data_5UGL
#
_model_server_result.job_id            KBTqsKFs_Zf212P5myRAYg 
_model_server_result.datetime_utc      '2024-10-12 01:24:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ugl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    5UGL 
#
_exptl.entry_id    5UGL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5UGL 
_cell.length_a            67.215 
_cell.length_b            78.786 
_cell.length_c            116.544 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,E,F,H 1 1 
A,C,D,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     5UGL 
_atom_sites.fract_transf_matrix[1][1]    0.014878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00858 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 B 1 801 2 SO4 SO4 . 
D 3 ANP B 1 802 2 ANP ANP . 
E 2 SO4 A 1 801 1 SO4 SO4 . 
F 3 ANP A 1 802 1 ANP ANP . 
G 4 HOH B 1 901 123 HOH HOH . 
G 4 HOH B 2 902 144 HOH HOH . 
G 4 HOH B 3 903 179 HOH HOH . 
G 4 HOH B 4 904 37 HOH HOH . 
G 4 HOH B 5 905 74 HOH HOH . 
G 4 HOH B 6 906 145 HOH HOH . 
G 4 HOH B 7 907 61 HOH HOH . 
G 4 HOH B 8 908 73 HOH HOH . 
G 4 HOH B 9 909 172 HOH HOH . 
G 4 HOH B 10 910 69 HOH HOH . 
G 4 HOH B 11 911 29 HOH HOH . 
G 4 HOH B 12 912 5 HOH HOH . 
G 4 HOH B 13 913 65 HOH HOH . 
G 4 HOH B 14 914 43 HOH HOH . 
G 4 HOH B 15 915 77 HOH HOH . 
G 4 HOH B 16 916 32 HOH HOH . 
G 4 HOH B 17 917 110 HOH HOH . 
G 4 HOH B 18 918 40 HOH HOH . 
G 4 HOH B 19 919 105 HOH HOH . 
G 4 HOH B 20 920 150 HOH HOH . 
G 4 HOH B 21 921 60 HOH HOH . 
G 4 HOH B 22 922 39 HOH HOH . 
G 4 HOH B 23 923 50 HOH HOH . 
G 4 HOH B 24 924 44 HOH HOH . 
G 4 HOH B 25 925 46 HOH HOH . 
G 4 HOH B 26 926 59 HOH HOH . 
G 4 HOH B 27 927 36 HOH HOH . 
G 4 HOH B 28 928 116 HOH HOH . 
G 4 HOH B 29 929 53 HOH HOH . 
G 4 HOH B 30 930 146 HOH HOH . 
G 4 HOH B 31 931 78 HOH HOH . 
G 4 HOH B 32 932 8 HOH HOH . 
G 4 HOH B 33 933 51 HOH HOH . 
G 4 HOH B 34 934 31 HOH HOH . 
G 4 HOH B 35 935 63 HOH HOH . 
G 4 HOH B 36 936 35 HOH HOH . 
G 4 HOH B 37 937 28 HOH HOH . 
G 4 HOH B 38 938 188 HOH HOH . 
G 4 HOH B 39 939 54 HOH HOH . 
G 4 HOH B 40 940 57 HOH HOH . 
G 4 HOH B 41 941 121 HOH HOH . 
G 4 HOH B 42 942 15 HOH HOH . 
G 4 HOH B 43 943 128 HOH HOH . 
G 4 HOH B 44 944 70 HOH HOH . 
G 4 HOH B 45 945 55 HOH HOH . 
G 4 HOH B 46 946 38 HOH HOH . 
G 4 HOH B 47 947 47 HOH HOH . 
G 4 HOH B 48 948 71 HOH HOH . 
G 4 HOH B 49 949 52 HOH HOH . 
G 4 HOH B 50 950 56 HOH HOH . 
G 4 HOH B 51 951 147 HOH HOH . 
G 4 HOH B 52 952 91 HOH HOH . 
G 4 HOH B 53 953 30 HOH HOH . 
G 4 HOH B 54 954 141 HOH HOH . 
G 4 HOH B 55 955 176 HOH HOH . 
G 4 HOH B 56 956 173 HOH HOH . 
G 4 HOH B 57 957 178 HOH HOH . 
G 4 HOH B 58 958 64 HOH HOH . 
G 4 HOH B 59 959 148 HOH HOH . 
G 4 HOH B 60 960 58 HOH HOH . 
G 4 HOH B 61 961 45 HOH HOH . 
G 4 HOH B 62 962 152 HOH HOH . 
G 4 HOH B 63 963 22 HOH HOH . 
G 4 HOH B 64 964 174 HOH HOH . 
G 4 HOH B 65 965 72 HOH HOH . 
G 4 HOH B 66 966 106 HOH HOH . 
G 4 HOH B 67 967 143 HOH HOH . 
G 4 HOH B 68 968 151 HOH HOH . 
G 4 HOH B 69 969 180 HOH HOH . 
G 4 HOH B 70 970 130 HOH HOH . 
G 4 HOH B 71 971 122 HOH HOH . 
G 4 HOH B 72 972 41 HOH HOH . 
G 4 HOH B 73 973 149 HOH HOH . 
G 4 HOH B 74 974 153 HOH HOH . 
G 4 HOH B 75 975 75 HOH HOH . 
G 4 HOH B 76 976 33 HOH HOH . 
G 4 HOH B 77 977 129 HOH HOH . 
G 4 HOH B 78 978 42 HOH HOH . 
G 4 HOH B 79 979 175 HOH HOH . 
G 4 HOH B 80 980 67 HOH HOH . 
G 4 HOH B 81 981 49 HOH HOH . 
G 4 HOH B 82 982 142 HOH HOH . 
G 4 HOH B 83 983 177 HOH HOH . 
G 4 HOH B 84 984 187 HOH HOH . 
G 4 HOH B 85 985 117 HOH HOH . 
G 4 HOH B 86 986 127 HOH HOH . 
G 4 HOH B 87 987 186 HOH HOH . 
H 4 HOH A 1 901 27 HOH HOH . 
H 4 HOH A 2 902 76 HOH HOH . 
H 4 HOH A 3 903 139 HOH HOH . 
H 4 HOH A 4 904 6 HOH HOH . 
H 4 HOH A 5 905 160 HOH HOH . 
H 4 HOH A 6 906 155 HOH HOH . 
H 4 HOH A 7 907 136 HOH HOH . 
H 4 HOH A 8 908 138 HOH HOH . 
H 4 HOH A 9 909 112 HOH HOH . 
H 4 HOH A 10 910 107 HOH HOH . 
H 4 HOH A 11 911 34 HOH HOH . 
H 4 HOH A 12 912 21 HOH HOH . 
H 4 HOH A 13 913 183 HOH HOH . 
H 4 HOH A 14 914 68 HOH HOH . 
H 4 HOH A 15 915 101 HOH HOH . 
H 4 HOH A 16 916 162 HOH HOH . 
H 4 HOH A 17 917 16 HOH HOH . 
H 4 HOH A 18 918 126 HOH HOH . 
H 4 HOH A 19 919 4 HOH HOH . 
H 4 HOH A 20 920 103 HOH HOH . 
H 4 HOH A 21 921 88 HOH HOH . 
H 4 HOH A 22 922 185 HOH HOH . 
H 4 HOH A 23 923 2 HOH HOH . 
H 4 HOH A 24 924 166 HOH HOH . 
H 4 HOH A 25 925 87 HOH HOH . 
H 4 HOH A 26 926 3 HOH HOH . 
H 4 HOH A 27 927 167 HOH HOH . 
H 4 HOH A 28 928 133 HOH HOH . 
H 4 HOH A 29 929 20 HOH HOH . 
H 4 HOH A 30 930 81 HOH HOH . 
H 4 HOH A 31 931 23 HOH HOH . 
H 4 HOH A 32 932 170 HOH HOH . 
H 4 HOH A 33 933 111 HOH HOH . 
H 4 HOH A 34 934 115 HOH HOH . 
H 4 HOH A 35 935 108 HOH HOH . 
H 4 HOH A 36 936 164 HOH HOH . 
H 4 HOH A 37 937 168 HOH HOH . 
H 4 HOH A 38 938 9 HOH HOH . 
H 4 HOH A 39 939 96 HOH HOH . 
H 4 HOH A 40 940 169 HOH HOH . 
H 4 HOH A 41 941 132 HOH HOH . 
H 4 HOH A 42 942 17 HOH HOH . 
H 4 HOH A 43 943 24 HOH HOH . 
H 4 HOH A 44 944 12 HOH HOH . 
H 4 HOH A 45 945 113 HOH HOH . 
H 4 HOH A 46 946 83 HOH HOH . 
H 4 HOH A 47 947 137 HOH HOH . 
H 4 HOH A 48 948 109 HOH HOH . 
H 4 HOH A 49 949 161 HOH HOH . 
H 4 HOH A 50 950 1 HOH HOH . 
H 4 HOH A 51 951 10 HOH HOH . 
H 4 HOH A 52 952 92 HOH HOH . 
H 4 HOH A 53 953 93 HOH HOH . 
H 4 HOH A 54 954 25 HOH HOH . 
H 4 HOH A 55 955 80 HOH HOH . 
H 4 HOH A 56 956 66 HOH HOH . 
H 4 HOH A 57 957 134 HOH HOH . 
H 4 HOH A 58 958 97 HOH HOH . 
H 4 HOH A 59 959 13 HOH HOH . 
H 4 HOH A 60 960 11 HOH HOH . 
H 4 HOH A 61 961 18 HOH HOH . 
H 4 HOH A 62 962 158 HOH HOH . 
H 4 HOH A 63 963 131 HOH HOH . 
H 4 HOH A 64 964 165 HOH HOH . 
H 4 HOH A 65 965 184 HOH HOH . 
H 4 HOH A 66 966 163 HOH HOH . 
H 4 HOH A 67 967 62 HOH HOH . 
H 4 HOH A 68 968 156 HOH HOH . 
H 4 HOH A 69 969 118 HOH HOH . 
H 4 HOH A 70 970 26 HOH HOH . 
H 4 HOH A 71 971 7 HOH HOH . 
H 4 HOH A 72 972 95 HOH HOH . 
H 4 HOH A 73 973 102 HOH HOH . 
H 4 HOH A 74 974 19 HOH HOH . 
H 4 HOH A 75 975 119 HOH HOH . 
H 4 HOH A 76 976 90 HOH HOH . 
H 4 HOH A 77 977 125 HOH HOH . 
H 4 HOH A 78 978 189 HOH HOH . 
H 4 HOH A 79 979 99 HOH HOH . 
H 4 HOH A 80 980 114 HOH HOH . 
H 4 HOH A 81 981 79 HOH HOH . 
H 4 HOH A 82 982 89 HOH HOH . 
H 4 HOH A 83 983 171 HOH HOH . 
H 4 HOH A 84 984 98 HOH HOH . 
H 4 HOH A 85 985 154 HOH HOH . 
H 4 HOH A 86 986 159 HOH HOH . 
H 4 HOH A 87 987 82 HOH HOH . 
H 4 HOH A 88 988 182 HOH HOH . 
H 4 HOH A 89 989 181 HOH HOH . 
H 4 HOH A 90 990 120 HOH HOH . 
H 4 HOH A 91 991 135 HOH HOH . 
H 4 HOH A 92 992 140 HOH HOH . 
H 4 HOH A 93 993 104 HOH HOH . 
H 4 HOH A 94 994 157 HOH HOH . 
H 4 HOH A 95 995 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . D 3 40.837 36.557 13.662 1 94.36 ? PG ANP 802 B 1 
HETATM 2 O O1G ANP . . . D 3 41.5 36.456 12.267 1 92.59 ? O1G ANP 802 B 1 
HETATM 3 O O2G ANP . . . D 3 39.343 36.904 13.443 1 94.69 ? O2G ANP 802 B 1 
HETATM 4 O O3G ANP . . . D 3 40.93 35.223 14.342 1 94.93 ? O3G ANP 802 B 1 
HETATM 5 P PB ANP . . . D 3 41.244 37.91 16.193 1 87.11 ? PB ANP 802 B 1 
HETATM 6 O O1B ANP . . . D 3 39.687 37.975 16.44 1 86.74 ? O1B ANP 802 B 1 
HETATM 7 O O2B ANP . . . D 3 41.806 36.724 16.948 1 85.36 ? O2B ANP 802 B 1 
HETATM 8 N N3B ANP . . . D 3 41.568 37.779 14.543 1 92.32 ? N3B ANP 802 B 1 
HETATM 9 P PA ANP . . . D 3 42.658 39.41 18.156 1 69.89 ? PA ANP 802 B 1 
HETATM 10 O O1A ANP . . . D 3 43.943 38.614 18.088 1 69.92 ? O1A ANP 802 B 1 
HETATM 11 O O2A ANP . . . D 3 41.823 38.905 19.309 1 70.09 ? O2A ANP 802 B 1 
HETATM 12 O O3A ANP . . . D 3 41.895 39.276 16.759 1 80.61 ? O3A ANP 802 B 1 
HETATM 13 O O5' ANP . . . D 3 42.979 40.936 18.398 1 58.99 ? O5' ANP 802 B 1 
HETATM 14 C C5' ANP . . . D 3 42.096 41.92 17.957 1 48.7 ? C5' ANP 802 B 1 
HETATM 15 C C4' ANP . . . D 3 42.793 43.192 17.799 1 37.94 ? C4' ANP 802 B 1 
HETATM 16 O O4' ANP . . . D 3 43.546 43.483 19.023 1 30.75 ? O4' ANP 802 B 1 
HETATM 17 C C3' ANP . . . D 3 43.788 43.155 16.73 1 38.33 ? C3' ANP 802 B 1 
HETATM 18 O O3' ANP . . . D 3 43.252 43.425 15.45 1 43.05 ? O3' ANP 802 B 1 
HETATM 19 C C2' ANP . . . D 3 44.738 44.163 17.101 1 34.39 ? C2' ANP 802 B 1 
HETATM 20 O O2' ANP . . . D 3 44.336 45.481 16.7 1 34.21 ? O2' ANP 802 B 1 
HETATM 21 C C1' ANP . . . D 3 44.801 44.088 18.545 1 28.29 ? C1' ANP 802 B 1 
HETATM 22 N N9 ANP . . . D 3 45.941 43.316 18.865 1 18.44 ? N9 ANP 802 B 1 
HETATM 23 C C8 ANP . . . D 3 46.048 41.972 18.917 1 16.02 ? C8 ANP 802 B 1 
HETATM 24 N N7 ANP . . . D 3 47.287 41.624 19.244 1 15.49 ? N7 ANP 802 B 1 
HETATM 25 C C5 ANP . . . D 3 48.022 42.755 19.396 1 15.57 ? C5 ANP 802 B 1 
HETATM 26 C C6 ANP . . . D 3 49.356 43.017 19.726 1 15.83 ? C6 ANP 802 B 1 
HETATM 27 N N6 ANP . . . D 3 50.277 41.926 19.978 1 11.42 ? N6 ANP 802 B 1 
HETATM 28 N N1 ANP . . . D 3 49.769 44.278 19.816 1 16.29 ? N1 ANP 802 B 1 
HETATM 29 C C2 ANP . . . D 3 48.951 45.324 19.582 1 19.19 ? C2 ANP 802 B 1 
HETATM 30 N N3 ANP . . . D 3 47.645 45.122 19.245 1 17.53 ? N3 ANP 802 B 1 
HETATM 31 C C4 ANP . . . D 3 47.177 43.856 19.151 1 15.77 ? C4 ANP 802 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#