data_5UFU
#
_model_server_result.job_id            tdzFkbmuH9TRj3PrSjl_tQ 
_model_server_result.datetime_utc      '2025-01-10 05:06:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ufu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":403}' 
#
_entry.id    5UFU 
#
_exptl.entry_id    5UFU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5UFU 
_cell.length_a            124.264 
_cell.length_b            124.264 
_cell.length_c            401.569 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UFU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -66.928167 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? 
covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 60 n n 
PB O2B ADP sing 61 n n 
PB O3B ADP sing 62 n n 
PB O3A ADP sing 63 n n 
O2B HOB2 ADP sing 64 n n 
O3B HOB3 ADP sing 65 n n 
PA O1A ADP doub 66 n n 
PA O2A ADP sing 67 n n 
PA O3A ADP sing 68 n n 
PA O5' ADP sing 69 n n 
O2A HOA2 ADP sing 70 n n 
O5' C5' ADP sing 71 n n 
C5' C4' ADP sing 72 n n 
C5' "H5'1" ADP sing 73 n n 
C5' "H5'2" ADP sing 74 n n 
C4' O4' ADP sing 75 n n 
C4' C3' ADP sing 76 n n 
C4' H4' ADP sing 77 n n 
O4' C1' ADP sing 78 n n 
C3' O3' ADP sing 79 n n 
C3' C2' ADP sing 80 n n 
C3' H3' ADP sing 81 n n 
O3' HO3' ADP sing 82 n n 
C2' O2' ADP sing 83 n n 
C2' C1' ADP sing 84 n n 
C2' H2' ADP sing 85 n n 
O2' HO2' ADP sing 86 n n 
C1' N9 ADP sing 87 n n 
C1' H1' ADP sing 88 n n 
N9 C8 ADP sing 89 n y 
N9 C4 ADP sing 90 n y 
C8 N7 ADP doub 91 n y 
C8 H8 ADP sing 92 n n 
N7 C5 ADP sing 93 n y 
C5 C6 ADP sing 94 n y 
C5 C4 ADP doub 95 n y 
C6 N6 ADP sing 96 n n 
C6 N1 ADP doub 97 n y 
N6 HN61 ADP sing 98 n n 
N6 HN62 ADP sing 99 n n 
N1 C2 ADP sing 100 n y 
C2 N3 ADP doub 101 n y 
C2 H2 ADP sing 102 n n 
N3 C4 ADP sing 103 n y 
#
_atom_sites.entry_id                     5UFU 
_atom_sites.fract_transf_matrix[1][1]    0.008047 
_atom_sites.fract_transf_matrix[1][2]    0.004646 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00249 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 STU A 1 601 4000 STU STU . 
E 5 85V A 1 602 4000 85V PFE . 
F 6 CL A 1 603 6 CL CL . 
G 6 CL A 1 604 7 CL CL . 
H 6 CL A 1 605 8 CL CL . 
I 7 SO4 A 1 606 2 SO4 SO4 . 
J 8 AMP C 1 401 1 AMP AMP . 
K 8 AMP C 1 402 2 AMP AMP . 
L 9 ADP C 1 403 3 ADP ADP . 
M 7 SO4 C 1 404 3 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . L 9 -41.041 67.925 14.65 1 178.63 ? PB ADP 403 C 1 
HETATM 2 O O1B ADP . . . L 9 -40.218 67.12 13.651 1 179.39 ? O1B ADP 403 C 1 
HETATM 3 O O2B ADP . . . L 9 -42.306 67.205 15.055 1 175.96 ? O2B ADP 403 C 1 
HETATM 4 O O3B ADP . . . L 9 -40.124 68.216 15.853 1 181.73 ? O3B ADP 403 C 1 
HETATM 5 P PA ADP . . . L 9 -40.571 70.394 13.078 1 175.97 ? PA ADP 403 C 1 
HETATM 6 O O1A ADP . . . L 9 -39.762 69.637 12.012 1 176.34 ? O1A ADP 403 C 1 
HETATM 7 O O2A ADP . . . L 9 -39.646 71.171 13.939 1 179.29 ? O2A ADP 403 C 1 
HETATM 8 O O3A ADP . . . L 9 -41.372 69.33 13.962 1 176.83 ? O3A ADP 403 C 1 
HETATM 9 O O5' ADP . . . L 9 -41.613 71.334 12.316 1 170.71 ? O5' ADP 403 C 1 
HETATM 10 C C5' ADP . . . L 9 -42.135 72.652 12.601 1 167.4 ? C5' ADP 403 C 1 
HETATM 11 C C4' ADP . . . L 9 -42.784 73.239 11.368 1 163.85 ? C4' ADP 403 C 1 
HETATM 12 O O4' ADP . . . L 9 -41.834 73.277 10.283 1 164.03 ? O4' ADP 403 C 1 
HETATM 13 C C3' ADP . . . L 9 -44.042 72.534 10.851 1 159.61 ? C3' ADP 403 C 1 
HETATM 14 O O3' ADP . . . L 9 -45.148 73.417 10.72 1 159.11 ? O3' ADP 403 C 1 
HETATM 15 C C2' ADP . . . L 9 -43.611 71.913 9.514 1 158.84 ? C2' ADP 403 C 1 
HETATM 16 O O2' ADP . . . L 9 -44.658 72.015 8.552 1 157.57 ? O2' ADP 403 C 1 
HETATM 17 C C1' ADP . . . L 9 -42.412 72.772 9.097 1 161.16 ? C1' ADP 403 C 1 
HETATM 18 N N9 ADP . . . L 9 -41.373 72.057 8.347 1 158.68 ? N9 ADP 403 C 1 
HETATM 19 C C8 ADP . . . L 9 -40.514 71.105 8.836 1 157.02 ? C8 ADP 403 C 1 
HETATM 20 N N7 ADP . . . L 9 -39.605 70.71 7.977 1 157.35 ? N7 ADP 403 C 1 
HETATM 21 C C5 ADP . . . L 9 -39.886 71.448 6.838 1 158.18 ? C5 ADP 403 C 1 
HETATM 22 C C6 ADP . . . L 9 -39.267 71.517 5.574 1 159.44 ? C6 ADP 403 C 1 
HETATM 23 N N6 ADP . . . L 9 -38.188 70.805 5.235 1 159.79 ? N6 ADP 403 C 1 
HETATM 24 N N1 ADP . . . L 9 -39.792 72.367 4.66 1 160.93 ? N1 ADP 403 C 1 
HETATM 25 C C2 ADP . . . L 9 -40.865 73.094 4.998 1 160.1 ? C2 ADP 403 C 1 
HETATM 26 N N3 ADP . . . L 9 -41.531 73.118 6.158 1 158.14 ? N3 ADP 403 C 1 
HETATM 27 C C4 ADP . . . L 9 -40.984 72.273 7.046 1 158.07 ? C4 ADP 403 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#