data_5UDX
#
_model_server_result.job_id            kqa_xQyQHUgQ2CRBizXaEQ 
_model_server_result.datetime_utc      '2024-11-01 01:30:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5udx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":303}' 
#
_entry.id    5UDX 
#
_exptl.entry_id    5UDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5UDX 
_cell.length_a            107.828 
_cell.length_b            107.828 
_cell.length_c            319.784 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
? 3 P N N 
? 3 T N N 
? 3 W N N 
? 3 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 190 A HIS 190 1_555 H ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc2 A OD1 ASP 231 A ASP 231 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc3 A OD2 ASP 231 A ASP 231 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc4 G ZN ZN . A ZN 301 1_555 CA O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc5 G ZN ZN . A ZN 301 1_555 B OD1 ASP 231 B ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc6 G ZN ZN . A ZN 301 1_555 B OD2 ASP 231 B ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc7 G ZN ZN . A ZN 301 1_555 C OD1 ASP 231 C ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc8 G ZN ZN . A ZN 301 1_555 C OD2 ASP 231 C ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc9 H ZN ZN . A ZN 302 1_555 CA O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc10 H ZN ZN . A ZN 302 1_555 CA O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc11 B OD1 ASP 218 B ASP 218 1_555 O ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc12 O ZN ZN . B ZN 303 1_555 D NE2 HIS 216 D HIS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc13 D OD2 ASP 59 D ASP 59 1_555 S ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc14 D OD2 ASP 63 D ASP 63 1_555 S ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc15 D OD1 ASP 231 D ASP 231 1_555 R ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc16 D OD2 ASP 231 D ASP 231 1_555 R ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc17 R ZN ZN . D ZN 301 1_555 E OD1 ASP 231 E ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc18 R ZN ZN . D ZN 301 1_555 E OD2 ASP 231 E ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc19 R ZN ZN . D ZN 301 1_555 F OD1 ASP 231 F ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc20 R ZN ZN . D ZN 301 1_555 F OD2 ASP 231 F ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc21 R ZN ZN . D ZN 301 1_555 HA O HOH . F HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc22 F OE1 GLU 55 F GLU 55 1_555 Y ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc23 F OE2 GLU 55 F GLU 55 1_555 Y ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc24 F OD1 ASP 82 F ASP 82 1_555 Y ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc25 F OD2 ASP 82 F ASP 82 1_555 Y ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc26 F NE2 HIS 190 F HIS 190 1_555 Y ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 260 n n 
P O2 PO4 sing 261 n n 
P O3 PO4 sing 262 n n 
P O4 PO4 sing 263 n n 
#
_atom_sites.entry_id                     5UDX 
_atom_sites.fract_transf_matrix[1][1]    0.009274 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ZN A 1 301 2 ZN ZN . 
H 2 ZN A 1 302 4 ZN ZN . 
I 3 PO4 A 1 303 4 PO4 PO4 . 
J 4 SO4 A 1 304 4 SO4 SO4 . 
K 4 SO4 A 1 305 7 SO4 SO4 . 
L 4 SO4 A 1 306 9 SO4 SO4 . 
M 3 PO4 B 1 301 1 PO4 PO4 . 
N 4 SO4 B 1 302 5 SO4 SO4 . 
O 2 ZN B 1 303 7 ZN ZN . 
P 3 PO4 C 1 301 6 PO4 PO4 . 
Q 4 SO4 C 1 302 2 SO4 SO4 . 
R 2 ZN D 1 301 1 ZN ZN . 
S 2 ZN D 1 302 11 ZN ZN . 
T 3 PO4 D 1 303 3 PO4 PO4 . 
U 4 SO4 D 1 304 3 SO4 SO4 . 
V 4 SO4 D 1 305 10 SO4 SO4 . 
W 3 PO4 E 1 301 5 PO4 PO4 . 
X 4 SO4 E 1 302 6 SO4 SO4 . 
Y 2 ZN F 1 301 6 ZN ZN . 
Z 3 PO4 F 1 302 2 PO4 PO4 . 
AA 4 SO4 F 1 303 1 SO4 SO4 . 
BA 4 SO4 F 1 304 8 SO4 SO4 . 
CA 5 HOH A 1 401 46 HOH HOH . 
CA 5 HOH A 2 402 2 HOH HOH . 
CA 5 HOH A 3 403 24 HOH HOH . 
CA 5 HOH A 4 404 25 HOH HOH . 
CA 5 HOH A 5 405 52 HOH HOH . 
CA 5 HOH A 6 406 37 HOH HOH . 
CA 5 HOH A 7 407 11 HOH HOH . 
CA 5 HOH A 8 408 51 HOH HOH . 
CA 5 HOH A 9 409 34 HOH HOH . 
CA 5 HOH A 10 410 9 HOH HOH . 
CA 5 HOH A 11 411 22 HOH HOH . 
CA 5 HOH A 12 412 12 HOH HOH . 
CA 5 HOH A 13 413 43 HOH HOH . 
CA 5 HOH A 14 414 4 HOH HOH . 
DA 5 HOH B 1 401 14 HOH HOH . 
DA 5 HOH B 2 402 35 HOH HOH . 
DA 5 HOH B 3 403 18 HOH HOH . 
DA 5 HOH B 4 404 13 HOH HOH . 
DA 5 HOH B 5 405 50 HOH HOH . 
DA 5 HOH B 6 406 38 HOH HOH . 
DA 5 HOH B 7 407 36 HOH HOH . 
DA 5 HOH B 8 408 33 HOH HOH . 
DA 5 HOH B 9 409 21 HOH HOH . 
DA 5 HOH B 10 410 8 HOH HOH . 
EA 5 HOH C 1 401 28 HOH HOH . 
EA 5 HOH C 2 402 6 HOH HOH . 
EA 5 HOH C 3 404 7 HOH HOH . 
FA 5 HOH D 1 401 31 HOH HOH . 
FA 5 HOH D 2 402 23 HOH HOH . 
FA 5 HOH D 3 403 27 HOH HOH . 
FA 5 HOH D 4 404 5 HOH HOH . 
FA 5 HOH D 5 405 26 HOH HOH . 
FA 5 HOH D 6 406 10 HOH HOH . 
FA 5 HOH D 7 407 19 HOH HOH . 
FA 5 HOH D 8 408 3 HOH HOH . 
FA 5 HOH D 9 409 40 HOH HOH . 
FA 5 HOH D 10 410 39 HOH HOH . 
FA 5 HOH D 11 411 32 HOH HOH . 
FA 5 HOH D 12 412 44 HOH HOH . 
FA 5 HOH D 13 413 29 HOH HOH . 
GA 5 HOH E 1 401 47 HOH HOH . 
GA 5 HOH E 2 402 48 HOH HOH . 
GA 5 HOH E 3 403 16 HOH HOH . 
GA 5 HOH E 4 404 17 HOH HOH . 
HA 5 HOH F 1 401 1 HOH HOH . 
HA 5 HOH F 2 402 30 HOH HOH . 
HA 5 HOH F 3 403 49 HOH HOH . 
HA 5 HOH F 4 404 20 HOH HOH . 
HA 5 HOH F 5 405 41 HOH HOH . 
HA 5 HOH F 6 406 42 HOH HOH . 
HA 5 HOH F 7 407 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . T 3 17.113 58.245 34.055 1 54.63 ? P PO4 303 D 1 
HETATM 2 O O1 PO4 . . . T 3 18.032 59.246 33.397 1 65.31 ? O1 PO4 303 D 1 
HETATM 3 O O2 PO4 . . . T 3 15.748 58.317 33.413 1 49.56 ? O2 PO4 303 D 1 
HETATM 4 O O3 PO4 . . . T 3 17.678 56.855 33.882 1 57.47 ? O3 PO4 303 D 1 
HETATM 5 O O4 PO4 . . . T 3 17 58.572 35.525 1 62.58 ? O4 PO4 303 D 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#