data_5UGT
#
_model_server_result.job_id            vcIPIKIxJlabdAfa3vSBlQ 
_model_server_result.datetime_utc      '2024-11-29 11:48:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ugt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    5UGT 
#
_exptl.entry_id    5UGT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.26 
_cell.angle_gamma         90 
_cell.entry_id            5UGT 
_cell.length_a            87.924 
_cell.length_b            92.785 
_cell.length_c            180.426 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UGT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     5UGT 
_atom_sites.fract_transf_matrix[1][1]    0.011373 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001448 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010778 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005587 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 301 2 NAD NAD . 
F 3 XTW A 1 302 1 XTW I04 . 
G 2 NAD B 1 301 3 NAD NAD . 
H 3 XTW B 1 302 4 XTW I04 . 
I 2 NAD E 1 301 1 NAD NAD . 
J 3 XTW E 1 302 2 XTW I04 . 
K 2 NAD G 1 301 4 NAD NAD . 
L 3 XTW G 1 302 3 XTW I04 . 
M 4 HOH A 1 401 245 HOH HOH . 
M 4 HOH A 2 402 256 HOH HOH . 
M 4 HOH A 3 403 47 HOH HOH . 
M 4 HOH A 4 404 223 HOH HOH . 
M 4 HOH A 5 405 93 HOH HOH . 
M 4 HOH A 6 406 261 HOH HOH . 
M 4 HOH A 7 407 280 HOH HOH . 
M 4 HOH A 8 408 304 HOH HOH . 
M 4 HOH A 9 409 45 HOH HOH . 
M 4 HOH A 10 410 317 HOH HOH . 
M 4 HOH A 11 411 290 HOH HOH . 
M 4 HOH A 12 412 107 HOH HOH . 
M 4 HOH A 13 413 232 HOH HOH . 
M 4 HOH A 14 414 277 HOH HOH . 
M 4 HOH A 15 415 27 HOH HOH . 
M 4 HOH A 16 416 146 HOH HOH . 
M 4 HOH A 17 417 30 HOH HOH . 
M 4 HOH A 18 418 165 HOH HOH . 
M 4 HOH A 19 419 76 HOH HOH . 
M 4 HOH A 20 420 143 HOH HOH . 
M 4 HOH A 21 421 178 HOH HOH . 
M 4 HOH A 22 422 311 HOH HOH . 
M 4 HOH A 23 423 327 HOH HOH . 
M 4 HOH A 24 424 291 HOH HOH . 
M 4 HOH A 25 425 50 HOH HOH . 
M 4 HOH A 26 426 26 HOH HOH . 
M 4 HOH A 27 427 121 HOH HOH . 
M 4 HOH A 28 428 312 HOH HOH . 
M 4 HOH A 29 429 171 HOH HOH . 
M 4 HOH A 30 430 11 HOH HOH . 
M 4 HOH A 31 431 276 HOH HOH . 
M 4 HOH A 32 432 302 HOH HOH . 
M 4 HOH A 33 433 293 HOH HOH . 
M 4 HOH A 34 434 213 HOH HOH . 
M 4 HOH A 35 435 289 HOH HOH . 
M 4 HOH A 36 436 286 HOH HOH . 
M 4 HOH A 37 437 250 HOH HOH . 
M 4 HOH A 38 438 309 HOH HOH . 
M 4 HOH A 39 439 248 HOH HOH . 
M 4 HOH A 40 440 249 HOH HOH . 
M 4 HOH A 41 441 260 HOH HOH . 
M 4 HOH A 42 442 287 HOH HOH . 
M 4 HOH A 43 443 295 HOH HOH . 
M 4 HOH A 44 444 283 HOH HOH . 
M 4 HOH A 45 445 196 HOH HOH . 
M 4 HOH A 46 446 247 HOH HOH . 
M 4 HOH A 47 447 284 HOH HOH . 
M 4 HOH A 48 448 294 HOH HOH . 
N 4 HOH B 1 401 219 HOH HOH . 
N 4 HOH B 2 402 306 HOH HOH . 
N 4 HOH B 3 403 112 HOH HOH . 
N 4 HOH B 4 404 113 HOH HOH . 
N 4 HOH B 5 405 81 HOH HOH . 
N 4 HOH B 6 406 241 HOH HOH . 
N 4 HOH B 7 407 329 HOH HOH . 
N 4 HOH B 8 408 125 HOH HOH . 
N 4 HOH B 9 409 126 HOH HOH . 
N 4 HOH B 10 410 8 HOH HOH . 
N 4 HOH B 11 411 181 HOH HOH . 
N 4 HOH B 12 412 308 HOH HOH . 
N 4 HOH B 13 413 106 HOH HOH . 
N 4 HOH B 14 414 262 HOH HOH . 
N 4 HOH B 15 415 15 HOH HOH . 
N 4 HOH B 16 416 144 HOH HOH . 
N 4 HOH B 17 417 16 HOH HOH . 
N 4 HOH B 18 418 266 HOH HOH . 
N 4 HOH B 19 419 263 HOH HOH . 
N 4 HOH B 20 420 267 HOH HOH . 
N 4 HOH B 21 421 72 HOH HOH . 
N 4 HOH B 22 422 265 HOH HOH . 
N 4 HOH B 23 423 305 HOH HOH . 
N 4 HOH B 24 424 59 HOH HOH . 
O 4 HOH E 1 401 177 HOH HOH . 
O 4 HOH E 2 402 234 HOH HOH . 
O 4 HOH E 3 403 270 HOH HOH . 
O 4 HOH E 4 404 58 HOH HOH . 
O 4 HOH E 5 405 240 HOH HOH . 
O 4 HOH E 6 406 63 HOH HOH . 
O 4 HOH E 7 407 326 HOH HOH . 
O 4 HOH E 8 408 324 HOH HOH . 
O 4 HOH E 9 409 254 HOH HOH . 
O 4 HOH E 10 410 328 HOH HOH . 
O 4 HOH E 11 411 174 HOH HOH . 
O 4 HOH E 12 412 55 HOH HOH . 
O 4 HOH E 13 413 22 HOH HOH . 
O 4 HOH E 14 414 310 HOH HOH . 
O 4 HOH E 15 415 66 HOH HOH . 
O 4 HOH E 16 416 255 HOH HOH . 
O 4 HOH E 17 417 325 HOH HOH . 
O 4 HOH E 18 418 264 HOH HOH . 
O 4 HOH E 19 419 323 HOH HOH . 
O 4 HOH E 20 420 268 HOH HOH . 
O 4 HOH E 21 421 77 HOH HOH . 
O 4 HOH E 22 422 31 HOH HOH . 
O 4 HOH E 23 423 321 HOH HOH . 
O 4 HOH E 24 424 135 HOH HOH . 
O 4 HOH E 25 425 282 HOH HOH . 
O 4 HOH E 26 426 315 HOH HOH . 
O 4 HOH E 27 427 210 HOH HOH . 
O 4 HOH E 28 428 275 HOH HOH . 
O 4 HOH E 29 429 173 HOH HOH . 
O 4 HOH E 30 430 279 HOH HOH . 
O 4 HOH E 31 431 313 HOH HOH . 
O 4 HOH E 32 432 301 HOH HOH . 
O 4 HOH E 33 433 298 HOH HOH . 
O 4 HOH E 34 434 319 HOH HOH . 
O 4 HOH E 35 435 297 HOH HOH . 
O 4 HOH E 36 436 296 HOH HOH . 
O 4 HOH E 37 437 41 HOH HOH . 
O 4 HOH E 38 438 320 HOH HOH . 
O 4 HOH E 39 439 269 HOH HOH . 
O 4 HOH E 40 440 318 HOH HOH . 
O 4 HOH E 41 441 299 HOH HOH . 
O 4 HOH E 42 442 300 HOH HOH . 
O 4 HOH E 43 443 307 HOH HOH . 
O 4 HOH E 44 444 288 HOH HOH . 
P 4 HOH G 1 401 20 HOH HOH . 
P 4 HOH G 2 402 1 HOH HOH . 
P 4 HOH G 3 403 97 HOH HOH . 
P 4 HOH G 4 404 9 HOH HOH . 
P 4 HOH G 5 405 330 HOH HOH . 
P 4 HOH G 6 406 21 HOH HOH . 
P 4 HOH G 7 407 322 HOH HOH . 
P 4 HOH G 8 408 331 HOH HOH . 
P 4 HOH G 9 409 163 HOH HOH . 
P 4 HOH G 10 410 132 HOH HOH . 
P 4 HOH G 11 411 239 HOH HOH . 
P 4 HOH G 12 412 7 HOH HOH . 
P 4 HOH G 13 413 70 HOH HOH . 
P 4 HOH G 14 414 273 HOH HOH . 
P 4 HOH G 15 415 316 HOH HOH . 
P 4 HOH G 16 416 252 HOH HOH . 
P 4 HOH G 17 417 253 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . I 2 -24.508 49.173 -40.49 1 39.54 ? PA NAD 301 E 1 
HETATM 2 O O1A NAD . . . I 2 -23.288 49.554 -39.717 1 37.62 ? O1A NAD 301 E 1 
HETATM 3 O O2A NAD . . . I 2 -24.825 49.677 -41.904 1 31.05 ? O2A NAD 301 E 1 
HETATM 4 O O5B NAD . . . I 2 -25.812 49.663 -39.671 1 38.27 ? O5B NAD 301 E 1 
HETATM 5 C C5B NAD . . . I 2 -25.844 49.567 -38.223 1 37.42 ? C5B NAD 301 E 1 
HETATM 6 C C4B NAD . . . I 2 -26.548 50.831 -37.792 1 40.37 ? C4B NAD 301 E 1 
HETATM 7 O O4B NAD . . . I 2 -26.695 50.828 -36.359 1 39.88 ? O4B NAD 301 E 1 
HETATM 8 C C3B NAD . . . I 2 -25.83 52.152 -38.151 1 39.09 ? C3B NAD 301 E 1 
HETATM 9 O O3B NAD . . . I 2 -26.66 52.927 -38.997 1 34.15 ? O3B NAD 301 E 1 
HETATM 10 C C2B NAD . . . I 2 -25.531 52.78 -36.783 1 39.44 ? C2B NAD 301 E 1 
HETATM 11 O O2B NAD . . . I 2 -25.518 54.205 -36.815 1 45.39 ? O2B NAD 301 E 1 
HETATM 12 C C1B NAD . . . I 2 -26.679 52.18 -35.989 1 38.76 ? C1B NAD 301 E 1 
HETATM 13 N N9A NAD . . . I 2 -26.618 52.281 -34.543 1 38.08 ? N9A NAD 301 E 1 
HETATM 14 C C8A NAD . . . I 2 -25.636 51.894 -33.664 1 38.28 ? C8A NAD 301 E 1 
HETATM 15 N N7A NAD . . . I 2 -25.856 52.262 -32.42 1 38.87 ? N7A NAD 301 E 1 
HETATM 16 C C5A NAD . . . I 2 -27.062 52.952 -32.492 1 38.87 ? C5A NAD 301 E 1 
HETATM 17 C C6A NAD . . . I 2 -27.792 53.69 -31.542 1 35.76 ? C6A NAD 301 E 1 
HETATM 18 N N6A NAD . . . I 2 -27.371 53.907 -30.295 1 38.04 ? N6A NAD 301 E 1 
HETATM 19 N N1A NAD . . . I 2 -28.95 54.267 -31.947 1 34.78 ? N1A NAD 301 E 1 
HETATM 20 C C2A NAD . . . I 2 -29.343 54.115 -33.22 1 37.88 ? C2A NAD 301 E 1 
HETATM 21 N N3A NAD . . . I 2 -28.722 53.483 -34.221 1 37.38 ? N3A NAD 301 E 1 
HETATM 22 C C4A NAD . . . I 2 -27.563 52.932 -33.788 1 40.09 ? C4A NAD 301 E 1 
HETATM 23 O O3 NAD . . . I 2 -24.932 47.748 -40.841 1 40.75 ? O3 NAD 301 E 1 
HETATM 24 P PN NAD . . . I 2 -25.984 46.619 -41.248 1 37.3 ? PN NAD 301 E 1 
HETATM 25 O O1N NAD . . . I 2 -25.122 45.454 -41.495 1 51.38 -1 O1N NAD 301 E 1 
HETATM 26 O O2N NAD . . . I 2 -26.846 47.035 -42.38 1 32.93 ? O2N NAD 301 E 1 
HETATM 27 O O5D NAD . . . I 2 -26.681 46.44 -39.787 1 33.97 ? O5D NAD 301 E 1 
HETATM 28 C C5D NAD . . . I 2 -28.121 46.523 -39.652 1 35.21 ? C5D NAD 301 E 1 
HETATM 29 C C4D NAD . . . I 2 -28.79 45.394 -38.894 1 37.92 ? C4D NAD 301 E 1 
HETATM 30 O O4D NAD . . . I 2 -28.652 44.15 -39.624 1 41.2 ? O4D NAD 301 E 1 
HETATM 31 C C3D NAD . . . I 2 -28.277 45.094 -37.481 1 38.39 ? C3D NAD 301 E 1 
HETATM 32 O O3D NAD . . . I 2 -29.349 44.786 -36.569 1 32.39 ? O3D NAD 301 E 1 
HETATM 33 C C2D NAD . . . I 2 -27.315 43.928 -37.743 1 39.26 ? C2D NAD 301 E 1 
HETATM 34 O O2D NAD . . . I 2 -27.145 43.089 -36.608 1 39.98 ? O2D NAD 301 E 1 
HETATM 35 C C1D NAD . . . I 2 -28.186 43.177 -38.76 1 40.37 ? C1D NAD 301 E 1 
HETATM 36 N N1N NAD . . . I 2 -27.56 42.16 -39.687 1 44.86 ? N1N NAD 301 E 1 
HETATM 37 C C2N NAD . . . I 2 -26.464 42.403 -40.458 1 48.85 ? C2N NAD 301 E 1 
HETATM 38 C C3N NAD . . . I 2 -26.128 41.515 -41.466 1 52.96 ? C3N NAD 301 E 1 
HETATM 39 C C7N NAD . . . I 2 -24.999 41.702 -42.42 1 54.39 ? C7N NAD 301 E 1 
HETATM 40 O O7N NAD . . . I 2 -24.453 40.73 -42.896 1 52.54 ? O7N NAD 301 E 1 
HETATM 41 N N7N NAD . . . I 2 -24.654 42.931 -42.745 1 55.59 ? N7N NAD 301 E 1 
HETATM 42 C C4N NAD . . . I 2 -26.908 40.379 -41.641 1 54.67 ? C4N NAD 301 E 1 
HETATM 43 C C5N NAD . . . I 2 -27.978 40.141 -40.815 1 50.91 ? C5N NAD 301 E 1 
HETATM 44 C C6N NAD . . . I 2 -28.286 41.038 -39.839 1 50.73 ? C6N NAD 301 E 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#