data_5UFU
#
_model_server_result.job_id            57HdX7enjgdq3f59o9A3-A 
_model_server_result.datetime_utc      '2025-01-10 05:22:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ufu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":402}' 
#
_entry.id    5UFU 
#
_exptl.entry_id    5UFU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5UFU 
_cell.length_a            124.264 
_cell.length_b            124.264 
_cell.length_c            401.569 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UFU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -66.928167 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? 
covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 116 n n 
P O2P AMP sing 117 n n 
P O3P AMP sing 118 n n 
P O5' AMP sing 119 n n 
O2P HOP2 AMP sing 120 n n 
O3P HOP3 AMP sing 121 n n 
O5' C5' AMP sing 122 n n 
C5' C4' AMP sing 123 n n 
C5' "H5'1" AMP sing 124 n n 
C5' "H5'2" AMP sing 125 n n 
C4' O4' AMP sing 126 n n 
C4' C3' AMP sing 127 n n 
C4' H4' AMP sing 128 n n 
O4' C1' AMP sing 129 n n 
C3' O3' AMP sing 130 n n 
C3' C2' AMP sing 131 n n 
C3' H3' AMP sing 132 n n 
O3' HO3' AMP sing 133 n n 
C2' O2' AMP sing 134 n n 
C2' C1' AMP sing 135 n n 
C2' H2' AMP sing 136 n n 
O2' HO2' AMP sing 137 n n 
C1' N9 AMP sing 138 n n 
C1' H1' AMP sing 139 n n 
N9 C8 AMP sing 140 n y 
N9 C4 AMP sing 141 n y 
C8 N7 AMP doub 142 n y 
C8 H8 AMP sing 143 n n 
N7 C5 AMP sing 144 n y 
C5 C6 AMP sing 145 n y 
C5 C4 AMP doub 146 n y 
C6 N6 AMP sing 147 n n 
C6 N1 AMP doub 148 n y 
N6 HN61 AMP sing 149 n n 
N6 HN62 AMP sing 150 n n 
N1 C2 AMP sing 151 n y 
C2 N3 AMP doub 152 n y 
C2 H2 AMP sing 153 n n 
N3 C4 AMP sing 154 n y 
#
_atom_sites.entry_id                     5UFU 
_atom_sites.fract_transf_matrix[1][1]    0.008047 
_atom_sites.fract_transf_matrix[1][2]    0.004646 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00249 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 STU A 1 601 4000 STU STU . 
E 5 85V A 1 602 4000 85V PFE . 
F 6 CL A 1 603 6 CL CL . 
G 6 CL A 1 604 7 CL CL . 
H 6 CL A 1 605 8 CL CL . 
I 7 SO4 A 1 606 2 SO4 SO4 . 
J 8 AMP C 1 401 1 AMP AMP . 
K 8 AMP C 1 402 2 AMP AMP . 
L 9 ADP C 1 403 3 ADP ADP . 
M 7 SO4 C 1 404 3 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . K 8 -39.431 62.225 21.103 1 184.13 ? P AMP 402 C 1 
HETATM 2 O O1P AMP . . . K 8 -39.357 61.498 19.75 1 183.64 ? O1P AMP 402 C 1 
HETATM 3 O O2P AMP . . . K 8 -39.921 63.648 20.981 1 181.2 ? O2P AMP 402 C 1 
HETATM 4 O O3P AMP . . . K 8 -38.069 62.117 21.768 1 187.8 ? O3P AMP 402 C 1 
HETATM 5 O O5' AMP . . . K 8 -40.339 61.301 22.015 1 184.81 ? O5' AMP 402 C 1 
HETATM 6 C C5' AMP . . . K 8 -40.917 61.582 23.301 1 187 ? C5' AMP 402 C 1 
HETATM 7 C C4' AMP . . . K 8 -41.092 60.326 24.119 1 189.76 ? C4' AMP 402 C 1 
HETATM 8 O O4' AMP . . . K 8 -39.87 60.044 24.838 1 193.79 ? O4' AMP 402 C 1 
HETATM 9 C C3' AMP . . . K 8 -42.185 60.395 25.183 1 190.57 ? C3' AMP 402 C 1 
HETATM 10 O O3' AMP . . . K 8 -42.811 59.134 25.396 1 190.97 ? O3' AMP 402 C 1 
HETATM 11 C C2' AMP . . . K 8 -41.425 60.92 26.403 1 193.97 ? C2' AMP 402 C 1 
HETATM 12 O O2' AMP . . . K 8 -41.998 60.569 27.656 1 195.59 ? O2' AMP 402 C 1 
HETATM 13 C C1' AMP . . . K 8 -40.056 60.256 26.228 1 196.38 ? C1' AMP 402 C 1 
HETATM 14 N N9 AMP . . . K 8 -38.948 61.064 26.732 1 199.69 ? N9 AMP 402 C 1 
HETATM 15 C C8 AMP . . . K 8 -38.465 62.233 26.199 1 199.76 ? C8 AMP 402 C 1 
HETATM 16 N N7 AMP . . . K 8 -37.52 62.794 26.913 1 202.69 ? N7 AMP 402 C 1 
HETATM 17 C C5 AMP . . . K 8 -37.364 61.932 27.987 1 205.06 ? C5 AMP 402 C 1 
HETATM 18 C C6 AMP . . . K 8 -36.515 61.961 29.111 1 209.36 ? C6 AMP 402 C 1 
HETATM 19 N N6 AMP . . . K 8 -35.641 62.939 29.356 1 212.29 ? N6 AMP 402 C 1 
HETATM 20 N N1 AMP . . . K 8 -36.606 60.939 29.991 1 210.81 ? N1 AMP 402 C 1 
HETATM 21 C C2 AMP . . . K 8 -37.486 59.959 29.757 1 208.44 ? C2 AMP 402 C 1 
HETATM 22 N N3 AMP . . . K 8 -38.341 59.828 28.739 1 204.38 ? N3 AMP 402 C 1 
HETATM 23 C C4 AMP . . . K 8 -38.231 60.857 27.884 1 203.03 ? C4 AMP 402 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#