HOH C 5 405 106 HOH HOH . Q 5 HOH C 6 406 3 HOH HOH . Q 5 HOH C 7 407 30 HOH HOH . Q 5 HOH C 8 408 71 HOH HOH . Q 5 HOH C 9 409 93 HOH HOH . Q 5 HOH C 10 410 47 HOH HOH . Q 5 HOH C 11 411 126 HOH HOH . Q 5 HOH C 12 412 37 HOH HOH . Q 5 HOH C 13 413 87 HOH HOH . Q 5 HOH C 14 414 104 HOH HOH . Q 5 HOH C 15 415 115 HOH HOH . Q 5 HOH C 16 416 220 HOH HOH . Q 5 HOH C 17 417 164 HOH HOH . Q 5 HOH C 18 418 20 HOH HOH . Q 5 HOH C 19 419 107 HOH HOH . Q 5 HOH C 20 420 201 HOH HOH . Q 5 HOH C 21 421 86 HOH HOH . Q 5 HOH C 22 422 96 HOH HOH . Q 5 HOH C 23 423 63 HOH HOH . Q 5 HOH C 24 424 204 HOH HOH . Q 5 HOH C 25 425 14 HOH HOH . Q 5 HOH C 26 426 178 HOH HOH . Q 5 HOH C 27 427 32 HOH HOH . Q 5 HOH C 28 428 217 HOH HOH . Q 5 HOH C 29 429 221 HOH HOH . Q 5 HOH C 30 430 161 HOH HOH . Q 5 HOH C 31 431 116 HOH HOH . Q 5 HOH C 32 432 162 HOH HOH . Q 5 HOH C 33 433 78 HOH HOH . Q 5 HOH C 34 434 101 HOH HOH . Q 5 HOH C 35 435 165 HOH HOH . R 5 HOH D 1 401 21 HOH HOH . R 5 HOH D 2 402 100 HOH HOH . R 5 HOH D 3 403 169 HOH HOH . R 5 HOH D 4 404 57 HOH HOH . R 5 HOH D 5 405 91 HOH HOH . R 5 HOH D 6 406 228 HOH HOH . R 5 HOH D 7 407 22 HOH HOH . R 5 HOH D 8 408 1 HOH HOH . R 5 HOH D 9 409 172 HOH HOH . R 5 HOH D 10 410 207 HOH HOH . R 5 HOH D 11 411 208 HOH HOH . R 5 HOH D 12 412 77 HOH HOH . R 5 HOH D 13 413 92 HOH HOH . R 5 HOH D 14 414 55 HOH HOH . R 5 HOH D 15 415 26 HOH HOH . R 5 HOH D 16 416 65 HOH HOH . R 5 HOH D 17 417 132 HOH HOH . R 5 HOH D 18 418 119 HOH HOH . R 5 HOH D 19 419 211 HOH HOH . R 5 HOH D 20 420 170 HOH HOH . R 5 HOH D 21 421 129 HOH HOH . R 5 HOH D 22 422 50 HOH HOH . R 5 HOH D 23 423 182 HOH HOH . R 5 HOH D 24 424 41 HOH HOH . R 5 HOH D 25 425 218 HOH HOH . R 5 HOH D 26 426 231 HOH HOH . R 5 HOH D 27 427 68 HOH HOH . R 5 HOH D 28 428 171 HOH HOH . R 5 HOH D 29 429 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 3 7.241 106.965 17.037 1 71.38 ? C1 GOL 302 C 1 HETATM 2 O O1 GOL . . . K 3 7.665 107.048 18.393 1 70.28 ? O1 GOL 302 C 1 HETATM 3 C C2 GOL . . . K 3 7.89 105.781 16.32 1 63.14 ? C2 GOL 302 C 1 HETATM 4 O O2 GOL . . . K 3 8.918 106.202 15.473 1 62.57 ? O2 GOL 302 C 1 HETATM 5 C C3 GOL . . . K 3 6.915 105.128 15.387 1 60.77 ? C3 GOL 302 C 1 HETATM 6 O O3 GOL . . . K 3 7.708 104.68 14.315 1 64.88 ? O3 GOL 302 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #