data_5UHE # _model_server_result.job_id hbXbo28bRdcCeihbyqN9eA _model_server_result.datetime_utc '2024-11-28 05:00:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uhe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1404}' # _entry.id 5UHE # _exptl.entry_id 5UHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.433 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Nalpha-(benzenecarbonyl)-N-(2-methylphenyl)-D-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UHE _cell.length_a 151.531 _cell.length_b 162.155 _cell.length_c 195.681 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 62 D CYS 62 1_555 D SG CYS 78 D CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? disulf ? disulf2 D SG CYS 975 D CYS 975 1_555 D SG CYS 978 D CYS 978 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc1 D SG CYS 60 D CYS 60 1_555 J ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 D SG CYS 62 D CYS 62 1_555 J ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 D SG CYS 75 D CYS 75 1_555 J ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 D SG CYS 78 D CYS 78 1_555 J ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 D OD1 ASP 535 D ASP 535 1_555 K MG MG . D MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc6 D OD1 ASP 537 D ASP 537 1_555 K MG MG . D MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 D OD1 ASP 539 D ASP 539 1_555 K MG MG . D MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc8 D SG CYS 891 D CYS 891 1_555 I ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc9 D SG CYS 968 D CYS 968 1_555 I ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc10 D SG CYS 975 D CYS 975 1_555 I ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc11 D SG CYS 978 D CYS 978 1_555 I ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? hydrog WATSON-CRICK hydrog1 G N3 DT 15 H DT 15 1_555 H N1 DA 9 G DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 G O4 DT 15 H DT 15 1_555 H N6 DA 9 G DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 G N3 DC 16 H DC 16 1_555 H N1 DG 8 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 G N4 DC 16 H DC 16 1_555 H O6 DG 8 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 G O2 DC 16 H DC 16 1_555 H N2 DG 8 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 G N1 DA 17 H DA 17 1_555 H N3 DT 7 G DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 G N6 DA 17 H DA 17 1_555 H O4 DT 7 G DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 G N3 DC 18 H DC 18 1_555 H N1 DG 6 G DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 G N4 DC 18 H DC 18 1_555 H O6 DG 6 G DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 G O2 DC 18 H DC 18 1_555 H N2 DG 6 G DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 G N1 DG 19 H DG 19 1_555 H N3 DC 5 G DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 G N2 DG 19 H DG 19 1_555 H O2 DC 5 G DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 G O6 DG 19 H DG 19 1_555 H N4 DC 5 G DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 G N1 DG 20 H DG 20 1_555 H N3 DC 4 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 G N2 DG 20 H DG 20 1_555 H O2 DC 4 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 G O6 DG 20 H DG 20 1_555 H N4 DC 4 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 G N1 DA 21 H DA 21 1_555 H N3 DT 3 G DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 G N6 DA 21 H DA 21 1_555 H O4 DT 3 G DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 G N3 DT 22 H DT 22 1_555 H N1 DA 2 G DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 G O4 DT 22 H DT 22 1_555 H N6 DA 2 G DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 G N1 DG 23 H DG 23 1_555 H N3 DC 1 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 G N2 DG 23 H DG 23 1_555 H O2 DC 1 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 G O6 DG 23 H DG 23 1_555 H N4 DC 1 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C23 H22 N2 O2' _chem_comp.formula_weight 358.433 _chem_comp.id 88G _chem_comp.mon_nstd_flag . _chem_comp.name Nalpha-(benzenecarbonyl)-N-(2-methylphenyl)-D-phenylalaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAE CAH 88G doub 1 n y CAE CAI 88G sing 2 n y CAH CAO 88G sing 3 n y CAI CAP 88G doub 4 n y CAO CAY 88G doub 5 n y CAP CAY 88G sing 6 n y CAY CAU 88G sing 7 n n CAU N 88G sing 8 n n CAU OAB 88G doub 9 n n N CA 88G sing 10 n n O C 88G doub 11 n n CA CB 88G sing 12 n n CA C 88G sing 13 n n CB CG 88G sing 14 n n C NAS 88G sing 15 n n CAA CAW 88G sing 16 n n CAW CAL 88G doub 17 n y CAW CAZ 88G sing 18 n y NAS CAZ 88G sing 19 n n CG CD1 88G doub 20 n y CG CD2 88G sing 21 n y CAL CAJ 88G sing 22 n y CAZ CAQ 88G doub 23 n y CD1 CE1 88G sing 24 n y CAJ CAK 88G doub 25 n y CAQ CAK 88G sing 26 n y CD2 CE2 88G doub 27 n y CE1 CZ 88G doub 28 n y CE2 CZ 88G sing 29 n y CAA H1 88G sing 30 n n CAA H2 88G sing 31 n n CAA H3 88G sing 32 n n CAL H4 88G sing 33 n n CAJ H5 88G sing 34 n n CAK H6 88G sing 35 n n CAQ H7 88G sing 36 n n NAS H8 88G sing 37 n n CA H9 88G sing 38 n n CB H10 88G sing 39 n n CB H11 88G sing 40 n n CD1 H12 88G sing 41 n n CE1 H13 88G sing 42 n n CZ H14 88G sing 43 n n CE2 H15 88G sing 44 n n CD2 H16 88G sing 45 n n N H17 88G sing 46 n n CAO H18 88G sing 47 n n CAH H19 88G sing 48 n n CAE H20 88G sing 49 n n CAI H21 88G sing 50 n n CAP H22 88G sing 51 n n # _atom_sites.entry_id 5UHE _atom_sites.fract_transf_matrix[1][1] 0.006599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 8 ZN D 1 1401 2002 ZN ZN . J 8 ZN D 1 1402 2003 ZN ZN . K 9 MG D 1 1403 2004 MG MG . L 10 88G D 1 1404 2005 88G DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 88G . . . L 10 -31.328 -21.542 16.488 1 70.1 ? CAA 88G 1404 D 1 HETATM 2 C CAW 88G . . . L 10 -30.558 -20.385 16.556 1 60.95 ? CAW 88G 1404 D 1 HETATM 3 C CAL 88G . . . L 10 -29.232 -20.488 16.953 1 56.4 ? CAL 88G 1404 D 1 HETATM 4 C CAJ 88G . . . L 10 -28.464 -19.35 17.012 1 50.28 ? CAJ 88G 1404 D 1 HETATM 5 C CAK 88G . . . L 10 -29.041 -18.117 16.678 1 54.51 ? CAK 88G 1404 D 1 HETATM 6 C CAQ 88G . . . L 10 -30.382 -18.008 16.289 1 57.72 ? CAQ 88G 1404 D 1 HETATM 7 C CAZ 88G . . . L 10 -31.14 -19.163 16.216 1 61.48 ? CAZ 88G 1404 D 1 HETATM 8 N NAS 88G . . . L 10 -32.446 -19.194 15.843 1 62.55 ? NAS 88G 1404 D 1 HETATM 9 C C 88G . . . L 10 -32.898 -18.431 14.792 1 59.37 ? C 88G 1404 D 1 HETATM 10 O O 88G . . . L 10 -32.194 -17.683 14.113 1 57.55 ? O 88G 1404 D 1 HETATM 11 C CA 88G . . . L 10 -34.403 -18.599 14.435 1 62.27 ? CA 88G 1404 D 1 HETATM 12 C CB 88G . . . L 10 -35.242 -17.353 14.846 1 62.45 ? CB 88G 1404 D 1 HETATM 13 C CG 88G . . . L 10 -35.086 -17.067 16.215 1 60.01 ? CG 88G 1404 D 1 HETATM 14 C CD1 88G . . . L 10 -34.347 -15.952 16.633 1 55.18 ? CD1 88G 1404 D 1 HETATM 15 C CE1 88G . . . L 10 -34.207 -15.713 18.004 1 54.26 ? CE1 88G 1404 D 1 HETATM 16 C CZ 88G . . . L 10 -34.796 -16.555 18.951 1 51.31 ? CZ 88G 1404 D 1 HETATM 17 C CE2 88G . . . L 10 -35.532 -17.657 18.524 1 58.25 ? CE2 88G 1404 D 1 HETATM 18 C CD2 88G . . . L 10 -35.677 -17.91 17.161 1 61.78 ? CD2 88G 1404 D 1 HETATM 19 N N 88G . . . L 10 -34.603 -18.92 12.99 1 64.21 ? N 88G 1404 D 1 HETATM 20 C CAU 88G . . . L 10 -34.756 -20.207 12.549 1 71.16 ? CAU 88G 1404 D 1 HETATM 21 O OAB 88G . . . L 10 -34.748 -21.168 13.318 1 80.89 ? OAB 88G 1404 D 1 HETATM 22 C CAY 88G . . . L 10 -34.966 -20.41 11.17 1 66.78 ? CAY 88G 1404 D 1 HETATM 23 C CAO 88G . . . L 10 -35.561 -19.399 10.417 1 63.91 ? CAO 88G 1404 D 1 HETATM 24 C CAH 88G . . . L 10 -35.791 -19.6 9.051 1 60.36 ? CAH 88G 1404 D 1 HETATM 25 C CAE 88G . . . L 10 -35.439 -20.789 8.411 1 57.62 ? CAE 88G 1404 D 1 HETATM 26 C CAI 88G . . . L 10 -34.851 -21.807 9.161 1 61.04 ? CAI 88G 1404 D 1 HETATM 27 C CAP 88G . . . L 10 -34.621 -21.621 10.533 1 65.57 ? CAP 88G 1404 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #