data_5UEC # _model_server_result.job_id GzBsgVp0-YnHGi7vVsrfjA _model_server_result.datetime_utc '2024-10-18 22:21:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5UEC # _exptl.entry_id 5UEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UEC _cell.length_a 77.247 _cell.length_b 77.247 _cell.length_c 202.792 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 436 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.159 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 234 n n CHA C4D HEM doub 235 n n CHA HHA HEM sing 236 n n CHB C4A HEM sing 237 n n CHB C1B HEM doub 238 n n CHB HHB HEM sing 239 n n CHC C4B HEM sing 240 n n CHC C1C HEM doub 241 n n CHC HHC HEM sing 242 n n CHD C4C HEM doub 243 n n CHD C1D HEM sing 244 n n CHD HHD HEM sing 245 n n C1A C2A HEM doub 246 n y C1A NA HEM sing 247 n y C2A C3A HEM sing 248 n y C2A CAA HEM sing 249 n n C3A C4A HEM doub 250 n y C3A CMA HEM sing 251 n n C4A NA HEM sing 252 n y CMA HMA HEM sing 253 n n CMA HMAA HEM sing 254 n n CMA HMAB HEM sing 255 n n CAA CBA HEM sing 256 n n CAA HAA HEM sing 257 n n CAA HAAA HEM sing 258 n n CBA CGA HEM sing 259 n n CBA HBA HEM sing 260 n n CBA HBAA HEM sing 261 n n CGA O1A HEM doub 262 n n CGA O2A HEM sing 263 n n C1B C2B HEM sing 264 n n C1B NB HEM sing 265 n n C2B C3B HEM doub 266 n n C2B CMB HEM sing 267 n n C3B C4B HEM sing 268 n n C3B CAB HEM sing 269 n n C4B NB HEM doub 270 n n CMB HMB HEM sing 271 n n CMB HMBA HEM sing 272 n n CMB HMBB HEM sing 273 n n CAB CBB HEM doub 274 n n CAB HAB HEM sing 275 n n CBB HBB HEM sing 276 n n CBB HBBA HEM sing 277 n n C1C C2C HEM sing 278 n y C1C NC HEM sing 279 n y C2C C3C HEM doub 280 n y C2C CMC HEM sing 281 n n C3C C4C HEM sing 282 n y C3C CAC HEM sing 283 n n C4C NC HEM sing 284 n y CMC HMC HEM sing 285 n n CMC HMCA HEM sing 286 n n CMC HMCB HEM sing 287 n n CAC CBC HEM doub 288 n n CAC HAC HEM sing 289 n n CBC HBC HEM sing 290 n n CBC HBCA HEM sing 291 n n C1D C2D HEM sing 292 n n C1D ND HEM doub 293 n n C2D C3D HEM doub 294 n n C2D CMD HEM sing 295 n n C3D C4D HEM sing 296 n n C3D CAD HEM sing 297 n n C4D ND HEM sing 298 n n CMD HMD HEM sing 299 n n CMD HMDA HEM sing 300 n n CMD HMDB HEM sing 301 n n CAD CBD HEM sing 302 n n CAD HAD HEM sing 303 n n CAD HADA HEM sing 304 n n CBD CGD HEM sing 305 n n CBD HBD HEM sing 306 n n CBD HBDA HEM sing 307 n n CGD O1D HEM doub 308 n n CGD O2D HEM sing 309 n n O2A H2A HEM sing 310 n n O2D H2D HEM sing 311 n n FE NA HEM sing 312 n n FE NB HEM sing 313 n n FE NC HEM sing 314 n n FE ND HEM sing 315 n n # _atom_sites.entry_id 5UEC _atom_sites.fract_transf_matrix[1][1] 0.012945 _atom_sites.fract_transf_matrix[1][2] 0.007474 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 CM5 A 1 502 504 CM5 CM5 . D 3 CM5 A 1 503 503 CM5 CM5 . E 3 CM5 A 1 504 505 CM5 CM5 . F 4 85D A 1 505 1 85D DRG . G 5 HOH A 1 601 24 HOH HOH . G 5 HOH A 2 602 75 HOH HOH . G 5 HOH A 3 603 88 HOH HOH . G 5 HOH A 4 604 123 HOH HOH . G 5 HOH A 5 605 11 HOH HOH . G 5 HOH A 6 606 159 HOH HOH . G 5 HOH A 7 607 306 HOH HOH . G 5 HOH A 8 608 152 HOH HOH . G 5 HOH A 9 609 80 HOH HOH . G 5 HOH A 10 610 98 HOH HOH . G 5 HOH A 11 611 293 HOH HOH . G 5 HOH A 12 612 33 HOH HOH . G 5 HOH A 13 613 93 HOH HOH . G 5 HOH A 14 614 21 HOH HOH . G 5 HOH A 15 615 65 HOH HOH . G 5 HOH A 16 616 212 HOH HOH . G 5 HOH A 17 617 89 HOH HOH . G 5 HOH A 18 618 301 HOH HOH . G 5 HOH A 19 619 154 HOH HOH . G 5 HOH A 20 620 8 HOH HOH . G 5 HOH A 21 621 164 HOH HOH . G 5 HOH A 22 622 2 HOH HOH . G 5 HOH A 23 623 19 HOH HOH . G 5 HOH A 24 624 15 HOH HOH . G 5 HOH A 25 625 13 HOH HOH . G 5 HOH A 26 626 121 HOH HOH . G 5 HOH A 27 627 178 HOH HOH . G 5 HOH A 28 628 64 HOH HOH . G 5 HOH A 29 629 69 HOH HOH . G 5 HOH A 30 630 59 HOH HOH . G 5 HOH A 31 631 221 HOH HOH . G 5 HOH A 32 632 77 HOH HOH . G 5 HOH A 33 633 40 HOH HOH . G 5 HOH A 34 634 334 HOH HOH . G 5 HOH A 35 635 232 HOH HOH . G 5 HOH A 36 636 62 HOH HOH . G 5 HOH A 37 637 92 HOH HOH . G 5 HOH A 38 638 82 HOH HOH . G 5 HOH A 39 639 58 HOH HOH . G 5 HOH A 40 640 83 HOH HOH . G 5 HOH A 41 641 141 HOH HOH . G 5 HOH A 42 642 117 HOH HOH . G 5 HOH A 43 643 155 HOH HOH . G 5 HOH A 44 644 3 HOH HOH . G 5 HOH A 45 645 90 HOH HOH . G 5 HOH A 46 646 176 HOH HOH . G 5 HOH A 47 647 23 HOH HOH . G 5 HOH A 48 648 314 HOH HOH . G 5 HOH A 49 649 14 HOH HOH . G 5 HOH A 50 650 196 HOH HOH . G 5 HOH A 51 651 39 HOH HOH . G 5 HOH A 52 652 48 HOH HOH . G 5 HOH A 53 653 158 HOH HOH . G 5 HOH A 54 654 109 HOH HOH . G 5 HOH A 55 655 160 HOH HOH . G 5 HOH A 56 656 61 HOH HOH . G 5 HOH A 57 657 22 HOH HOH . G 5 HOH A 58 658 127 HOH HOH . G 5 HOH A 59 659 287 HOH HOH . G 5 HOH A 60 660 67 HOH HOH . G 5 HOH A 61 661 153 HOH HOH . G 5 HOH A 62 662 108 HOH HOH . G 5 HOH A 63 663 18 HOH HOH . G 5 HOH A 64 664 128 HOH HOH . G 5 HOH A 65 665 47 HOH HOH . G 5 HOH A 66 666 79 HOH HOH . G 5 HOH A 67 667 125 HOH HOH . G 5 HOH A 68 668 29 HOH HOH . G 5 HOH A 69 669 12 HOH HOH . G 5 HOH A 70 670 133 HOH HOH . G 5 HOH A 71 671 70 HOH HOH . G 5 HOH A 72 672 30 HOH HOH . G 5 HOH A 73 673 104 HOH HOH . G 5 HOH A 74 674 85 HOH HOH . G 5 HOH A 75 675 26 HOH HOH . G 5 HOH A 76 676 31 HOH HOH . G 5 HOH A 77 677 119 HOH HOH . G 5 HOH A 78 678 68 HOH HOH . G 5 HOH A 79 679 84 HOH HOH . G 5 HOH A 80 680 7 HOH HOH . G 5 HOH A 81 681 107 HOH HOH . G 5 HOH A 82 682 282 HOH HOH . G 5 HOH A 83 683 50 HOH HOH . G 5 HOH A 84 684 156 HOH HOH . G 5 HOH A 85 685 38 HOH HOH . G 5 HOH A 86 686 151 HOH HOH . G 5 HOH A 87 687 170 HOH HOH . G 5 HOH A 88 688 5 HOH HOH . G 5 HOH A 89 689 289 HOH HOH . G 5 HOH A 90 690 86 HOH HOH . G 5 HOH A 91 691 17 HOH HOH . G 5 HOH A 92 692 42 HOH HOH . G 5 HOH A 93 693 37 HOH HOH . G 5 HOH A 94 694 46 HOH HOH . G 5 HOH A 95 695 211 HOH HOH . G 5 HOH A 96 696 49 HOH HOH . G 5 HOH A 97 697 91 HOH HOH . G 5 HOH A 98 698 355 HOH HOH . G 5 HOH A 99 699 99 HOH HOH . G 5 HOH A 100 700 105 HOH HOH . G 5 HOH A 101 701 110 HOH HOH . G 5 HOH A 102 702 113 HOH HOH . G 5 HOH A 103 703 106 HOH HOH . G 5 HOH A 104 704 71 HOH HOH . G 5 HOH A 105 705 55 HOH HOH . G 5 HOH A 106 706 45 HOH HOH . G 5 HOH A 107 707 6 HOH HOH . G 5 HOH A 108 708 27 HOH HOH . G 5 HOH A 109 709 240 HOH HOH . G 5 HOH A 110 710 95 HOH HOH . G 5 HOH A 111 711 35 HOH HOH . G 5 HOH A 112 712 25 HOH HOH . G 5 HOH A 113 713 81 HOH HOH . G 5 HOH A 114 714 73 HOH HOH . G 5 HOH A 115 715 165 HOH HOH . G 5 HOH A 116 716 296 HOH HOH . G 5 HOH A 117 717 112 HOH HOH . G 5 HOH A 118 718 251 HOH HOH . G 5 HOH A 119 719 41 HOH HOH . G 5 HOH A 120 720 44 HOH HOH . G 5 HOH A 121 721 166 HOH HOH . G 5 HOH A 122 722 118 HOH HOH . G 5 HOH A 123 723 43 HOH HOH . G 5 HOH A 124 724 52 HOH HOH . G 5 HOH A 125 725 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 28.704 -18.109 14.389 1 34.6 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 27.942 -21.848 17.079 1 29.95 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 23.681 -22.35 15.148 1 34.46 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 24.463 -18.732 12.328 1 27.87 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 28.841 -19.101 15.282 1 35.83 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 30.008 -19.27 16.072 1 34.12 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 29.787 -20.304 16.808 1 33.48 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 28.495 -20.787 16.507 1 32.36 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 30.74 -20.91 17.836 1 29.69 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 31.298 -18.44 16.027 1 33.55 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 31.228 -17.126 16.751 1 40 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 32.575 -16.461 16.771 1 43.68 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 33.139 -16.204 15.735 1 42.26 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 33.114 -16.152 17.816 1 43.35 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 26.726 -22.267 16.702 1 32.02 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 26.134 -23.428 17.25 1 32.25 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 24.977 -23.545 16.706 1 34.12 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 24.818 -22.476 15.82 1 35.27 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 26.772 -24.346 18.288 1 30.25 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 23.91 -24.613 16.939 1 37.38 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 24.134 -25.714 17.61 1 37.97 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 23.541 -21.41 14.237 1 34.49 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 22.4 -21.27 13.437 1 34.49 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 22.619 -20.279 12.654 1 34.08 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 23.906 -19.776 12.947 1 34.27 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 21.154 -22.154 13.502 1 27.9 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 21.691 -19.746 11.568 1 36.18 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 20.455 -19.414 11.82 1 47.83 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 25.677 -18.265 12.645 1 37.08 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 26.258 -17.173 11.966 1 36.41 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 27.576 -16.975 12.621 1 35.67 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 27.637 -17.977 13.6 1 37.61 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 25.67 -16.342 10.828 1 35.59 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 28.629 -15.923 12.299 1 33.3 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 28.3 -14.652 13.039 1 29.07 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 29.296 -13.563 12.798 1 35.34 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 28.94 -12.415 12.897 1 36.33 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 30.446 -13.803 12.519 1 33.26 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 27.891 -20.045 15.554 1 31.57 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 25.906 -21.651 15.794 1 34.72 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 24.479 -20.49 13.951 1 35.53 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 26.508 -18.745 13.627 1 36.66 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 26.05 -20.191 14.951 1 35.45 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 43 #