data_5UGB # _model_server_result.job_id YH85v6iw9cgBmsPhB0qdgA _model_server_result.datetime_utc '2024-10-10 10:20:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ugb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9001}' # _entry.id 5UGB # _exptl.entry_id 5UGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.605 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-{[2-{[(3S)-1-acetylpyrrolidin-3-yl]amino}-9-(propan-2-yl)-9H-purin-6-yl]amino}phenyl)-1-methylpiperazin-1-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UGB _cell.length_a 146.706 _cell.length_b 146.706 _cell.length_c 146.706 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H35 N9 O' _chem_comp.formula_weight 477.605 _chem_comp.id 8BM _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-{[2-{[(3S)-1-acetylpyrrolidin-3-yl]amino}-9-(propan-2-yl)-9H-purin-6-yl]amino}phenyl)-1-methylpiperazin-1-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-[(3S)-3-{[6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-9-(propan-2-yl)-9H-purin-2-yl]amino}pyrrolidin-1-yl]ethan-1-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C31 8BM sing 1 n n C32 C31 8BM sing 2 n n C31 N30 8BM sing 3 n n N30 C29 8BM sing 4 n y N30 C34 8BM sing 5 n y N35 C34 8BM doub 6 n y N35 C10 8BM sing 7 n y C29 N28 8BM doub 8 n y C34 C27 8BM sing 9 n y N9 C10 8BM sing 10 n n N9 C7 8BM sing 11 n n C10 N11 8BM doub 12 n y N28 C27 8BM sing 13 n y O3 C2 8BM doub 14 n n C27 C12 8BM doub 15 n y C8 N4 8BM sing 16 n n C8 C7 8BM sing 17 n n C2 N4 8BM sing 18 n n C2 C1 8BM sing 19 n n N4 C5 8BM sing 20 n n C7 C6 8BM sing 21 n n N11 C12 8BM sing 22 n y C12 N13 8BM sing 23 n n C5 C6 8BM sing 24 n n N13 C14 8BM sing 25 n n C14 C19 8BM doub 26 n y C14 C15 8BM sing 27 n y C19 C18 8BM sing 28 n y C15 C16 8BM doub 29 n y C18 C17 8BM doub 30 n y C16 C17 8BM sing 31 n y C17 N20 8BM sing 32 n n N20 C21 8BM sing 33 n n N20 C26 8BM sing 34 n n C21 C22 8BM sing 35 n n C26 C25 8BM sing 36 n n C22 N23 8BM sing 37 n n C25 N23 8BM sing 38 n n N23 C24 8BM sing 39 n n C5 H1 8BM sing 40 n n C5 H2 8BM sing 41 n n C6 H3 8BM sing 42 n n C6 H4 8BM sing 43 n n C7 H5 8BM sing 44 n n C8 H6 8BM sing 45 n n C8 H7 8BM sing 46 n n C15 H8 8BM sing 47 n n C21 H9 8BM sing 48 n n C21 H10 8BM sing 49 n n C22 H11 8BM sing 50 n n C22 H12 8BM sing 51 n n C24 H13 8BM sing 52 n n C24 H14 8BM sing 53 n n C24 H15 8BM sing 54 n n C26 H16 8BM sing 55 n n C26 H17 8BM sing 56 n n C1 H18 8BM sing 57 n n C1 H19 8BM sing 58 n n C1 H20 8BM sing 59 n n N9 H21 8BM sing 60 n n N13 H22 8BM sing 61 n n C16 H23 8BM sing 62 n n C18 H24 8BM sing 63 n n C19 H25 8BM sing 64 n n C25 H27 8BM sing 65 n n C25 H28 8BM sing 66 n n C29 H29 8BM sing 67 n n C31 H30 8BM sing 68 n n C32 H31 8BM sing 69 n n C32 H32 8BM sing 70 n n C32 H33 8BM sing 71 n n C33 H34 8BM sing 72 n n C33 H35 8BM sing 73 n n C33 H36 8BM sing 74 n n # _atom_sites.entry_id 5UGB _atom_sites.fract_transf_matrix[1][1] 0.006816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8BM A 1 9001 9001 8BM LIG . C 3 HOH A 1 9101 5 HOH WAT . C 3 HOH A 2 9102 1 HOH WAT . C 3 HOH A 3 9103 7 HOH WAT . C 3 HOH A 4 9104 6 HOH WAT . C 3 HOH A 5 9105 4 HOH WAT . C 3 HOH A 6 9106 3 HOH WAT . C 3 HOH A 7 9107 8 HOH WAT . C 3 HOH A 8 9108 2 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 8BM . . . B 2 4.404 -50.802 -20.342 1 81.39 ? C5 8BM 9001 A 1 HETATM 2 C C6 8BM . . . B 2 2.974 -50.836 -19.853 1 79.35 ? C6 8BM 9001 A 1 HETATM 3 C C7 8BM . . . B 2 2.192 -50.045 -20.923 1 77.13 ? C7 8BM 9001 A 1 HETATM 4 C C8 8BM . . . B 2 3.181 -48.974 -21.336 1 79.36 ? C8 8BM 9001 A 1 HETATM 5 C C10 8BM . . . B 2 0.892 -51.894 -22.02 1 66.14 ? C10 8BM 9001 A 1 HETATM 6 C C15 8BM . . . B 2 -1.535 -53.339 -16.954 1 63.26 ? C15 8BM 9001 A 1 HETATM 7 C C17 8BM . . . B 2 -0.328 -51.777 -15.454 1 68.67 ? C17 8BM 9001 A 1 HETATM 8 C C21 8BM . . . B 2 -0.586 -49.957 -13.878 1 74.82 ? C21 8BM 9001 A 1 HETATM 9 C C22 8BM . . . B 2 -0.504 -49.712 -12.363 1 77.48 ? C22 8BM 9001 A 1 HETATM 10 C C24 8BM . . . B 2 1.078 -49.671 -10.422 1 79.23 ? C24 8BM 9001 A 1 HETATM 11 C C26 8BM . . . B 2 1.352 -51.482 -13.746 1 74.63 ? C26 8BM 9001 A 1 HETATM 12 C C1 8BM . . . B 2 6.973 -49.343 -20.772 1 88.25 ? C1 8BM 9001 A 1 HETATM 13 C C2 8BM . . . B 2 5.647 -48.728 -21.193 1 86.56 ? C2 8BM 9001 A 1 HETATM 14 O O3 8BM . . . B 2 5.622 -47.603 -21.715 1 89.55 ? O3 8BM 9001 A 1 HETATM 15 N N4 8BM . . . B 2 4.496 -49.483 -20.961 1 82.96 ? N4 8BM 9001 A 1 HETATM 16 N N9 8BM . . . B 2 1.835 -50.856 -22.106 1 71 ? N9 8BM 9001 A 1 HETATM 17 N N11 8BM . . . B 2 0.313 -52.138 -20.814 1 62.21 ? N11 8BM 9001 A 1 HETATM 18 C C12 8BM . . . B 2 -0.607 -53.12 -20.604 1 60.91 ? C12 8BM 9001 A 1 HETATM 19 N N13 8BM . . . B 2 -1.191 -53.346 -19.353 1 61.08 ? N13 8BM 9001 A 1 HETATM 20 C C14 8BM . . . B 2 -0.882 -52.794 -18.091 1 63.23 ? C14 8BM 9001 A 1 HETATM 21 C C16 8BM . . . B 2 -1.262 -52.839 -15.662 1 66.12 ? C16 8BM 9001 A 1 HETATM 22 C C18 8BM . . . B 2 0.324 -51.227 -16.603 1 66.21 ? C18 8BM 9001 A 1 HETATM 23 C C19 8BM . . . B 2 0.048 -51.727 -17.88 1 64.12 ? C19 8BM 9001 A 1 HETATM 24 N N20 8BM . . . B 2 -0.086 -51.329 -14.134 1 72.35 ? N20 8BM 9001 A 1 HETATM 25 N N23 8BM . . . B 2 0.948 -49.895 -11.899 1 78.26 ? N23 8BM 9001 A 1 HETATM 26 C C25 8BM . . . B 2 1.488 -51.276 -12.246 1 76.67 ? C25 8BM 9001 A 1 HETATM 27 C C27 8BM . . . B 2 -0.96 -53.911 -21.71 1 61.29 ? C27 8BM 9001 A 1 HETATM 28 N N28 8BM . . . B 2 -1.827 -54.947 -21.822 1 60.39 ? N28 8BM 9001 A 1 HETATM 29 C C29 8BM . . . B 2 -1.757 -55.293 -23.09 1 60.92 ? C29 8BM 9001 A 1 HETATM 30 N N30 8BM . . . B 2 -0.882 -54.529 -23.819 1 61.14 ? N30 8BM 9001 A 1 HETATM 31 C C31 8BM . . . B 2 -0.668 -54.74 -25.263 1 62.78 ? C31 8BM 9001 A 1 HETATM 32 C C32 8BM . . . B 2 0.342 -55.827 -25.563 1 62.57 ? C32 8BM 9001 A 1 HETATM 33 C C33 8BM . . . B 2 -0.272 -53.472 -26.044 1 64.18 ? C33 8BM 9001 A 1 HETATM 34 C C34 8BM . . . B 2 -0.335 -53.611 -22.929 1 62.35 ? C34 8BM 9001 A 1 HETATM 35 N N35 8BM . . . B 2 0.591 -52.623 -23.144 1 64.99 ? N35 8BM 9001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #