data_5UEC # _model_server_result.job_id oCwomDYE9T-4zS92cm0Ntg _model_server_result.datetime_utc '2024-10-18 22:20:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5UEC # _exptl.entry_id 5UEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UEC _cell.length_a 77.247 _cell.length_b 77.247 _cell.length_c 202.792 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 436 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.159 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 97 n n C7 C6 CM5 sing 98 n n C7 H71 CM5 sing 99 n n C7 H72 CM5 sing 100 n n C8 C9 CM5 sing 101 n n C8 H81 CM5 sing 102 n n C8 H82 CM5 sing 103 n n C9 C10 CM5 sing 104 n n C9 H91 CM5 sing 105 n n C9 H92 CM5 sing 106 n n C10 C11 CM5 sing 107 n n C10 H101 CM5 sing 108 n n C10 H102 CM5 sing 109 n n C11 C6 CM5 sing 110 n n C11 H111 CM5 sing 111 n n C11 H112 CM5 sing 112 n n C6 C5 CM5 sing 113 n n C6 H6 CM5 sing 114 n n C5 C4 CM5 sing 115 n n C5 H51 CM5 sing 116 n n C5 H52 CM5 sing 117 n n C4 C3 CM5 sing 118 n n C4 H41 CM5 sing 119 n n C4 H42 CM5 sing 120 n n C3 C2 CM5 sing 121 n n C3 H31A CM5 sing 122 n n C3 H32A CM5 sing 123 n n C2 C1 CM5 sing 124 n n C2 H21A CM5 sing 125 n n C2 H22A CM5 sing 126 n n C1 O12 CM5 sing 127 n n C1 H11 CM5 sing 128 n n C1 H12 CM5 sing 129 n n O12 C13 CM5 sing 130 n n C13 C18 CM5 sing 131 n n C13 O14 CM5 sing 132 n n C13 H13 CM5 sing 133 n n C18 O22 CM5 sing 134 n n C18 C17 CM5 sing 135 n n C18 H18 CM5 sing 136 n n O22 H22 CM5 sing 137 n n C17 O21 CM5 sing 138 n n C17 C16 CM5 sing 139 n n C17 H17 CM5 sing 140 n n O21 H21 CM5 sing 141 n n O14 C15 CM5 sing 142 n n C15 C19 CM5 sing 143 n n C15 C16 CM5 sing 144 n n C15 H15 CM5 sing 145 n n C19 O20 CM5 sing 146 n n C19 H191 CM5 sing 147 n n C19 H192 CM5 sing 148 n n O20 H20 CM5 sing 149 n n C16 O23 CM5 sing 150 n n C16 H16 CM5 sing 151 n n O23 C24 CM5 sing 152 n n C24 O25 CM5 sing 153 n n C24 C29 CM5 sing 154 n n C24 H24 CM5 sing 155 n n O25 C26 CM5 sing 156 n n C26 C30 CM5 sing 157 n n C26 C27 CM5 sing 158 n n C26 H26 CM5 sing 159 n n C30 O31 CM5 sing 160 n n C30 H301 CM5 sing 161 n n C30 H302 CM5 sing 162 n n O31 H31 CM5 sing 163 n n C27 O32 CM5 sing 164 n n C27 C28 CM5 sing 165 n n C27 H27 CM5 sing 166 n n O32 H32 CM5 sing 167 n n C28 O33 CM5 sing 168 n n C28 C29 CM5 sing 169 n n C28 H28 CM5 sing 170 n n O33 H33 CM5 sing 171 n n C29 O34 CM5 sing 172 n n C29 H29 CM5 sing 173 n n O34 H34 CM5 sing 174 n n # _atom_sites.entry_id 5UEC _atom_sites.fract_transf_matrix[1][1] 0.012945 _atom_sites.fract_transf_matrix[1][2] 0.007474 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 CM5 A 1 502 504 CM5 CM5 . D 3 CM5 A 1 503 503 CM5 CM5 . E 3 CM5 A 1 504 505 CM5 CM5 . F 4 85D A 1 505 1 85D DRG . G 5 HOH A 1 601 24 HOH HOH . G 5 HOH A 2 602 75 HOH HOH . G 5 HOH A 3 603 88 HOH HOH . G 5 HOH A 4 604 123 HOH HOH . G 5 HOH A 5 605 11 HOH HOH . G 5 HOH A 6 606 159 HOH HOH . G 5 HOH A 7 607 306 HOH HOH . G 5 HOH A 8 608 152 HOH HOH . G 5 HOH A 9 609 80 HOH HOH . G 5 HOH A 10 610 98 HOH HOH . G 5 HOH A 11 611 293 HOH HOH . G 5 HOH A 12 612 33 HOH HOH . G 5 HOH A 13 613 93 HOH HOH . G 5 HOH A 14 614 21 HOH HOH . G 5 HOH A 15 615 65 HOH HOH . G 5 HOH A 16 616 212 HOH HOH . G 5 HOH A 17 617 89 HOH HOH . G 5 HOH A 18 618 301 HOH HOH . G 5 HOH A 19 619 154 HOH HOH . G 5 HOH A 20 620 8 HOH HOH . G 5 HOH A 21 621 164 HOH HOH . G 5 HOH A 22 622 2 HOH HOH . G 5 HOH A 23 623 19 HOH HOH . G 5 HOH A 24 624 15 HOH HOH . G 5 HOH A 25 625 13 HOH HOH . G 5 HOH A 26 626 121 HOH HOH . G 5 HOH A 27 627 178 HOH HOH . G 5 HOH A 28 628 64 HOH HOH . G 5 HOH A 29 629 69 HOH HOH . G 5 HOH A 30 630 59 HOH HOH . G 5 HOH A 31 631 221 HOH HOH . G 5 HOH A 32 632 77 HOH HOH . G 5 HOH A 33 633 40 HOH HOH . G 5 HOH A 34 634 334 HOH HOH . G 5 HOH A 35 635 232 HOH HOH . G 5 HOH A 36 636 62 HOH HOH . G 5 HOH A 37 637 92 HOH HOH . G 5 HOH A 38 638 82 HOH HOH . G 5 HOH A 39 639 58 HOH HOH . G 5 HOH A 40 640 83 HOH HOH . G 5 HOH A 41 641 141 HOH HOH . G 5 HOH A 42 642 117 HOH HOH . G 5 HOH A 43 643 155 HOH HOH . G 5 HOH A 44 644 3 HOH HOH . G 5 HOH A 45 645 90 HOH HOH . G 5 HOH A 46 646 176 HOH HOH . G 5 HOH A 47 647 23 HOH HOH . G 5 HOH A 48 648 314 HOH HOH . G 5 HOH A 49 649 14 HOH HOH . G 5 HOH A 50 650 196 HOH HOH . G 5 HOH A 51 651 39 HOH HOH . G 5 HOH A 52 652 48 HOH HOH . G 5 HOH A 53 653 158 HOH HOH . G 5 HOH A 54 654 109 HOH HOH . G 5 HOH A 55 655 160 HOH HOH . G 5 HOH A 56 656 61 HOH HOH . G 5 HOH A 57 657 22 HOH HOH . G 5 HOH A 58 658 127 HOH HOH . G 5 HOH A 59 659 287 HOH HOH . G 5 HOH A 60 660 67 HOH HOH . G 5 HOH A 61 661 153 HOH HOH . G 5 HOH A 62 662 108 HOH HOH . G 5 HOH A 63 663 18 HOH HOH . G 5 HOH A 64 664 128 HOH HOH . G 5 HOH A 65 665 47 HOH HOH . G 5 HOH A 66 666 79 HOH HOH . G 5 HOH A 67 667 125 HOH HOH . G 5 HOH A 68 668 29 HOH HOH . G 5 HOH A 69 669 12 HOH HOH . G 5 HOH A 70 670 133 HOH HOH . G 5 HOH A 71 671 70 HOH HOH . G 5 HOH A 72 672 30 HOH HOH . G 5 HOH A 73 673 104 HOH HOH . G 5 HOH A 74 674 85 HOH HOH . G 5 HOH A 75 675 26 HOH HOH . G 5 HOH A 76 676 31 HOH HOH . G 5 HOH A 77 677 119 HOH HOH . G 5 HOH A 78 678 68 HOH HOH . G 5 HOH A 79 679 84 HOH HOH . G 5 HOH A 80 680 7 HOH HOH . G 5 HOH A 81 681 107 HOH HOH . G 5 HOH A 82 682 282 HOH HOH . G 5 HOH A 83 683 50 HOH HOH . G 5 HOH A 84 684 156 HOH HOH . G 5 HOH A 85 685 38 HOH HOH . G 5 HOH A 86 686 151 HOH HOH . G 5 HOH A 87 687 170 HOH HOH . G 5 HOH A 88 688 5 HOH HOH . G 5 HOH A 89 689 289 HOH HOH . G 5 HOH A 90 690 86 HOH HOH . G 5 HOH A 91 691 17 HOH HOH . G 5 HOH A 92 692 42 HOH HOH . G 5 HOH A 93 693 37 HOH HOH . G 5 HOH A 94 694 46 HOH HOH . G 5 HOH A 95 695 211 HOH HOH . G 5 HOH A 96 696 49 HOH HOH . G 5 HOH A 97 697 91 HOH HOH . G 5 HOH A 98 698 355 HOH HOH . G 5 HOH A 99 699 99 HOH HOH . G 5 HOH A 100 700 105 HOH HOH . G 5 HOH A 101 701 110 HOH HOH . G 5 HOH A 102 702 113 HOH HOH . G 5 HOH A 103 703 106 HOH HOH . G 5 HOH A 104 704 71 HOH HOH . G 5 HOH A 105 705 55 HOH HOH . G 5 HOH A 106 706 45 HOH HOH . G 5 HOH A 107 707 6 HOH HOH . G 5 HOH A 108 708 27 HOH HOH . G 5 HOH A 109 709 240 HOH HOH . G 5 HOH A 110 710 95 HOH HOH . G 5 HOH A 111 711 35 HOH HOH . G 5 HOH A 112 712 25 HOH HOH . G 5 HOH A 113 713 81 HOH HOH . G 5 HOH A 114 714 73 HOH HOH . G 5 HOH A 115 715 165 HOH HOH . G 5 HOH A 116 716 296 HOH HOH . G 5 HOH A 117 717 112 HOH HOH . G 5 HOH A 118 718 251 HOH HOH . G 5 HOH A 119 719 41 HOH HOH . G 5 HOH A 120 720 44 HOH HOH . G 5 HOH A 121 721 166 HOH HOH . G 5 HOH A 122 722 118 HOH HOH . G 5 HOH A 123 723 43 HOH HOH . G 5 HOH A 124 724 52 HOH HOH . G 5 HOH A 125 725 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . C 3 19.561 -25.253 -1.635 1 64.13 ? C7 CM5 502 A 1 HETATM 2 C C8 CM5 . . . C 3 20.172 -24.04 -0.868 1 62.81 ? C8 CM5 502 A 1 HETATM 3 C C9 CM5 . . . C 3 20.239 -24.219 0.648 1 59.93 ? C9 CM5 502 A 1 HETATM 4 C C10 CM5 . . . C 3 18.967 -24.851 1.269 1 61.24 ? C10 CM5 502 A 1 HETATM 5 C C11 CM5 . . . C 3 18.013 -25.692 0.358 1 64.73 ? C11 CM5 502 A 1 HETATM 6 C C6 CM5 . . . C 3 18.113 -25.561 -1.197 1 64.41 ? C6 CM5 502 A 1 HETATM 7 C C5 CM5 . . . C 3 17.647 -26.88 -1.853 1 65.37 ? C5 CM5 502 A 1 HETATM 8 C C4 CM5 . . . C 3 17.022 -26.658 -3.251 1 70.48 ? C4 CM5 502 A 1 HETATM 9 C C3 CM5 . . . C 3 16.538 -27.946 -3.942 1 72.68 ? C3 CM5 502 A 1 HETATM 10 C C2 CM5 . . . C 3 16.263 -27.686 -5.442 1 78.11 ? C2 CM5 502 A 1 HETATM 11 C C1 CM5 . . . C 3 17.469 -28.016 -6.364 1 82.31 ? C1 CM5 502 A 1 HETATM 12 O O12 CM5 . . . C 3 17.046 -27.798 -7.739 1 89.41 ? O12 CM5 502 A 1 HETATM 13 C C13 CM5 . . . C 3 18.235 -27.961 -8.683 1 94.65 ? C13 CM5 502 A 1 HETATM 14 C C18 CM5 . . . C 3 17.89 -28.388 -10.013 1 97.26 ? C18 CM5 502 A 1 HETATM 15 O O22 CM5 . . . C 3 17.376 -29.878 -9.565 1 96.56 ? O22 CM5 502 A 1 HETATM 16 C C17 CM5 . . . C 3 19.011 -28.612 -11.018 1 98.92 ? C17 CM5 502 A 1 HETATM 17 O O21 CM5 . . . C 3 17.963 -28.274 -11.95 1 98.56 ? O21 CM5 502 A 1 HETATM 18 O O14 CM5 . . . C 3 19.262 -26.817 -8.59 1 95.44 ? O14 CM5 502 A 1 HETATM 19 C C15 CM5 . . . C 3 20.253 -26.598 -9.713 1 98.12 ? C15 CM5 502 A 1 HETATM 20 C C19 CM5 . . . C 3 20.498 -25.048 -10.001 1 96.96 ? C19 CM5 502 A 1 HETATM 21 O O20 CM5 . . . C 3 19.355 -24.341 -10.516 1 96.33 ? O20 CM5 502 A 1 HETATM 22 C C16 CM5 . . . C 3 19.923 -27.26 -11.153 1 100.58 ? C16 CM5 502 A 1 HETATM 23 O O23 CM5 . . . C 3 21.065 -27.245 -11.899 1 106.22 ? O23 CM5 502 A 1 HETATM 24 C C24 CM5 . . . C 3 21.638 -27.437 -13.196 1 110.89 ? C24 CM5 502 A 1 HETATM 25 O O25 CM5 . . . C 3 22.729 -26.436 -13.458 1 111.5 ? O25 CM5 502 A 1 HETATM 26 C C26 CM5 . . . C 3 24.153 -26.395 -12.961 1 113.1 ? C26 CM5 502 A 1 HETATM 27 C C30 CM5 . . . C 3 25.059 -25.961 -14.236 1 113.21 ? C30 CM5 502 A 1 HETATM 28 O O31 CM5 . . . C 3 25.783 -24.626 -13.886 1 111.55 ? O31 CM5 502 A 1 HETATM 29 C C27 CM5 . . . C 3 24.572 -27.945 -12.818 1 114.77 ? C27 CM5 502 A 1 HETATM 30 O O32 CM5 . . . C 3 25.941 -28.091 -12.398 1 114.29 ? O32 CM5 502 A 1 HETATM 31 C C28 CM5 . . . C 3 23.56 -28.834 -11.959 1 115.13 ? C28 CM5 502 A 1 HETATM 32 O O33 CM5 . . . C 3 24.098 -30.165 -11.704 1 115.91 ? O33 CM5 502 A 1 HETATM 33 C C29 CM5 . . . C 3 22.065 -28.603 -12.251 1 113.45 ? C29 CM5 502 A 1 HETATM 34 O O34 CM5 . . . C 3 21.35 -28.996 -11.281 1 113.15 ? O34 CM5 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #