data_5UGV # _model_server_result.job_id dvpknoWKQsPz70wU144f-A _model_server_result.datetime_utc '2024-12-21 12:15:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ugv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5UGV # _exptl.entry_id 5UGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UGV _cell.length_a 85.507 _cell.length_b 88.566 _cell.length_c 77.629 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 85.507 88.566 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 224 n n PA O2A NAD sing 225 n n PA O5B NAD sing 226 n n PA O3 NAD sing 227 n n O2A HOA2 NAD sing 228 n n O5B C5B NAD sing 229 n n C5B C4B NAD sing 230 n n C5B H51A NAD sing 231 n n C5B H52A NAD sing 232 n n C4B O4B NAD sing 233 n n C4B C3B NAD sing 234 n n C4B H4B NAD sing 235 n n O4B C1B NAD sing 236 n n C3B O3B NAD sing 237 n n C3B C2B NAD sing 238 n n C3B H3B NAD sing 239 n n O3B HO3A NAD sing 240 n n C2B O2B NAD sing 241 n n C2B C1B NAD sing 242 n n C2B H2B NAD sing 243 n n O2B HO2A NAD sing 244 n n C1B N9A NAD sing 245 n n C1B H1B NAD sing 246 n n N9A C8A NAD sing 247 n y N9A C4A NAD sing 248 n y C8A N7A NAD doub 249 n y C8A H8A NAD sing 250 n n N7A C5A NAD sing 251 n y C5A C6A NAD sing 252 n y C5A C4A NAD doub 253 n y C6A N6A NAD sing 254 n n C6A N1A NAD doub 255 n y N6A H61A NAD sing 256 n n N6A H62A NAD sing 257 n n N1A C2A NAD sing 258 n y C2A N3A NAD doub 259 n y C2A H2A NAD sing 260 n n N3A C4A NAD sing 261 n y O3 PN NAD sing 262 n n PN O1N NAD doub 263 n n PN O2N NAD sing 264 n n PN O5D NAD sing 265 n n O5D C5D NAD sing 266 n n C5D C4D NAD sing 267 n n C5D H51N NAD sing 268 n n C5D H52N NAD sing 269 n n C4D O4D NAD sing 270 n n C4D C3D NAD sing 271 n n C4D H4D NAD sing 272 n n O4D C1D NAD sing 273 n n C3D O3D NAD sing 274 n n C3D C2D NAD sing 275 n n C3D H3D NAD sing 276 n n O3D HO3N NAD sing 277 n n C2D O2D NAD sing 278 n n C2D C1D NAD sing 279 n n C2D H2D NAD sing 280 n n O2D HO2N NAD sing 281 n n C1D N1N NAD sing 282 n n C1D H1D NAD sing 283 n n N1N C2N NAD sing 284 n y N1N C6N NAD doub 285 n y C2N C3N NAD doub 286 n y C2N H2N NAD sing 287 n n C3N C7N NAD sing 288 n n C3N C4N NAD sing 289 n y C7N O7N NAD doub 290 n n C7N N7N NAD sing 291 n n N7N H71N NAD sing 292 n n N7N H72N NAD sing 293 n n C4N C5N NAD doub 294 n y C4N H4N NAD sing 295 n n C5N C6N NAD sing 296 n y C5N H5N NAD sing 297 n n C6N H6N NAD sing 298 n n # _atom_sites.entry_id 5UGV _atom_sites.fract_transf_matrix[1][1] 0.011695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 2 NAD NAI . D 3 SO4 A 1 302 1 SO4 SO4 . E 4 PGE A 1 303 1 PGE PG4 . F 4 PGE A 1 304 2 PGE PG4 . G 2 NAD B 1 301 1 NAD NAI . H 5 HOH A 1 401 39 HOH HOH . H 5 HOH A 2 402 181 HOH HOH . H 5 HOH A 3 403 34 HOH HOH . H 5 HOH A 4 404 21 HOH HOH . H 5 HOH A 5 405 45 HOH HOH . H 5 HOH A 6 406 38 HOH HOH . H 5 HOH A 7 407 60 HOH HOH . H 5 HOH A 8 408 100 HOH HOH . H 5 HOH A 9 409 53 HOH HOH . H 5 HOH A 10 410 133 HOH HOH . H 5 HOH A 11 411 30 HOH HOH . H 5 HOH A 12 412 68 HOH HOH . H 5 HOH A 13 413 179 HOH HOH . H 5 HOH A 14 414 17 HOH HOH . H 5 HOH A 15 415 44 HOH HOH . H 5 HOH A 16 416 59 HOH HOH . H 5 HOH A 17 417 15 HOH HOH . H 5 HOH A 18 418 46 HOH HOH . H 5 HOH A 19 419 193 HOH HOH . H 5 HOH A 20 420 76 HOH HOH . H 5 HOH A 21 421 51 HOH HOH . H 5 HOH A 22 422 216 HOH HOH . H 5 HOH A 23 423 103 HOH HOH . H 5 HOH A 24 424 198 HOH HOH . H 5 HOH A 25 425 161 HOH HOH . H 5 HOH A 26 426 57 HOH HOH . H 5 HOH A 27 427 196 HOH HOH . H 5 HOH A 28 428 35 HOH HOH . H 5 HOH A 29 429 49 HOH HOH . H 5 HOH A 30 430 16 HOH HOH . H 5 HOH A 31 431 119 HOH HOH . H 5 HOH A 32 432 121 HOH HOH . H 5 HOH A 33 433 207 HOH HOH . H 5 HOH A 34 434 62 HOH HOH . H 5 HOH A 35 435 7 HOH HOH . H 5 HOH A 36 436 194 HOH HOH . H 5 HOH A 37 437 220 HOH HOH . H 5 HOH A 38 438 87 HOH HOH . H 5 HOH A 39 439 104 HOH HOH . H 5 HOH A 40 440 180 HOH HOH . H 5 HOH A 41 441 29 HOH HOH . H 5 HOH A 42 442 82 HOH HOH . H 5 HOH A 43 443 134 HOH HOH . H 5 HOH A 44 444 55 HOH HOH . H 5 HOH A 45 445 88 HOH HOH . H 5 HOH A 46 446 128 HOH HOH . H 5 HOH A 47 447 77 HOH HOH . I 5 HOH B 1 401 32 HOH HOH . I 5 HOH B 2 402 202 HOH HOH . I 5 HOH B 3 403 188 HOH HOH . I 5 HOH B 4 404 218 HOH HOH . I 5 HOH B 5 405 42 HOH HOH . I 5 HOH B 6 406 47 HOH HOH . I 5 HOH B 7 407 217 HOH HOH . I 5 HOH B 8 408 6 HOH HOH . I 5 HOH B 9 409 10 HOH HOH . I 5 HOH B 10 410 200 HOH HOH . I 5 HOH B 11 411 190 HOH HOH . I 5 HOH B 12 412 215 HOH HOH . I 5 HOH B 13 413 50 HOH HOH . I 5 HOH B 14 414 197 HOH HOH . I 5 HOH B 15 415 187 HOH HOH . I 5 HOH B 16 416 191 HOH HOH . I 5 HOH B 17 417 90 HOH HOH . I 5 HOH B 18 418 24 HOH HOH . I 5 HOH B 19 419 177 HOH HOH . I 5 HOH B 20 420 67 HOH HOH . I 5 HOH B 21 421 13 HOH HOH . I 5 HOH B 22 422 199 HOH HOH . I 5 HOH B 23 423 63 HOH HOH . I 5 HOH B 24 424 52 HOH HOH . I 5 HOH B 25 425 185 HOH HOH . I 5 HOH B 26 426 130 HOH HOH . I 5 HOH B 27 427 206 HOH HOH . I 5 HOH B 28 428 204 HOH HOH . I 5 HOH B 29 429 22 HOH HOH . I 5 HOH B 30 430 36 HOH HOH . I 5 HOH B 31 431 93 HOH HOH . I 5 HOH B 32 432 203 HOH HOH . I 5 HOH B 33 433 48 HOH HOH . I 5 HOH B 34 434 69 HOH HOH . I 5 HOH B 35 435 106 HOH HOH . I 5 HOH B 36 436 183 HOH HOH . I 5 HOH B 37 437 178 HOH HOH . I 5 HOH B 38 438 184 HOH HOH . I 5 HOH B 39 439 43 HOH HOH . I 5 HOH B 40 440 201 HOH HOH . I 5 HOH B 41 441 219 HOH HOH . I 5 HOH B 42 442 186 HOH HOH . I 5 HOH B 43 443 205 HOH HOH . I 5 HOH B 44 444 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 2 36.676 62.646 57.418 1 67.95 ? PA NAD 301 B 1 HETATM 2 O O1A NAD . . . G 2 35.438 63.435 57.804 1 60.16 ? O1A NAD 301 B 1 HETATM 3 O O2A NAD . . . G 2 36.84 61.171 57.719 1 69.39 ? O2A NAD 301 B 1 HETATM 4 O O5B NAD . . . G 2 37.925 63.409 58.092 1 64.82 ? O5B NAD 301 B 1 HETATM 5 C C5B NAD . . . G 2 37.97 64.824 58.196 1 58.7 ? C5B NAD 301 B 1 HETATM 6 C C4B NAD . . . G 2 38.658 65.107 59.508 1 60.78 ? C4B NAD 301 B 1 HETATM 7 O O4B NAD . . . G 2 39.014 66.49 59.525 1 58.2 ? O4B NAD 301 B 1 HETATM 8 C C3B NAD . . . G 2 37.763 64.826 60.727 1 61.91 ? C3B NAD 301 B 1 HETATM 9 O O3B NAD . . . G 2 38.447 63.977 61.645 1 59.42 ? O3B NAD 301 B 1 HETATM 10 C C2B NAD . . . G 2 37.527 66.2 61.328 1 62.14 ? C2B NAD 301 B 1 HETATM 11 O O2B NAD . . . G 2 37.411 66.191 62.747 1 67.89 ? O2B NAD 301 B 1 HETATM 12 C C1B NAD . . . G 2 38.784 66.939 60.853 1 59.31 ? C1B NAD 301 B 1 HETATM 13 N N9A NAD . . . G 2 38.702 68.389 60.913 1 55.91 ? N9A NAD 301 B 1 HETATM 14 C C8A NAD . . . G 2 37.63 69.132 60.63 1 58.88 ? C8A NAD 301 B 1 HETATM 15 N N7A NAD . . . G 2 37.892 70.442 60.812 1 54.24 ? N7A NAD 301 B 1 HETATM 16 C C5A NAD . . . G 2 39.157 70.537 61.199 1 56.42 ? C5A NAD 301 B 1 HETATM 17 C C6A NAD . . . G 2 40.067 71.639 61.53 1 60.64 ? C6A NAD 301 B 1 HETATM 18 N N6A NAD . . . G 2 39.621 72.903 61.475 1 62.36 ? N6A NAD 301 B 1 HETATM 19 N N1A NAD . . . G 2 41.332 71.337 61.898 1 62.9 ? N1A NAD 301 B 1 HETATM 20 C C2A NAD . . . G 2 41.765 70.061 61.964 1 61.37 ? C2A NAD 301 B 1 HETATM 21 N N3A NAD . . . G 2 40.981 69.003 61.662 1 60.17 ? N3A NAD 301 B 1 HETATM 22 C C4A NAD . . . G 2 39.69 69.181 61.285 1 58.3 ? C4A NAD 301 B 1 HETATM 23 O O3 NAD . . . G 2 36.886 62.883 55.836 1 67.82 ? O3 NAD 301 B 1 HETATM 24 P PN NAD . . . G 2 37.887 62.043 54.884 1 71.97 ? PN NAD 301 B 1 HETATM 25 O O1N NAD . . . G 2 37.155 60.857 54.273 1 80.39 ? O1N NAD 301 B 1 HETATM 26 O O2N NAD . . . G 2 39.194 61.73 55.602 1 69.75 ? O2N NAD 301 B 1 HETATM 27 O O5D NAD . . . G 2 38.091 63.117 53.7 1 72.41 ? O5D NAD 301 B 1 HETATM 28 C C5D NAD . . . G 2 38.609 64.432 53.944 1 72.77 ? C5D NAD 301 B 1 HETATM 29 C C4D NAD . . . G 2 38.443 65.375 52.749 1 77.17 ? C4D NAD 301 B 1 HETATM 30 O O4D NAD . . . G 2 39.298 65.009 51.664 1 71.53 ? O4D NAD 301 B 1 HETATM 31 C C3D NAD . . . G 2 37.04 65.405 52.148 1 79.9 ? C3D NAD 301 B 1 HETATM 32 O O3D NAD . . . G 2 36.702 66.771 51.869 1 75.49 ? O3D NAD 301 B 1 HETATM 33 C C2D NAD . . . G 2 37.114 64.58 50.865 1 80.7 ? C2D NAD 301 B 1 HETATM 34 O O2D NAD . . . G 2 36.198 65.023 49.849 1 68.47 ? O2D NAD 301 B 1 HETATM 35 C C1D NAD . . . G 2 38.578 64.745 50.451 1 77.12 ? C1D NAD 301 B 1 HETATM 36 N N1N NAD . . . G 2 39.201 63.603 49.731 1 82.24 ? N1N NAD 301 B 1 HETATM 37 C C2N NAD . . . G 2 40.065 63.918 48.752 1 80.73 ? C2N NAD 301 B 1 HETATM 38 C C3N NAD . . . G 2 40.746 62.968 47.983 1 82.62 ? C3N NAD 301 B 1 HETATM 39 C C7N NAD . . . G 2 41.732 63.427 46.928 1 83.73 ? C7N NAD 301 B 1 HETATM 40 O O7N NAD . . . G 2 42.454 62.56 46.411 1 86.29 ? O7N NAD 301 B 1 HETATM 41 N N7N NAD . . . G 2 41.871 64.738 46.607 1 71.58 ? N7N NAD 301 B 1 HETATM 42 C C4N NAD . . . G 2 40.546 61.482 48.246 1 78.91 ? C4N NAD 301 B 1 HETATM 43 C C5N NAD . . . G 2 39.588 61.247 49.33 1 80.62 ? C5N NAD 301 B 1 HETATM 44 C C6N NAD . . . G 2 38.966 62.298 50.026 1 83.72 ? C6N NAD 301 B 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1297 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 44 #