data_5UGU # _model_server_result.job_id S4ExTcuJK1JVxo1J1_dwSA _model_server_result.datetime_utc '2024-11-07 15:55:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ugu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5UGU # _exptl.entry_id 5UGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UGU _cell.length_a 90.655 _cell.length_b 90.655 _cell.length_c 182.88 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 5UGU _atom_sites.fract_transf_matrix[1][1] 0.011031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 1 NAD NAD . C 3 XTV A 1 302 1 XTV I06 . D 4 HOH A 1 401 87 HOH HOH . D 4 HOH A 2 402 236 HOH HOH . D 4 HOH A 3 403 39 HOH HOH . D 4 HOH A 4 404 274 HOH HOH . D 4 HOH A 5 405 29 HOH HOH . D 4 HOH A 6 406 93 HOH HOH . D 4 HOH A 7 407 83 HOH HOH . D 4 HOH A 8 408 201 HOH HOH . D 4 HOH A 9 409 90 HOH HOH . D 4 HOH A 10 410 257 HOH HOH . D 4 HOH A 11 411 171 HOH HOH . D 4 HOH A 12 412 174 HOH HOH . D 4 HOH A 13 413 102 HOH HOH . D 4 HOH A 14 414 261 HOH HOH . D 4 HOH A 15 415 146 HOH HOH . D 4 HOH A 16 416 151 HOH HOH . D 4 HOH A 17 417 58 HOH HOH . D 4 HOH A 18 418 31 HOH HOH . D 4 HOH A 19 419 118 HOH HOH . D 4 HOH A 20 420 10 HOH HOH . D 4 HOH A 21 421 22 HOH HOH . D 4 HOH A 22 422 56 HOH HOH . D 4 HOH A 23 423 66 HOH HOH . D 4 HOH A 24 424 157 HOH HOH . D 4 HOH A 25 425 139 HOH HOH . D 4 HOH A 26 426 266 HOH HOH . D 4 HOH A 27 427 94 HOH HOH . D 4 HOH A 28 428 109 HOH HOH . D 4 HOH A 29 429 194 HOH HOH . D 4 HOH A 30 430 19 HOH HOH . D 4 HOH A 31 431 43 HOH HOH . D 4 HOH A 32 432 61 HOH HOH . D 4 HOH A 33 433 231 HOH HOH . D 4 HOH A 34 434 38 HOH HOH . D 4 HOH A 35 435 55 HOH HOH . D 4 HOH A 36 436 170 HOH HOH . D 4 HOH A 37 437 11 HOH HOH . D 4 HOH A 38 438 20 HOH HOH . D 4 HOH A 39 439 95 HOH HOH . D 4 HOH A 40 440 96 HOH HOH . D 4 HOH A 41 441 57 HOH HOH . D 4 HOH A 42 442 18 HOH HOH . D 4 HOH A 43 443 248 HOH HOH . D 4 HOH A 44 444 37 HOH HOH . D 4 HOH A 45 445 4 HOH HOH . D 4 HOH A 46 446 192 HOH HOH . D 4 HOH A 47 447 106 HOH HOH . D 4 HOH A 48 448 54 HOH HOH . D 4 HOH A 49 449 5 HOH HOH . D 4 HOH A 50 450 7 HOH HOH . D 4 HOH A 51 451 112 HOH HOH . D 4 HOH A 52 452 222 HOH HOH . D 4 HOH A 53 453 24 HOH HOH . D 4 HOH A 54 454 256 HOH HOH . D 4 HOH A 55 455 21 HOH HOH . D 4 HOH A 56 456 26 HOH HOH . D 4 HOH A 57 457 27 HOH HOH . D 4 HOH A 58 458 123 HOH HOH . D 4 HOH A 59 459 15 HOH HOH . D 4 HOH A 60 460 3 HOH HOH . D 4 HOH A 61 461 23 HOH HOH . D 4 HOH A 62 462 45 HOH HOH . D 4 HOH A 63 463 277 HOH HOH . D 4 HOH A 64 464 14 HOH HOH . D 4 HOH A 65 465 53 HOH HOH . D 4 HOH A 66 466 12 HOH HOH . D 4 HOH A 67 467 183 HOH HOH . D 4 HOH A 68 468 238 HOH HOH . D 4 HOH A 69 469 129 HOH HOH . D 4 HOH A 70 470 76 HOH HOH . D 4 HOH A 71 471 34 HOH HOH . D 4 HOH A 72 472 52 HOH HOH . D 4 HOH A 73 473 51 HOH HOH . D 4 HOH A 74 474 276 HOH HOH . D 4 HOH A 75 475 271 HOH HOH . D 4 HOH A 76 476 88 HOH HOH . D 4 HOH A 77 477 101 HOH HOH . D 4 HOH A 78 478 117 HOH HOH . D 4 HOH A 79 479 17 HOH HOH . D 4 HOH A 80 480 116 HOH HOH . D 4 HOH A 81 481 288 HOH HOH . D 4 HOH A 82 482 135 HOH HOH . D 4 HOH A 83 483 273 HOH HOH . D 4 HOH A 84 484 145 HOH HOH . D 4 HOH A 85 485 13 HOH HOH . D 4 HOH A 86 486 28 HOH HOH . D 4 HOH A 87 487 70 HOH HOH . D 4 HOH A 88 488 67 HOH HOH . D 4 HOH A 89 489 33 HOH HOH . D 4 HOH A 90 490 291 HOH HOH . D 4 HOH A 91 491 84 HOH HOH . D 4 HOH A 92 492 30 HOH HOH . D 4 HOH A 93 493 36 HOH HOH . D 4 HOH A 94 494 131 HOH HOH . D 4 HOH A 95 495 259 HOH HOH . D 4 HOH A 96 496 110 HOH HOH . D 4 HOH A 97 497 16 HOH HOH . D 4 HOH A 98 498 60 HOH HOH . D 4 HOH A 99 499 46 HOH HOH . D 4 HOH A 100 500 6 HOH HOH . D 4 HOH A 101 501 42 HOH HOH . D 4 HOH A 102 502 269 HOH HOH . D 4 HOH A 103 503 286 HOH HOH . D 4 HOH A 104 504 82 HOH HOH . D 4 HOH A 105 505 44 HOH HOH . D 4 HOH A 106 506 2 HOH HOH . D 4 HOH A 107 507 32 HOH HOH . D 4 HOH A 108 508 75 HOH HOH . D 4 HOH A 109 509 173 HOH HOH . D 4 HOH A 110 510 193 HOH HOH . D 4 HOH A 111 511 71 HOH HOH . D 4 HOH A 112 512 258 HOH HOH . D 4 HOH A 113 513 59 HOH HOH . D 4 HOH A 114 514 48 HOH HOH . D 4 HOH A 115 515 158 HOH HOH . D 4 HOH A 116 516 159 HOH HOH . D 4 HOH A 117 517 287 HOH HOH . D 4 HOH A 118 518 156 HOH HOH . D 4 HOH A 119 519 283 HOH HOH . D 4 HOH A 120 520 195 HOH HOH . D 4 HOH A 121 521 8 HOH HOH . D 4 HOH A 122 522 240 HOH HOH . D 4 HOH A 123 523 282 HOH HOH . D 4 HOH A 124 524 292 HOH HOH . D 4 HOH A 125 525 115 HOH HOH . D 4 HOH A 126 526 89 HOH HOH . D 4 HOH A 127 527 35 HOH HOH . D 4 HOH A 128 528 104 HOH HOH . D 4 HOH A 129 529 128 HOH HOH . D 4 HOH A 130 530 98 HOH HOH . D 4 HOH A 131 531 267 HOH HOH . D 4 HOH A 132 532 103 HOH HOH . D 4 HOH A 133 533 177 HOH HOH . D 4 HOH A 134 534 136 HOH HOH . D 4 HOH A 135 535 125 HOH HOH . D 4 HOH A 136 536 124 HOH HOH . D 4 HOH A 137 537 289 HOH HOH . D 4 HOH A 138 538 97 HOH HOH . D 4 HOH A 139 539 210 HOH HOH . D 4 HOH A 140 540 243 HOH HOH . D 4 HOH A 141 541 25 HOH HOH . D 4 HOH A 142 542 107 HOH HOH . D 4 HOH A 143 543 111 HOH HOH . D 4 HOH A 144 544 284 HOH HOH . D 4 HOH A 145 545 114 HOH HOH . D 4 HOH A 146 546 50 HOH HOH . D 4 HOH A 147 547 144 HOH HOH . D 4 HOH A 148 548 249 HOH HOH . D 4 HOH A 149 549 252 HOH HOH . D 4 HOH A 150 550 40 HOH HOH . D 4 HOH A 151 551 223 HOH HOH . D 4 HOH A 152 552 241 HOH HOH . D 4 HOH A 153 553 285 HOH HOH . D 4 HOH A 154 554 41 HOH HOH . D 4 HOH A 155 555 290 HOH HOH . D 4 HOH A 156 556 49 HOH HOH . D 4 HOH A 157 557 100 HOH HOH . D 4 HOH A 158 558 264 HOH HOH . D 4 HOH A 159 559 247 HOH HOH . D 4 HOH A 160 560 92 HOH HOH . D 4 HOH A 161 561 47 HOH HOH . D 4 HOH A 162 562 281 HOH HOH . D 4 HOH A 163 563 172 HOH HOH . D 4 HOH A 164 564 245 HOH HOH . D 4 HOH A 165 565 275 HOH HOH . D 4 HOH A 166 566 185 HOH HOH . D 4 HOH A 167 567 99 HOH HOH . D 4 HOH A 168 568 279 HOH HOH . D 4 HOH A 169 569 270 HOH HOH . D 4 HOH A 170 570 225 HOH HOH . D 4 HOH A 171 571 246 HOH HOH . D 4 HOH A 172 572 253 HOH HOH . D 4 HOH A 173 573 244 HOH HOH . D 4 HOH A 174 574 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -25.404 2.233 -12.352 1 40.59 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 -25.616 3.488 -13.103 1 39.32 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 -25.945 0.794 -12.637 1 31.71 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 -25.666 2.37 -10.786 1 34.66 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 -25.476 3.604 -10.07 1 33.77 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 -26.631 3.722 -9.119 1 35.97 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 -26.451 4.902 -8.305 1 37.95 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 -27.995 3.883 -9.825 1 38.69 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 -28.939 2.913 -9.43 1 42.15 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 -28.445 5.266 -9.399 1 40.28 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 -29.836 5.294 -9.175 1 45.74 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 -27.754 5.354 -8.054 1 41.59 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 -27.736 6.676 -7.462 1 33.48 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 -27.196 7.843 -7.93 1 34.98 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 -27.421 8.881 -7.155 1 35.7 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 -28.186 8.357 -6.12 1 36.65 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 -28.759 8.937 -4.972 1 38.36 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 -28.831 10.261 -4.755 1 38.27 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 -29.312 8.105 -4.067 1 39 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 -29.378 6.802 -4.349 1 36.02 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 -28.979 6.161 -5.45 1 37.83 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 -28.366 6.998 -6.287 1 32.95 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 -23.927 1.762 -12.246 1 45.09 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 -22.864 0.759 -11.629 1 36.82 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 -21.638 0.816 -12.456 1 42.32 -1 O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 -23.438 -0.593 -11.445 1 31.57 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 -22.523 1.537 -10.261 1 38.45 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 -22.659 0.892 -8.951 1 38.52 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 -21.491 1.103 -8.006 1 35.22 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 -20.345 0.379 -8.519 1 36.45 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 -20.988 2.524 -7.851 1 31.26 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 -20.521 2.834 -6.546 1 35.77 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 -19.897 2.596 -8.924 1 32.76 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 -19.016 3.673 -8.668 1 30.78 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 -19.268 1.317 -8.602 1 35.14 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 -18.318 0.708 -9.6 1 38.38 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 -18.632 0.574 -10.961 1 34.06 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 -17.75 -0.082 -11.807 1 33.99 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 -18.028 -0.331 -13.249 1 36.76 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 -17.069 -0.584 -14.031 1 32.9 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 -19.319 -0.328 -13.664 1 34.96 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 -16.543 -0.56 -11.286 1 33.36 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 -16.261 -0.426 -9.942 1 31.47 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 -17.165 0.205 -9.11 1 34.71 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #