data_5UD7 # _model_server_result.job_id CaoSWURtxyJV6w4iqIZJpw _model_server_result.datetime_utc '2024-12-03 13:13:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ud7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":202}' # _entry.id 5UD7 # _exptl.entry_id 5UD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UD7 _cell.length_a 160.664 _cell.length_b 160.664 _cell.length_c 86.574 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 Q N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 36 1_555 A SG CYS 92 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 B SG CYS 18 B CYS 36 1_555 B SG CYS 92 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 C SG CYS 18 C CYS 36 1_555 C SG CYS 92 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 D SG CYS 18 D CYS 36 1_555 D SG CYS 92 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? disulf ? disulf5 E SG CYS 18 E CYS 36 1_555 E SG CYS 92 E CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf6 F SG CYS 18 F CYS 36 1_555 F SG CYS 92 F CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A ND2 ASN 61 A ASN 79 1_555 G C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 B ND2 ASN 61 B ASN 79 1_555 I C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 C ND2 ASN 61 C ASN 79 1_555 K C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 D ND2 ASN 61 D ASN 79 1_555 M C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 E ND2 ASN 61 E ASN 79 1_555 Q C1 NAG . E NAG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 F ND2 ASN 61 F ASN 79 1_555 R C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5UD7 _atom_sites.fract_transf_matrix[1][1] 0.006224 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAG A 1 201 1 NAG NAG . H 3 IOD B 1 201 11 IOD IOD . I 2 NAG B 1 202 2 NAG NAG . J 3 IOD C 1 201 10 IOD IOD . K 2 NAG C 1 202 5 NAG NAG . L 4 SO4 C 1 203 2 SO4 SO4 . M 2 NAG D 1 201 4 NAG NAG . N 3 IOD E 1 201 1 IOD IOD . O 3 IOD E 1 202 9 IOD IOD . P 3 IOD E 1 203 13 IOD IOD . Q 2 NAG E 1 204 6 NAG NAG . R 2 NAG F 1 201 7 NAG NAG . S 5 HOH A 1 301 113 HOH HOH . S 5 HOH A 2 302 122 HOH HOH . S 5 HOH A 3 303 116 HOH HOH . S 5 HOH A 4 304 30 HOH HOH . S 5 HOH A 5 305 52 HOH HOH . S 5 HOH A 6 306 14 HOH HOH . S 5 HOH A 7 307 53 HOH HOH . S 5 HOH A 8 308 56 HOH HOH . S 5 HOH A 9 309 118 HOH HOH . S 5 HOH A 10 310 57 HOH HOH . S 5 HOH A 11 311 106 HOH HOH . S 5 HOH A 12 312 54 HOH HOH . S 5 HOH A 13 313 22 HOH HOH . S 5 HOH A 14 314 115 HOH HOH . S 5 HOH A 15 315 55 HOH HOH . S 5 HOH A 16 316 51 HOH HOH . S 5 HOH A 17 317 119 HOH HOH . S 5 HOH A 18 318 34 HOH HOH . S 5 HOH A 19 319 31 HOH HOH . S 5 HOH A 20 320 29 HOH HOH . S 5 HOH A 21 321 120 HOH HOH . S 5 HOH A 22 322 58 HOH HOH . S 5 HOH A 23 323 50 HOH HOH . S 5 HOH A 24 324 20 HOH HOH . S 5 HOH A 25 325 123 HOH HOH . S 5 HOH A 26 326 117 HOH HOH . S 5 HOH A 27 327 127 HOH HOH . T 5 HOH B 1 301 114 HOH HOH . T 5 HOH B 2 302 19 HOH HOH . T 5 HOH B 3 303 107 HOH HOH . T 5 HOH B 4 304 125 HOH HOH . T 5 HOH B 5 305 44 HOH HOH . T 5 HOH B 6 306 4 HOH HOH . T 5 HOH B 7 307 129 HOH HOH . T 5 HOH B 8 308 109 HOH HOH . T 5 HOH B 9 309 61 HOH HOH . T 5 HOH B 10 310 130 HOH HOH . T 5 HOH B 11 311 124 HOH HOH . T 5 HOH B 12 312 62 HOH HOH . T 5 HOH B 13 313 126 HOH HOH . T 5 HOH B 14 314 42 HOH HOH . T 5 HOH B 15 315 128 HOH HOH . T 5 HOH B 16 316 69 HOH HOH . T 5 HOH B 17 317 1 HOH HOH . T 5 HOH B 18 318 131 HOH HOH . U 5 HOH C 1 301 105 HOH HOH . U 5 HOH C 2 302 103 HOH HOH . U 5 HOH C 3 303 45 HOH HOH . U 5 HOH C 4 304 75 HOH HOH . U 5 HOH C 5 305 71 HOH HOH . U 5 HOH C 6 306 15 HOH HOH . U 5 HOH C 7 307 68 HOH HOH . U 5 HOH C 8 308 46 HOH HOH . U 5 HOH C 9 309 48 HOH HOH . U 5 HOH C 10 310 74 HOH HOH . U 5 HOH C 11 311 70 HOH HOH . U 5 HOH C 12 312 32 HOH HOH . U 5 HOH C 13 313 137 HOH HOH . U 5 HOH C 14 314 41 HOH HOH . U 5 HOH C 15 315 21 HOH HOH . U 5 HOH C 16 316 37 HOH HOH . U 5 HOH C 17 317 134 HOH HOH . U 5 HOH C 18 318 67 HOH HOH . U 5 HOH C 19 319 73 HOH HOH . U 5 HOH C 20 320 108 HOH HOH . U 5 HOH C 21 321 38 HOH HOH . U 5 HOH C 22 322 8 HOH HOH . V 5 HOH D 1 301 81 HOH HOH . V 5 HOH D 2 302 9 HOH HOH . V 5 HOH D 3 303 138 HOH HOH . V 5 HOH D 4 304 23 HOH HOH . V 5 HOH D 5 305 76 HOH HOH . V 5 HOH D 6 306 12 HOH HOH . V 5 HOH D 7 307 139 HOH HOH . V 5 HOH D 8 308 85 HOH HOH . V 5 HOH D 9 309 24 HOH HOH . V 5 HOH D 10 310 27 HOH HOH . V 5 HOH D 11 311 78 HOH HOH . V 5 HOH D 12 312 77 HOH HOH . V 5 HOH D 13 313 47 HOH HOH . V 5 HOH D 14 314 86 HOH HOH . V 5 HOH D 15 315 82 HOH HOH . V 5 HOH D 16 316 79 HOH HOH . V 5 HOH D 17 317 17 HOH HOH . V 5 HOH D 18 318 80 HOH HOH . V 5 HOH D 19 319 141 HOH HOH . W 5 HOH E 1 301 84 HOH HOH . W 5 HOH E 2 302 133 HOH HOH . W 5 HOH E 3 303 88 HOH HOH . W 5 HOH E 4 304 18 HOH HOH . W 5 HOH E 5 305 89 HOH HOH . W 5 HOH E 6 306 145 HOH HOH . W 5 HOH E 7 307 87 HOH HOH . W 5 HOH E 8 308 26 HOH HOH . W 5 HOH E 9 309 64 HOH HOH . W 5 HOH E 10 310 140 HOH HOH . W 5 HOH E 11 311 5 HOH HOH . W 5 HOH E 12 312 121 HOH HOH . W 5 HOH E 13 313 16 HOH HOH . W 5 HOH E 14 314 63 HOH HOH . W 5 HOH E 15 315 66 HOH HOH . W 5 HOH E 16 316 112 HOH HOH . W 5 HOH E 17 317 7 HOH HOH . W 5 HOH E 18 318 10 HOH HOH . W 5 HOH E 19 319 83 HOH HOH . W 5 HOH E 20 320 144 HOH HOH . W 5 HOH E 21 321 143 HOH HOH . W 5 HOH E 22 322 142 HOH HOH . W 5 HOH E 23 323 6 HOH HOH . W 5 HOH E 24 324 90 HOH HOH . W 5 HOH E 25 325 65 HOH HOH . X 5 HOH F 1 301 135 HOH HOH . X 5 HOH F 2 302 43 HOH HOH . X 5 HOH F 3 303 92 HOH HOH . X 5 HOH F 4 304 100 HOH HOH . X 5 HOH F 5 305 60 HOH HOH . X 5 HOH F 6 306 35 HOH HOH . X 5 HOH F 7 307 2 HOH HOH . X 5 HOH F 8 308 147 HOH HOH . X 5 HOH F 9 309 36 HOH HOH . X 5 HOH F 10 310 96 HOH HOH . X 5 HOH F 11 311 102 HOH HOH . X 5 HOH F 12 312 97 HOH HOH . X 5 HOH F 13 313 146 HOH HOH . X 5 HOH F 14 314 104 HOH HOH . X 5 HOH F 15 315 11 HOH HOH . X 5 HOH F 16 316 28 HOH HOH . X 5 HOH F 17 317 40 HOH HOH . X 5 HOH F 18 318 95 HOH HOH . X 5 HOH F 19 319 148 HOH HOH . X 5 HOH F 20 320 98 HOH HOH . X 5 HOH F 21 321 59 HOH HOH . X 5 HOH F 22 322 93 HOH HOH . X 5 HOH F 23 323 99 HOH HOH . X 5 HOH F 24 324 13 HOH HOH . X 5 HOH F 25 325 151 HOH HOH . X 5 HOH F 26 326 3 HOH HOH . X 5 HOH F 27 327 101 HOH HOH . X 5 HOH F 28 328 111 HOH HOH . X 5 HOH F 29 329 25 HOH HOH . X 5 HOH F 30 330 152 HOH HOH . X 5 HOH F 31 331 91 HOH HOH . X 5 HOH F 32 332 94 HOH HOH . X 5 HOH F 33 333 150 HOH HOH . X 5 HOH F 34 334 39 HOH HOH . X 5 HOH F 35 335 33 HOH HOH . X 5 HOH F 36 336 49 HOH HOH . X 5 HOH F 37 337 110 HOH HOH . X 5 HOH F 38 338 136 HOH HOH . X 5 HOH F 39 339 149 HOH HOH . X 5 HOH F 40 340 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 2 21.006 22.767 28.097 1 63.48 ? C1 NAG 202 B 1 HETATM 2 C C2 NAG . . . I 2 19.764 22.345 27.335 1 65.05 ? C2 NAG 202 B 1 HETATM 3 C C3 NAG . . . I 2 18.549 23.017 27.947 1 64.29 ? C3 NAG 202 B 1 HETATM 4 C C4 NAG . . . I 2 18.453 22.627 29.422 1 68.3 ? C4 NAG 202 B 1 HETATM 5 C C5 NAG . . . I 2 19.772 22.936 30.155 1 66.96 ? C5 NAG 202 B 1 HETATM 6 C C6 NAG . . . I 2 19.809 22.416 31.579 1 71.04 ? C6 NAG 202 B 1 HETATM 7 C C7 NAG . . . I 2 20.132 21.712 24.991 1 64.06 ? C7 NAG 202 B 1 HETATM 8 C C8 NAG . . . I 2 20.255 22.192 23.579 1 60.07 ? C8 NAG 202 B 1 HETATM 9 N N2 NAG . . . I 2 19.888 22.654 25.918 1 63.61 ? N2 NAG 202 B 1 HETATM 10 O O3 NAG . . . I 2 17.376 22.661 27.223 1 59.44 ? O3 NAG 202 B 1 HETATM 11 O O4 NAG . . . I 2 17.377 23.319 30.048 1 68.44 ? O4 NAG 202 B 1 HETATM 12 O O5 NAG . . . I 2 20.894 22.347 29.47 1 59.99 ? O5 NAG 202 B 1 HETATM 13 O O6 NAG . . . I 2 20.955 21.607 31.824 1 69.71 ? O6 NAG 202 B 1 HETATM 14 O O7 NAG . . . I 2 20.24 20.513 25.281 1 62.47 ? O7 NAG 202 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #