data_5UGV # _model_server_result.job_id yzGRtYtaZ3udMvteCFUuDw _model_server_result.datetime_utc '2024-12-21 11:51:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ugv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5UGV # _exptl.entry_id 5UGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UGV _cell.length_a 85.507 _cell.length_b 88.566 _cell.length_c 77.629 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 85.507 88.566 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 224 n n PA O2A NAD sing 225 n n PA O5B NAD sing 226 n n PA O3 NAD sing 227 n n O2A HOA2 NAD sing 228 n n O5B C5B NAD sing 229 n n C5B C4B NAD sing 230 n n C5B H51A NAD sing 231 n n C5B H52A NAD sing 232 n n C4B O4B NAD sing 233 n n C4B C3B NAD sing 234 n n C4B H4B NAD sing 235 n n O4B C1B NAD sing 236 n n C3B O3B NAD sing 237 n n C3B C2B NAD sing 238 n n C3B H3B NAD sing 239 n n O3B HO3A NAD sing 240 n n C2B O2B NAD sing 241 n n C2B C1B NAD sing 242 n n C2B H2B NAD sing 243 n n O2B HO2A NAD sing 244 n n C1B N9A NAD sing 245 n n C1B H1B NAD sing 246 n n N9A C8A NAD sing 247 n y N9A C4A NAD sing 248 n y C8A N7A NAD doub 249 n y C8A H8A NAD sing 250 n n N7A C5A NAD sing 251 n y C5A C6A NAD sing 252 n y C5A C4A NAD doub 253 n y C6A N6A NAD sing 254 n n C6A N1A NAD doub 255 n y N6A H61A NAD sing 256 n n N6A H62A NAD sing 257 n n N1A C2A NAD sing 258 n y C2A N3A NAD doub 259 n y C2A H2A NAD sing 260 n n N3A C4A NAD sing 261 n y O3 PN NAD sing 262 n n PN O1N NAD doub 263 n n PN O2N NAD sing 264 n n PN O5D NAD sing 265 n n O5D C5D NAD sing 266 n n C5D C4D NAD sing 267 n n C5D H51N NAD sing 268 n n C5D H52N NAD sing 269 n n C4D O4D NAD sing 270 n n C4D C3D NAD sing 271 n n C4D H4D NAD sing 272 n n O4D C1D NAD sing 273 n n C3D O3D NAD sing 274 n n C3D C2D NAD sing 275 n n C3D H3D NAD sing 276 n n O3D HO3N NAD sing 277 n n C2D O2D NAD sing 278 n n C2D C1D NAD sing 279 n n C2D H2D NAD sing 280 n n O2D HO2N NAD sing 281 n n C1D N1N NAD sing 282 n n C1D H1D NAD sing 283 n n N1N C2N NAD sing 284 n y N1N C6N NAD doub 285 n y C2N C3N NAD doub 286 n y C2N H2N NAD sing 287 n n C3N C7N NAD sing 288 n n C3N C4N NAD sing 289 n y C7N O7N NAD doub 290 n n C7N N7N NAD sing 291 n n N7N H71N NAD sing 292 n n N7N H72N NAD sing 293 n n C4N C5N NAD doub 294 n y C4N H4N NAD sing 295 n n C5N C6N NAD sing 296 n y C5N H5N NAD sing 297 n n C6N H6N NAD sing 298 n n # _atom_sites.entry_id 5UGV _atom_sites.fract_transf_matrix[1][1] 0.011695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 2 NAD NAI . D 3 SO4 A 1 302 1 SO4 SO4 . E 4 PGE A 1 303 1 PGE PG4 . F 4 PGE A 1 304 2 PGE PG4 . G 2 NAD B 1 301 1 NAD NAI . H 5 HOH A 1 401 39 HOH HOH . H 5 HOH A 2 402 181 HOH HOH . H 5 HOH A 3 403 34 HOH HOH . H 5 HOH A 4 404 21 HOH HOH . H 5 HOH A 5 405 45 HOH HOH . H 5 HOH A 6 406 38 HOH HOH . H 5 HOH A 7 407 60 HOH HOH . H 5 HOH A 8 408 100 HOH HOH . H 5 HOH A 9 409 53 HOH HOH . H 5 HOH A 10 410 133 HOH HOH . H 5 HOH A 11 411 30 HOH HOH . H 5 HOH A 12 412 68 HOH HOH . H 5 HOH A 13 413 179 HOH HOH . H 5 HOH A 14 414 17 HOH HOH . H 5 HOH A 15 415 44 HOH HOH . H 5 HOH A 16 416 59 HOH HOH . H 5 HOH A 17 417 15 HOH HOH . H 5 HOH A 18 418 46 HOH HOH . H 5 HOH A 19 419 193 HOH HOH . H 5 HOH A 20 420 76 HOH HOH . H 5 HOH A 21 421 51 HOH HOH . H 5 HOH A 22 422 216 HOH HOH . H 5 HOH A 23 423 103 HOH HOH . H 5 HOH A 24 424 198 HOH HOH . H 5 HOH A 25 425 161 HOH HOH . H 5 HOH A 26 426 57 HOH HOH . H 5 HOH A 27 427 196 HOH HOH . H 5 HOH A 28 428 35 HOH HOH . H 5 HOH A 29 429 49 HOH HOH . H 5 HOH A 30 430 16 HOH HOH . H 5 HOH A 31 431 119 HOH HOH . H 5 HOH A 32 432 121 HOH HOH . H 5 HOH A 33 433 207 HOH HOH . H 5 HOH A 34 434 62 HOH HOH . H 5 HOH A 35 435 7 HOH HOH . H 5 HOH A 36 436 194 HOH HOH . H 5 HOH A 37 437 220 HOH HOH . H 5 HOH A 38 438 87 HOH HOH . H 5 HOH A 39 439 104 HOH HOH . H 5 HOH A 40 440 180 HOH HOH . H 5 HOH A 41 441 29 HOH HOH . H 5 HOH A 42 442 82 HOH HOH . H 5 HOH A 43 443 134 HOH HOH . H 5 HOH A 44 444 55 HOH HOH . H 5 HOH A 45 445 88 HOH HOH . H 5 HOH A 46 446 128 HOH HOH . H 5 HOH A 47 447 77 HOH HOH . I 5 HOH B 1 401 32 HOH HOH . I 5 HOH B 2 402 202 HOH HOH . I 5 HOH B 3 403 188 HOH HOH . I 5 HOH B 4 404 218 HOH HOH . I 5 HOH B 5 405 42 HOH HOH . I 5 HOH B 6 406 47 HOH HOH . I 5 HOH B 7 407 217 HOH HOH . I 5 HOH B 8 408 6 HOH HOH . I 5 HOH B 9 409 10 HOH HOH . I 5 HOH B 10 410 200 HOH HOH . I 5 HOH B 11 411 190 HOH HOH . I 5 HOH B 12 412 215 HOH HOH . I 5 HOH B 13 413 50 HOH HOH . I 5 HOH B 14 414 197 HOH HOH . I 5 HOH B 15 415 187 HOH HOH . I 5 HOH B 16 416 191 HOH HOH . I 5 HOH B 17 417 90 HOH HOH . I 5 HOH B 18 418 24 HOH HOH . I 5 HOH B 19 419 177 HOH HOH . I 5 HOH B 20 420 67 HOH HOH . I 5 HOH B 21 421 13 HOH HOH . I 5 HOH B 22 422 199 HOH HOH . I 5 HOH B 23 423 63 HOH HOH . I 5 HOH B 24 424 52 HOH HOH . I 5 HOH B 25 425 185 HOH HOH . I 5 HOH B 26 426 130 HOH HOH . I 5 HOH B 27 427 206 HOH HOH . I 5 HOH B 28 428 204 HOH HOH . I 5 HOH B 29 429 22 HOH HOH . I 5 HOH B 30 430 36 HOH HOH . I 5 HOH B 31 431 93 HOH HOH . I 5 HOH B 32 432 203 HOH HOH . I 5 HOH B 33 433 48 HOH HOH . I 5 HOH B 34 434 69 HOH HOH . I 5 HOH B 35 435 106 HOH HOH . I 5 HOH B 36 436 183 HOH HOH . I 5 HOH B 37 437 178 HOH HOH . I 5 HOH B 38 438 184 HOH HOH . I 5 HOH B 39 439 43 HOH HOH . I 5 HOH B 40 440 201 HOH HOH . I 5 HOH B 41 441 219 HOH HOH . I 5 HOH B 42 442 186 HOH HOH . I 5 HOH B 43 443 205 HOH HOH . I 5 HOH B 44 444 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 61.74 48.584 -0.045 0.65 80.54 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . C 2 63.007 47.776 -0.175 0.65 73.42 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . C 2 60.38 48.007 -0.378 0.65 72.88 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . C 2 61.911 49.87 -0.989 0.65 79.68 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . C 2 62.776 50.982 -0.735 0.65 78.18 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . C 2 62.937 51.71 -2.067 0.65 79.38 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . C 2 64.056 52.607 -2.097 0.65 78.97 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . C 2 63.137 50.727 -3.228 0.65 79.03 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . C 2 62.039 50.825 -4.147 0.65 77.8 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . C 2 64.456 51.128 -3.848 0.65 76.68 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . C 2 64.47 50.933 -5.265 0.65 75.74 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . C 2 64.538 52.591 -3.444 0.65 76.94 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . C 2 65.882 53.196 -3.624 0.65 74.21 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . C 2 67.093 52.612 -3.496 0.65 73.64 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . C 2 68.077 53.508 -3.773 0.65 74.8 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . C 2 67.496 54.685 -4.077 0.65 72.19 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . C 2 67.942 56.05 -4.461 0.65 69.84 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . C 2 69.251 56.344 -4.564 0.65 68.93 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . C 2 66.995 57 -4.688 0.65 77.47 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . C 2 65.663 56.739 -4.59 0.65 77.14 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . C 2 65.202 55.506 -4.249 0.65 75.37 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . C 2 66.045 54.467 -3.983 0.65 69.76 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . C 2 61.726 49.131 1.474 0.65 80.49 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . C 2 60.422 49.63 2.295 0.65 82.23 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . C 2 59.797 48.43 2.983 0.65 66.98 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . C 2 59.64 50.496 1.327 0.65 71.02 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . C 2 61.041 50.597 3.459 0.65 76.8 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . C 2 62.193 51.435 3.225 0.65 73.14 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . C 2 62.996 51.769 4.491 0.65 72.78 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . C 2 62.176 52.318 5.547 0.65 73.38 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . C 2 63.697 50.557 5.092 0.65 70.04 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . C 2 65.007 50.93 5.535 0.65 64.23 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . C 2 62.779 50.169 6.245 0.65 71.82 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . C 2 63.436 49.426 7.273 0.65 66.89 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . C 2 62.208 51.502 6.731 0.65 72.38 ? C1D NAD 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #