data_5UGA # _model_server_result.job_id XVGZ5M30A1FtyD90fS-dhg _model_server_result.datetime_utc '2024-10-10 16:26:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9001}' # _entry.id 5UGA # _exptl.entry_id 5UGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.605 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-{[2-{[(3S)-1-acetylpyrrolidin-3-yl]amino}-9-(propan-2-yl)-9H-purin-6-yl]amino}phenyl)-1-methylpiperazin-1-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UGA _cell.length_a 40.904 _cell.length_b 69.595 _cell.length_c 110.218 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H35 N9 O' _chem_comp.formula_weight 477.605 _chem_comp.id 8BM _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-{[2-{[(3S)-1-acetylpyrrolidin-3-yl]amino}-9-(propan-2-yl)-9H-purin-6-yl]amino}phenyl)-1-methylpiperazin-1-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-[(3S)-3-{[6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-9-(propan-2-yl)-9H-purin-2-yl]amino}pyrrolidin-1-yl]ethan-1-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C31 8BM sing 1 n n C32 C31 8BM sing 2 n n C31 N30 8BM sing 3 n n N30 C29 8BM sing 4 n y N30 C34 8BM sing 5 n y N35 C34 8BM doub 6 n y N35 C10 8BM sing 7 n y C29 N28 8BM doub 8 n y C34 C27 8BM sing 9 n y N9 C10 8BM sing 10 n n N9 C7 8BM sing 11 n n C10 N11 8BM doub 12 n y N28 C27 8BM sing 13 n y O3 C2 8BM doub 14 n n C27 C12 8BM doub 15 n y C8 N4 8BM sing 16 n n C8 C7 8BM sing 17 n n C2 N4 8BM sing 18 n n C2 C1 8BM sing 19 n n N4 C5 8BM sing 20 n n C7 C6 8BM sing 21 n n N11 C12 8BM sing 22 n y C12 N13 8BM sing 23 n n C5 C6 8BM sing 24 n n N13 C14 8BM sing 25 n n C14 C19 8BM doub 26 n y C14 C15 8BM sing 27 n y C19 C18 8BM sing 28 n y C15 C16 8BM doub 29 n y C18 C17 8BM doub 30 n y C16 C17 8BM sing 31 n y C17 N20 8BM sing 32 n n N20 C21 8BM sing 33 n n N20 C26 8BM sing 34 n n C21 C22 8BM sing 35 n n C26 C25 8BM sing 36 n n C22 N23 8BM sing 37 n n C25 N23 8BM sing 38 n n N23 C24 8BM sing 39 n n C5 H1 8BM sing 40 n n C5 H2 8BM sing 41 n n C6 H3 8BM sing 42 n n C6 H4 8BM sing 43 n n C7 H5 8BM sing 44 n n C8 H6 8BM sing 45 n n C8 H7 8BM sing 46 n n C15 H8 8BM sing 47 n n C21 H9 8BM sing 48 n n C21 H10 8BM sing 49 n n C22 H11 8BM sing 50 n n C22 H12 8BM sing 51 n n C24 H13 8BM sing 52 n n C24 H14 8BM sing 53 n n C24 H15 8BM sing 54 n n C26 H16 8BM sing 55 n n C26 H17 8BM sing 56 n n C1 H18 8BM sing 57 n n C1 H19 8BM sing 58 n n C1 H20 8BM sing 59 n n N9 H21 8BM sing 60 n n N13 H22 8BM sing 61 n n C16 H23 8BM sing 62 n n C18 H24 8BM sing 63 n n C19 H25 8BM sing 64 n n C25 H27 8BM sing 65 n n C25 H28 8BM sing 66 n n C29 H29 8BM sing 67 n n C31 H30 8BM sing 68 n n C32 H31 8BM sing 69 n n C32 H32 8BM sing 70 n n C32 H33 8BM sing 71 n n C33 H34 8BM sing 72 n n C33 H35 8BM sing 73 n n C33 H36 8BM sing 74 n n # _atom_sites.entry_id 5UGA _atom_sites.fract_transf_matrix[1][1] 0.024447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8BM A 1 9001 9001 8BM LIG . C 3 SO4 A 1 9002 9002 SO4 SO4 . D 3 SO4 A 1 9003 9003 SO4 SO4 . E 4 GOL A 1 9004 9004 GOL GOL . F 4 GOL A 1 9005 9005 GOL GOL . G 4 GOL A 1 9006 9006 GOL GOL . H 5 HOH A 1 9101 127 HOH WAT . H 5 HOH A 2 9102 68 HOH WAT . H 5 HOH A 3 9103 58 HOH WAT . H 5 HOH A 4 9104 154 HOH WAT . H 5 HOH A 5 9105 129 HOH WAT . H 5 HOH A 6 9106 139 HOH WAT . H 5 HOH A 7 9107 146 HOH WAT . H 5 HOH A 8 9108 48 HOH WAT . H 5 HOH A 9 9109 45 HOH WAT . H 5 HOH A 10 9110 78 HOH WAT . H 5 HOH A 11 9111 70 HOH WAT . H 5 HOH A 12 9112 148 HOH WAT . H 5 HOH A 13 9113 90 HOH WAT . H 5 HOH A 14 9114 31 HOH WAT . H 5 HOH A 15 9115 57 HOH WAT . H 5 HOH A 16 9116 79 HOH WAT . H 5 HOH A 17 9117 11 HOH WAT . H 5 HOH A 18 9118 110 HOH WAT . H 5 HOH A 19 9119 82 HOH WAT . H 5 HOH A 20 9120 39 HOH WAT . H 5 HOH A 21 9121 1 HOH WAT . H 5 HOH A 22 9122 29 HOH WAT . H 5 HOH A 23 9123 20 HOH WAT . H 5 HOH A 24 9124 19 HOH WAT . H 5 HOH A 25 9125 55 HOH WAT . H 5 HOH A 26 9126 10 HOH WAT . H 5 HOH A 27 9127 157 HOH WAT . H 5 HOH A 28 9128 52 HOH WAT . H 5 HOH A 29 9129 80 HOH WAT . H 5 HOH A 30 9130 103 HOH WAT . H 5 HOH A 31 9131 141 HOH WAT . H 5 HOH A 32 9132 106 HOH WAT . H 5 HOH A 33 9133 159 HOH WAT . H 5 HOH A 34 9134 92 HOH WAT . H 5 HOH A 35 9135 9 HOH WAT . H 5 HOH A 36 9136 46 HOH WAT . H 5 HOH A 37 9137 86 HOH WAT . H 5 HOH A 38 9138 123 HOH WAT . H 5 HOH A 39 9139 91 HOH WAT . H 5 HOH A 40 9140 8 HOH WAT . H 5 HOH A 41 9141 97 HOH WAT . H 5 HOH A 42 9142 111 HOH WAT . H 5 HOH A 43 9143 153 HOH WAT . H 5 HOH A 44 9144 32 HOH WAT . H 5 HOH A 45 9145 65 HOH WAT . H 5 HOH A 46 9146 101 HOH WAT . H 5 HOH A 47 9147 102 HOH WAT . H 5 HOH A 48 9148 128 HOH WAT . H 5 HOH A 49 9149 16 HOH WAT . H 5 HOH A 50 9150 94 HOH WAT . H 5 HOH A 51 9151 17 HOH WAT . H 5 HOH A 52 9152 30 HOH WAT . H 5 HOH A 53 9153 114 HOH WAT . H 5 HOH A 54 9154 67 HOH WAT . H 5 HOH A 55 9155 24 HOH WAT . H 5 HOH A 56 9156 22 HOH WAT . H 5 HOH A 57 9157 25 HOH WAT . H 5 HOH A 58 9158 34 HOH WAT . H 5 HOH A 59 9159 83 HOH WAT . H 5 HOH A 60 9160 108 HOH WAT . H 5 HOH A 61 9161 5 HOH WAT . H 5 HOH A 62 9162 56 HOH WAT . H 5 HOH A 63 9163 21 HOH WAT . H 5 HOH A 64 9164 3 HOH WAT . H 5 HOH A 65 9165 118 HOH WAT . H 5 HOH A 66 9166 2 HOH WAT . H 5 HOH A 67 9167 136 HOH WAT . H 5 HOH A 68 9168 12 HOH WAT . H 5 HOH A 69 9169 53 HOH WAT . H 5 HOH A 70 9170 109 HOH WAT . H 5 HOH A 71 9171 96 HOH WAT . H 5 HOH A 72 9172 125 HOH WAT . H 5 HOH A 73 9173 60 HOH WAT . H 5 HOH A 74 9174 77 HOH WAT . H 5 HOH A 75 9175 89 HOH WAT . H 5 HOH A 76 9176 14 HOH WAT . H 5 HOH A 77 9177 88 HOH WAT . H 5 HOH A 78 9178 76 HOH WAT . H 5 HOH A 79 9179 26 HOH WAT . H 5 HOH A 80 9180 63 HOH WAT . H 5 HOH A 81 9181 158 HOH WAT . H 5 HOH A 82 9182 40 HOH WAT . H 5 HOH A 83 9183 38 HOH WAT . H 5 HOH A 84 9184 35 HOH WAT . H 5 HOH A 85 9185 61 HOH WAT . H 5 HOH A 86 9186 51 HOH WAT . H 5 HOH A 87 9187 120 HOH WAT . H 5 HOH A 88 9188 28 HOH WAT . H 5 HOH A 89 9189 4 HOH WAT . H 5 HOH A 90 9190 99 HOH WAT . H 5 HOH A 91 9191 119 HOH WAT . H 5 HOH A 92 9192 122 HOH WAT . H 5 HOH A 93 9193 42 HOH WAT . H 5 HOH A 94 9194 18 HOH WAT . H 5 HOH A 95 9195 149 HOH WAT . H 5 HOH A 96 9196 81 HOH WAT . H 5 HOH A 97 9197 124 HOH WAT . H 5 HOH A 98 9198 13 HOH WAT . H 5 HOH A 99 9199 113 HOH WAT . H 5 HOH A 100 9200 152 HOH WAT . H 5 HOH A 101 9201 36 HOH WAT . H 5 HOH A 102 9202 107 HOH WAT . H 5 HOH A 103 9203 93 HOH WAT . H 5 HOH A 104 9204 72 HOH WAT . H 5 HOH A 105 9205 155 HOH WAT . H 5 HOH A 106 9206 116 HOH WAT . H 5 HOH A 107 9207 156 HOH WAT . H 5 HOH A 108 9208 98 HOH WAT . H 5 HOH A 109 9209 115 HOH WAT . H 5 HOH A 110 9210 126 HOH WAT . H 5 HOH A 111 9211 47 HOH WAT . H 5 HOH A 112 9212 54 HOH WAT . H 5 HOH A 113 9213 64 HOH WAT . H 5 HOH A 114 9214 15 HOH WAT . H 5 HOH A 115 9215 37 HOH WAT . H 5 HOH A 116 9216 100 HOH WAT . H 5 HOH A 117 9217 62 HOH WAT . H 5 HOH A 118 9218 27 HOH WAT . H 5 HOH A 119 9219 147 HOH WAT . H 5 HOH A 120 9220 71 HOH WAT . H 5 HOH A 121 9221 50 HOH WAT . H 5 HOH A 122 9222 74 HOH WAT . H 5 HOH A 123 9223 59 HOH WAT . H 5 HOH A 124 9224 66 HOH WAT . H 5 HOH A 125 9225 23 HOH WAT . H 5 HOH A 126 9226 6 HOH WAT . H 5 HOH A 127 9227 33 HOH WAT . H 5 HOH A 128 9228 7 HOH WAT . H 5 HOH A 129 9229 85 HOH WAT . H 5 HOH A 130 9230 69 HOH WAT . H 5 HOH A 131 9231 41 HOH WAT . H 5 HOH A 132 9232 44 HOH WAT . H 5 HOH A 133 9233 75 HOH WAT . H 5 HOH A 134 9234 49 HOH WAT . H 5 HOH A 135 9235 73 HOH WAT . H 5 HOH A 136 9236 104 HOH WAT . H 5 HOH A 137 9237 87 HOH WAT . H 5 HOH A 138 9238 105 HOH WAT . H 5 HOH A 139 9239 84 HOH WAT . H 5 HOH A 140 9240 130 HOH WAT . H 5 HOH A 141 9241 43 HOH WAT . H 5 HOH A 142 9242 121 HOH WAT . H 5 HOH A 143 9243 143 HOH WAT . H 5 HOH A 144 9244 142 HOH WAT . H 5 HOH A 145 9245 95 HOH WAT . H 5 HOH A 146 9246 117 HOH WAT . H 5 HOH A 147 9247 138 HOH WAT . H 5 HOH A 148 9248 112 HOH WAT . H 5 HOH A 149 9249 133 HOH WAT . H 5 HOH A 150 9250 140 HOH WAT . H 5 HOH A 151 9251 151 HOH WAT . H 5 HOH A 152 9252 144 HOH WAT . H 5 HOH A 153 9253 132 HOH WAT . H 5 HOH A 154 9254 145 HOH WAT . H 5 HOH A 155 9255 134 HOH WAT . H 5 HOH A 156 9256 137 HOH WAT . H 5 HOH A 157 9257 131 HOH WAT . H 5 HOH A 158 9258 160 HOH WAT . H 5 HOH A 159 9259 135 HOH WAT . H 5 HOH A 160 9260 150 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 8BM . . . B 2 13.916 -6.893 -29.898 1 41.98 ? C5 8BM 9001 A 1 HETATM 2 C C6 8BM . . . B 2 14.36 -5.797 -30.86 1 39.71 ? C6 8BM 9001 A 1 HETATM 3 C C7 8BM . . . B 2 14.043 -6.355 -32.259 1 39.3 ? C7 8BM 9001 A 1 HETATM 4 C C8 8BM . . . B 2 14.282 -7.855 -32.081 1 41.54 ? C8 8BM 9001 A 1 HETATM 5 C C10 8BM . . . B 2 12.07 -4.941 -32.881 1 28.51 ? C10 8BM 9001 A 1 HETATM 6 C C15 8BM . . . B 2 15.363 -2.144 -32.728 1 31.19 ? C15 8BM 9001 A 1 HETATM 7 C C17 8BM . . . B 2 17.227 -0.479 -32.61 1 37.03 ? C17 8BM 9001 A 1 HETATM 8 C C21 8BM . . . B 2 19.083 1.201 -32.416 1 47.08 ? C21 8BM 9001 A 1 HETATM 9 C C22 8BM . . . B 2 20.333 1.297 -31.535 1 48.51 ? C22 8BM 9001 A 1 HETATM 10 C C24 8BM . . . B 2 22.639 0.389 -31.249 1 50.89 ? C24 8BM 9001 A 1 HETATM 11 C C26 8BM . . . B 2 19.579 -1.079 -33.045 1 46.12 ? C26 8BM 9001 A 1 HETATM 12 C C1 8BM . . . B 2 13.525 -10.556 -31.019 1 44.32 ? C1 8BM 9001 A 1 HETATM 13 C C2 8BM . . . B 2 13.521 -9.345 -30.114 1 42.89 ? C2 8BM 9001 A 1 HETATM 14 O O3 8BM . . . B 2 13.203 -9.468 -28.923 1 44.21 ? O3 8BM 9001 A 1 HETATM 15 N N4 8BM . . . B 2 13.887 -8.122 -30.687 1 41.53 ? N4 8BM 9001 A 1 HETATM 16 N N9 8BM . . . B 2 12.643 -6.187 -32.643 1 31.34 ? N9 8BM 9001 A 1 HETATM 17 N N11 8BM . . . B 2 12.836 -3.802 -32.942 1 26.5 ? N11 8BM 9001 A 1 HETATM 18 C C12 8BM . . . B 2 12.276 -2.556 -33.177 1 25.82 ? C12 8BM 9001 A 1 HETATM 19 N N13 8BM . . . B 2 13.03 -1.379 -33.235 1 26.91 ? N13 8BM 9001 A 1 HETATM 20 C C14 8BM . . . B 2 14.41 -1.139 -33.053 1 30.33 ? C14 8BM 9001 A 1 HETATM 21 C C16 8BM . . . B 2 16.727 -1.821 -32.512 1 33.62 ? C16 8BM 9001 A 1 HETATM 22 C C18 8BM . . . B 2 16.252 0.522 -32.954 1 33.84 ? C18 8BM 9001 A 1 HETATM 23 C C19 8BM . . . B 2 14.881 0.2 -33.17 1 30.76 ? C19 8BM 9001 A 1 HETATM 24 N N20 8BM . . . B 2 18.596 -0.196 -32.347 1 43.48 ? N20 8BM 9001 A 1 HETATM 25 N N23 8BM . . . B 2 21.391 0.347 -32.081 1 49.72 ? N23 8BM 9001 A 1 HETATM 26 C C25 8BM . . . B 2 20.86 -1.089 -32.189 1 47.46 ? C25 8BM 9001 A 1 HETATM 27 C C27 8BM . . . B 2 10.869 -2.51 -33.347 1 25 ? C27 8BM 9001 A 1 HETATM 28 N N28 8BM . . . B 2 9.995 -1.482 -33.58 1 23.53 ? N28 8BM 9001 A 1 HETATM 29 C C29 8BM . . . B 2 8.807 -2.06 -33.631 1 21.8 ? C29 8BM 9001 A 1 HETATM 30 N N30 8BM . . . B 2 8.871 -3.425 -33.442 1 23.54 ? N30 8BM 9001 A 1 HETATM 31 C C31 8BM . . . B 2 7.792 -4.432 -33.421 1 23.79 ? C31 8BM 9001 A 1 HETATM 32 C C32 8BM . . . B 2 7.74 -5.228 -34.733 1 21.87 ? C32 8BM 9001 A 1 HETATM 33 C C33 8BM . . . B 2 6.396 -3.839 -33.155 1 23.52 ? C33 8BM 9001 A 1 HETATM 34 C C34 8BM . . . B 2 10.19 -3.724 -33.26 1 22.98 ? C34 8BM 9001 A 1 HETATM 35 N N35 8BM . . . B 2 10.72 -4.948 -33.037 1 26.83 ? N35 8BM 9001 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #