data_5UHF # _model_server_result.job_id 6mHLfqaAhyxv4EArhPjvOA _model_server_result.datetime_utc '2024-11-24 12:06:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1404}' # _entry.id 5UHF # _exptl.entry_id 5UHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.356 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-methylphenyl)-Nalpha-(selenophene-2-carbonyl)-D-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UHF _cell.length_a 152.374 _cell.length_b 163.46 _cell.length_c 197.384 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 975 D CYS 975 1_555 D SG CYS 978 D CYS 978 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc1 D SG CYS 60 D CYS 60 1_555 J ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 D SG CYS 62 D CYS 62 1_555 J ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 D SG CYS 75 D CYS 75 1_555 J ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 D SG CYS 78 D CYS 78 1_555 J ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 D OD1 ASP 535 D ASP 535 1_555 K MG MG . D MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc6 D OD1 ASP 537 D ASP 537 1_555 K MG MG . D MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc7 D OD2 ASP 537 D ASP 537 1_555 K MG MG . D MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc8 D OD1 ASP 539 D ASP 539 1_555 K MG MG . D MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc9 D SG CYS 891 D CYS 891 1_555 I ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc10 D SG CYS 968 D CYS 968 1_555 I ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc11 D SG CYS 975 D CYS 975 1_555 I ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc12 D SG CYS 978 D CYS 978 1_555 I ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? hydrog WATSON-CRICK hydrog1 G N3 DT 15 H DT 15 1_555 H N1 DA 9 G DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 G O4 DT 15 H DT 15 1_555 H N6 DA 9 G DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog3 G N3 DC 16 H DC 16 1_555 H N2 DG 8 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog4 G O2 DC 16 H DC 16 1_555 H N1 DG 8 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 G N1 DA 17 H DA 17 1_555 H N3 DT 7 G DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 G N6 DA 17 H DA 17 1_555 H O4 DT 7 G DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 G N3 DC 18 H DC 18 1_555 H N1 DG 6 G DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 G N4 DC 18 H DC 18 1_555 H O6 DG 6 G DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 G O2 DC 18 H DC 18 1_555 H N2 DG 6 G DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 G N1 DG 19 H DG 19 1_555 H N3 DC 5 G DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 G N2 DG 19 H DG 19 1_555 H O2 DC 5 G DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 G O6 DG 19 H DG 19 1_555 H N4 DC 5 G DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 G N1 DG 20 H DG 20 1_555 H N3 DC 4 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 G N2 DG 20 H DG 20 1_555 H O2 DC 4 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 G O6 DG 20 H DG 20 1_555 H N4 DC 4 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 G N1 DA 21 H DA 21 1_555 H N3 DT 3 G DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 G N6 DA 21 H DA 21 1_555 H O4 DT 3 G DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 G N3 DT 22 H DT 22 1_555 H N1 DA 2 G DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 G O4 DT 22 H DT 22 1_555 H N6 DA 2 G DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 G N1 DG 23 H DG 23 1_555 H N3 DC 1 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 G N2 DG 23 H DG 23 1_555 H O2 DC 1 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 G O6 DG 23 H DG 23 1_555 H N4 DC 1 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C21 H20 N2 O2 Se' _chem_comp.formula_weight 411.356 _chem_comp.id 88D _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-methylphenyl)-Nalpha-(selenophene-2-carbonyl)-D-phenylalaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ CAI 88D doub 1 n y CAJ SE 88D sing 2 n y CAI CAO 88D sing 3 n y SE CAY 88D sing 4 n y CAO CAY 88D doub 5 n y CAY CAT 88D sing 6 n n CAT N 88D sing 7 n n CAT OAB 88D doub 8 n n N CA 88D sing 9 n n O C 88D doub 10 n n CA CB 88D sing 11 n n CA C 88D sing 12 n n CB CG 88D sing 13 n n C NAQ 88D sing 14 n n NAQ CAX 88D sing 15 n n CG CD1 88D doub 16 n y CG CD2 88D sing 17 n y CAA CAW 88D sing 18 n n CAX CAW 88D doub 19 n y CAX CAN 88D sing 20 n y CAW CAM 88D sing 21 n y CD1 CE1 88D sing 22 n y CAN CAH 88D doub 23 n y CAM CAG 88D doub 24 n y CD2 CE2 88D doub 25 n y CAH CAG 88D sing 26 n y CE1 CZ 88D doub 27 n y CE2 CZ 88D sing 28 n y CAA H1 88D sing 29 n n CAA H2 88D sing 30 n n CAA H3 88D sing 31 n n CAM H4 88D sing 32 n n CAG H5 88D sing 33 n n CAH H6 88D sing 34 n n CAN H7 88D sing 35 n n NAQ H8 88D sing 36 n n CA H9 88D sing 37 n n CB H10 88D sing 38 n n CB H11 88D sing 39 n n CD1 H12 88D sing 40 n n CE1 H13 88D sing 41 n n CZ H14 88D sing 42 n n CE2 H15 88D sing 43 n n CD2 H16 88D sing 44 n n N H17 88D sing 45 n n CAJ H18 88D sing 46 n n CAI H19 88D sing 47 n n CAO H20 88D sing 48 n n # _atom_sites.entry_id 5UHF _atom_sites.fract_transf_matrix[1][1] 0.006563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 8 ZN D 1 1401 2002 ZN ZN . J 8 ZN D 1 1402 2003 ZN ZN . K 9 MG D 1 1403 2004 MG MG . L 10 88D D 1 1404 2005 88D DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 88D . . . L 10 32.238 -20.579 -16.423 1 66.73 ? CAA 88D 1404 D 1 HETATM 2 C CAW 88D . . . L 10 31.375 -19.497 -16.535 1 58.97 ? CAW 88D 1404 D 1 HETATM 3 C CAM 88D . . . L 10 30.05 -19.703 -16.897 1 50.76 ? CAM 88D 1404 D 1 HETATM 4 C CAG 88D . . . L 10 29.173 -18.633 -17.012 1 46.87 ? CAG 88D 1404 D 1 HETATM 5 C CAH 88D . . . L 10 29.623 -17.343 -16.765 1 49.7 ? CAH 88D 1404 D 1 HETATM 6 C CAN 88D . . . L 10 30.947 -17.124 -16.404 1 53.14 ? CAN 88D 1404 D 1 HETATM 7 C CAX 88D . . . L 10 31.816 -18.203 -16.282 1 58.19 ? CAX 88D 1404 D 1 HETATM 8 N NAQ 88D . . . L 10 33.103 -18.06 -15.943 1 62.95 ? NAQ 88D 1404 D 1 HETATM 9 C C 88D . . . L 10 33.425 -17.412 -14.8 1 64.14 ? C 88D 1404 D 1 HETATM 10 O O 88D . . . L 10 32.612 -16.956 -13.998 1 59.94 ? O 88D 1404 D 1 HETATM 11 C CA 88D . . . L 10 34.938 -17.293 -14.524 1 70.52 ? CA 88D 1404 D 1 HETATM 12 C CB 88D . . . L 10 35.464 -15.904 -14.923 1 63.88 ? CB 88D 1404 D 1 HETATM 13 C CG 88D . . . L 10 35.474 -15.785 -16.314 1 66.7 ? CG 88D 1404 D 1 HETATM 14 C CD1 88D . . . L 10 34.552 -14.955 -16.951 1 62.49 ? CD1 88D 1404 D 1 HETATM 15 C CE1 88D . . . L 10 34.563 -14.835 -18.338 1 60.94 ? CE1 88D 1404 D 1 HETATM 16 C CZ 88D . . . L 10 35.494 -15.538 -19.095 1 62.35 ? CZ 88D 1404 D 1 HETATM 17 C CE2 88D . . . L 10 36.417 -16.361 -18.459 1 70.77 ? CE2 88D 1404 D 1 HETATM 18 C CD2 88D . . . L 10 36.41 -16.485 -17.072 1 70.34 ? CD2 88D 1404 D 1 HETATM 19 N N 88D . . . L 10 35.246 -17.549 -13.104 1 77.59 ? N 88D 1404 D 1 HETATM 20 C CAT 88D . . . L 10 34.961 -18.721 -12.497 1 88.23 ? CAT 88D 1404 D 1 HETATM 21 O OAB 88D . . . L 10 34.421 -19.689 -13.037 1 86.79 ? OAB 88D 1404 D 1 HETATM 22 C CAY 88D . . . L 10 35.348 -18.779 -11.224 1 136.79 ? CAY 88D 1404 D 1 HETATM 23 SE SE 88D . . . L 10 34.853 -20.087 -9.902 1 144.89 ? SE 88D 1404 D 1 HETATM 24 C CAJ 88D . . . L 10 35.98 -19.134 -8.655 1 136.79 ? CAJ 88D 1404 D 1 HETATM 25 C CAI 88D . . . L 10 36.513 -18.096 -9.334 1 87.84 ? CAI 88D 1404 D 1 HETATM 26 C CAO 88D . . . L 10 36.191 -17.91 -10.644 1 88.01 ? CAO 88D 1404 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #