data_5UGI # _model_server_result.job_id Jh9lJ61zpDh1zRn7fYyBDg _model_server_result.datetime_utc '2024-11-16 16:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ugi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5UGI # _exptl.entry_id 5UGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EQUILENIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UGI _cell.length_a 60.777 _cell.length_b 60.777 _cell.length_c 143.087 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H18 O2' _chem_comp.formula_weight 266.334 _chem_comp.id EQU _chem_comp.mon_nstd_flag . _chem_comp.name EQUILENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EQU doub 70 n y C1 C6 EQU sing 71 n y C1 O1 EQU sing 72 n n C2 C3 EQU sing 73 n y C2 H2 EQU sing 74 n n C3 C4 EQU doub 75 n y C3 C10 EQU sing 76 n y C4 C5 EQU sing 77 n y C4 C13 EQU sing 78 n y C5 C6 EQU doub 79 n y C5 H5 EQU sing 80 n n C6 H6 EQU sing 81 n n C10 C11 EQU doub 82 n y C10 H10 EQU sing 83 n n C11 C12 EQU sing 84 n y C11 H11 EQU sing 85 n n C12 C13 EQU doub 86 n y C12 C16 EQU sing 87 n n C13 C19 EQU sing 88 n n C16 C17 EQU sing 89 n n C16 C24 EQU sing 90 n n C16 H16 EQU sing 91 n n C17 C18 EQU sing 92 n n C17 C26 EQU sing 93 n n C17 C27 EQU sing 94 n n C18 C19 EQU sing 95 n n C18 H181 EQU sing 96 n n C18 H182 EQU sing 97 n n C19 H191 EQU sing 98 n n C19 H192 EQU sing 99 n n C24 C25 EQU sing 100 n n C24 H241 EQU sing 101 n n C24 H242 EQU sing 102 n n C25 C26 EQU sing 103 n n C25 H251 EQU sing 104 n n C25 H252 EQU sing 105 n n C26 O26 EQU doub 106 n n C27 H271 EQU sing 107 n n C27 H272 EQU sing 108 n n C27 H273 EQU sing 109 n n O1 HO1 EQU sing 110 n n # _atom_sites.entry_id 5UGI _atom_sites.fract_transf_matrix[1][1] 0.016454 _atom_sites.fract_transf_matrix[1][2] 0.009499 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EQU A 1 201 1 EQU EQU . C 3 HOH A 1 301 91 HOH HOH . C 3 HOH A 2 302 101 HOH HOH . C 3 HOH A 3 303 90 HOH HOH . C 3 HOH A 4 304 82 HOH HOH . C 3 HOH A 5 305 20 HOH HOH . C 3 HOH A 6 306 26 HOH HOH . C 3 HOH A 7 307 25 HOH HOH . C 3 HOH A 8 308 28 HOH HOH . C 3 HOH A 9 309 34 HOH HOH . C 3 HOH A 10 310 50 HOH HOH . C 3 HOH A 11 311 1 HOH HOH . C 3 HOH A 12 312 56 HOH HOH . C 3 HOH A 13 313 64 HOH HOH . C 3 HOH A 14 314 3 HOH HOH . C 3 HOH A 15 315 30 HOH HOH . C 3 HOH A 16 316 13 HOH HOH . C 3 HOH A 17 317 22 HOH HOH . C 3 HOH A 18 318 58 HOH HOH . C 3 HOH A 19 319 27 HOH HOH . C 3 HOH A 20 320 73 HOH HOH . C 3 HOH A 21 321 102 HOH HOH . C 3 HOH A 22 322 59 HOH HOH . C 3 HOH A 23 323 33 HOH HOH . C 3 HOH A 24 324 41 HOH HOH . C 3 HOH A 25 325 21 HOH HOH . C 3 HOH A 26 326 2 HOH HOH . C 3 HOH A 27 327 43 HOH HOH . C 3 HOH A 28 328 7 HOH HOH . C 3 HOH A 29 329 8 HOH HOH . C 3 HOH A 30 330 9 HOH HOH . C 3 HOH A 31 331 60 HOH HOH . C 3 HOH A 32 332 4 HOH HOH . C 3 HOH A 33 333 17 HOH HOH . C 3 HOH A 34 334 6 HOH HOH . C 3 HOH A 35 335 52 HOH HOH . C 3 HOH A 36 336 70 HOH HOH . C 3 HOH A 37 337 99 HOH HOH . C 3 HOH A 38 338 12 HOH HOH . C 3 HOH A 39 339 87 HOH HOH . C 3 HOH A 40 340 35 HOH HOH . C 3 HOH A 41 341 45 HOH HOH . C 3 HOH A 42 342 63 HOH HOH . C 3 HOH A 43 343 54 HOH HOH . C 3 HOH A 44 344 10 HOH HOH . C 3 HOH A 45 345 81 HOH HOH . C 3 HOH A 46 346 67 HOH HOH . C 3 HOH A 47 347 44 HOH HOH . C 3 HOH A 48 348 96 HOH HOH . C 3 HOH A 49 349 16 HOH HOH . C 3 HOH A 50 350 46 HOH HOH . C 3 HOH A 51 351 38 HOH HOH . C 3 HOH A 52 352 55 HOH HOH . C 3 HOH A 53 353 88 HOH HOH . C 3 HOH A 54 354 40 HOH HOH . C 3 HOH A 55 355 100 HOH HOH . C 3 HOH A 56 356 71 HOH HOH . C 3 HOH A 57 357 89 HOH HOH . C 3 HOH A 58 358 76 HOH HOH . C 3 HOH A 59 359 94 HOH HOH . C 3 HOH A 60 360 83 HOH HOH . C 3 HOH A 61 361 19 HOH HOH . C 3 HOH A 62 362 29 HOH HOH . C 3 HOH A 63 363 42 HOH HOH . C 3 HOH A 64 364 84 HOH HOH . C 3 HOH A 65 365 74 HOH HOH . C 3 HOH A 66 366 97 HOH HOH . C 3 HOH A 67 367 72 HOH HOH . C 3 HOH A 68 368 32 HOH HOH . C 3 HOH A 69 369 36 HOH HOH . C 3 HOH A 70 370 53 HOH HOH . C 3 HOH A 71 371 66 HOH HOH . C 3 HOH A 72 372 69 HOH HOH . C 3 HOH A 73 373 48 HOH HOH . C 3 HOH A 74 374 75 HOH HOH . C 3 HOH A 75 375 11 HOH HOH . C 3 HOH A 76 376 18 HOH HOH . C 3 HOH A 77 377 61 HOH HOH . C 3 HOH A 78 378 93 HOH HOH . C 3 HOH A 79 379 92 HOH HOH . C 3 HOH A 80 380 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EQU . A . B 2 -26.51 2.768 -11.949 0.78 40.71 ? C1 EQU 201 A 1 HETATM 2 C C1 EQU . B . B 2 -26.412 2.85 -12.018 0.22 24.66 ? C1 EQU 201 A 1 HETATM 3 C C2 EQU . A . B 2 -26.84 3.184 -13.216 0.78 42.03 ? C2 EQU 201 A 1 HETATM 4 C C2 EQU . B . B 2 -26.59 1.507 -11.841 0.22 25.87 ? C2 EQU 201 A 1 HETATM 5 C C3 EQU . A . B 2 -27.143 2.228 -14.206 0.78 41.93 ? C3 EQU 201 A 1 HETATM 6 C C3 EQU . B . B 2 -27.104 0.717 -12.906 0.22 27.99 ? C3 EQU 201 A 1 HETATM 7 C C4 EQU . A . B 2 -27.09 0.862 -13.865 0.78 44.97 ? C4 EQU 201 A 1 HETATM 8 C C4 EQU . B . B 2 -27.415 1.361 -14.127 0.22 28.04 ? C4 EQU 201 A 1 HETATM 9 C C5 EQU . A . B 2 -26.745 0.479 -12.541 0.78 44.17 ? C5 EQU 201 A 1 HETATM 10 C C5 EQU . B . B 2 -27.217 2.752 -14.266 0.22 25.89 ? C5 EQU 201 A 1 HETATM 11 C C6 EQU . A . B 2 -26.454 1.4 -11.598 0.78 41.12 ? C6 EQU 201 A 1 HETATM 12 C C6 EQU . B . B 2 -26.73 3.502 -13.253 0.22 25.1 ? C6 EQU 201 A 1 HETATM 13 C C10 EQU . A . B 2 -27.482 2.637 -15.498 0.78 43.09 ? C10 EQU 201 A 1 HETATM 14 C C10 EQU . B . B 2 -27.296 -0.668 -12.75 0.22 29.87 ? C10 EQU 201 A 1 HETATM 15 C C11 EQU . A . B 2 -27.774 1.714 -16.465 0.78 48.4 ? C11 EQU 201 A 1 HETATM 16 C C11 EQU . B . B 2 -27.792 -1.426 -13.787 0.22 30.45 ? C11 EQU 201 A 1 HETATM 17 C C12 EQU . A . B 2 -27.728 0.355 -16.125 0.78 51.94 ? C12 EQU 201 A 1 HETATM 18 C C12 EQU . B . B 2 -28.101 -0.773 -14.994 0.22 31.11 ? C12 EQU 201 A 1 HETATM 19 C C13 EQU . A . B 2 -27.399 -0.085 -14.89 0.78 49.15 ? C13 EQU 201 A 1 HETATM 20 C C13 EQU . B . B 2 -27.934 0.553 -15.185 0.22 30.08 ? C13 EQU 201 A 1 HETATM 21 C C16 EQU . A . B 2 -28.018 -0.643 -17.186 0.78 57.68 ? C16 EQU 201 A 1 HETATM 22 C C16 EQU . B . B 2 -28.633 -1.579 -16.12 0.22 33.96 ? C16 EQU 201 A 1 HETATM 23 C C17 EQU . A . B 2 -28.749 -1.821 -16.551 0.78 59.42 ? C17 EQU 201 A 1 HETATM 24 C C17 EQU . B . B 2 -27.983 -1.036 -17.413 0.22 35.91 ? C17 EQU 201 A 1 HETATM 25 C C18 EQU . A . B 2 -27.78 -2.512 -15.624 0.78 55.01 ? C18 EQU 201 A 1 HETATM 26 C C18 EQU . B . B 2 -28.59 0.337 -17.661 0.22 34.54 ? C18 EQU 201 A 1 HETATM 27 C C19 EQU . A . B 2 -27.342 -1.54 -14.505 0.78 51.77 ? C19 EQU 201 A 1 HETATM 28 C C19 EQU . B . B 2 -28.25 1.265 -16.477 0.22 31.62 ? C19 EQU 201 A 1 HETATM 29 C C24 EQU . A . B 2 -28.88 -0.268 -18.39 0.78 60.38 ? C24 EQU 201 A 1 HETATM 30 C C24 EQU . B . B 2 -28.364 -3.065 -16.18 0.22 34.74 ? C24 EQU 201 A 1 HETATM 31 C C25 EQU . A . B 2 -29.335 -1.633 -18.905 0.78 63.47 ? C25 EQU 201 A 1 HETATM 32 C C25 EQU . B . B 2 -28.586 -3.378 -17.659 0.22 36.26 ? C25 EQU 201 A 1 HETATM 33 C C26 EQU . A . B 2 -29.132 -2.617 -17.771 0.78 63.52 ? C26 EQU 201 A 1 HETATM 34 C C26 EQU . B . B 2 -28.34 -2.102 -18.42 0.22 36.72 ? C26 EQU 201 A 1 HETATM 35 C C27 EQU . A . B 2 -30.048 -1.398 -15.878 0.78 61.77 ? C27 EQU 201 A 1 HETATM 36 C C27 EQU . B . B 2 -26.443 -1.033 -17.358 0.22 36.2 ? C27 EQU 201 A 1 HETATM 37 O O1 EQU . A . B 2 -26.216 3.676 -10.992 0.78 36.7 ? O1 EQU 201 A 1 HETATM 38 O O1 EQU . B . B 2 -25.92 3.612 -11.006 0.22 22.23 ? O1 EQU 201 A 1 HETATM 39 O O26 EQU . A . B 2 -29.248 -3.824 -17.82 0.78 65.25 ? O26 EQU 201 A 1 HETATM 40 O O26 EQU . B . B 2 -28.402 -1.953 -19.619 0.22 37.86 ? O26 EQU 201 A 1 HETATM 41 H H2 EQU . A . B 2 -26.875 4.085 -13.441 0.78 50.43 ? H2 EQU 201 A 1 HETATM 42 H H2 EQU . B . B 2 -26.383 1.09 -11.036 0.22 31.05 ? H2 EQU 201 A 1 HETATM 43 H H5 EQU . A . B 2 -26.712 -0.426 -12.33 0.78 53.01 ? H5 EQU 201 A 1 HETATM 44 H H5 EQU . B . B 2 -27.428 3.154 -15.078 0.22 31.07 ? H5 EQU 201 A 1 HETATM 45 H H6 EQU . A . B 2 -26.228 1.16 -10.729 0.78 49.35 ? H6 EQU 201 A 1 HETATM 46 H H6 EQU . B . B 2 -26.594 4.418 -13.337 0.22 30.12 ? H6 EQU 201 A 1 HETATM 47 H H10 EQU . A . B 2 -27.508 3.542 -15.71 0.78 51.7 ? H10 EQU 201 A 1 HETATM 48 H H10 EQU . B . B 2 -27.087 -1.081 -11.944 0.22 35.85 ? H10 EQU 201 A 1 HETATM 49 H H11 EQU . A . B 2 -27.997 1.974 -17.33 0.78 58.08 ? H11 EQU 201 A 1 HETATM 50 H H11 EQU . B . B 2 -27.925 -2.343 -13.698 0.22 36.54 ? H11 EQU 201 A 1 HETATM 51 H H16 EQU . A . B 2 -27.143 -0.907 -17.51 0.78 69.22 ? H16 EQU 201 A 1 HETATM 52 H H16 EQU . B . B 2 -29.591 -1.428 -16.111 0.22 40.75 ? H16 EQU 201 A 1 HETATM 53 H H181 EQU . A . B 2 -28.16 -3.326 -15.257 0.78 66.01 ? H181 EQU 201 A 1 HETATM 54 H H181 EQU . B . B 2 -28.289 0.711 -18.504 0.22 41.44 ? H181 EQU 201 A 1 HETATM 55 H H182 EQU . A . B 2 -26.998 -2.816 -16.112 0.78 66.01 ? H182 EQU 201 A 1 HETATM 56 H H182 EQU . B . B 2 -29.553 0.273 -17.758 0.22 41.44 ? H182 EQU 201 A 1 HETATM 57 H H191 EQU . A . B 2 -27.906 -1.674 -13.727 0.78 62.13 ? H191 EQU 201 A 1 HETATM 58 H H191 EQU . B . B 2 -27.489 1.818 -16.715 0.22 37.95 ? H191 EQU 201 A 1 HETATM 59 H H192 EQU . A . B 2 -26.45 -1.765 -14.197 0.78 62.13 ? H192 EQU 201 A 1 HETATM 60 H H192 EQU . B . B 2 -28.97 1.899 -16.334 0.22 37.95 ? H192 EQU 201 A 1 HETATM 61 H H241 EQU . A . B 2 -29.622 0.3 -18.13 0.78 72.46 ? H241 EQU 201 A 1 HETATM 62 H H241 EQU . B . B 2 -27.463 -3.273 -15.886 0.22 41.69 ? H241 EQU 201 A 1 HETATM 63 H H242 EQU . A . B 2 -28.401 0.253 -19.053 0.78 72.46 ? H242 EQU 201 A 1 HETATM 64 H H242 EQU . B . B 2 -28.935 -3.58 -15.588 0.22 41.69 ? H242 EQU 201 A 1 HETATM 65 H H251 EQU . A . B 2 -30.265 -1.636 -19.181 0.78 76.17 ? H251 EQU 201 A 1 HETATM 66 H H251 EQU . B . B 2 -27.995 -4.074 -17.985 0.22 43.51 ? H251 EQU 201 A 1 HETATM 67 H H252 EQU . A . B 2 -28.814 -1.912 -19.674 0.78 76.17 ? H252 EQU 201 A 1 HETATM 68 H H252 EQU . B . B 2 -29.492 -3.682 -17.823 0.22 43.51 ? H252 EQU 201 A 1 HETATM 69 H H271 EQU . A . B 2 -29.954 -1.39 -14.912 0.78 74.12 ? H271 EQU 201 A 1 HETATM 70 H H271 EQU . B . B 2 -26.062 -1.195 -18.236 0.22 43.44 ? H271 EQU 201 A 1 HETATM 71 H H272 EQU . A . B 2 -30.351 -0.511 -16.13 0.78 74.12 ? H272 EQU 201 A 1 HETATM 72 H H272 EQU . B . B 2 -26.062 -0.198 -17.044 0.22 43.44 ? H272 EQU 201 A 1 HETATM 73 H H273 EQU . A . B 2 -30.797 -1.974 -16.097 0.78 74.12 ? H273 EQU 201 A 1 HETATM 74 H H273 EQU . B . B 2 -26.082 -1.7 -16.753 0.22 43.44 ? H273 EQU 201 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 74 #