data_5UHP
#
_model_server_result.job_id            yho04xwIVqVuhV60jTSB-w 
_model_server_result.datetime_utc      '2024-12-26 18:39:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5uhp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    5UHP 
#
_exptl.entry_id    5UHP 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         77.27 
_cell.angle_beta          62.81 
_cell.angle_gamma         63.03 
_cell.entry_id            5UHP 
_cell.length_a            89.722 
_cell.length_b            91.531 
_cell.length_c            94.517 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5UHP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,I,J,M,N,R 1 1 
C,D,E,H,K,L,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5UHP 
_atom_sites.fract_transf_matrix[1][1]    0.011146 
_atom_sites.fract_transf_matrix[1][2]    -0.005672 
_atom_sites.fract_transf_matrix[1][3]    -0.005632 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012258 
_atom_sites.fract_transf_matrix[2][3]    -0.000203 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GOL A 1 501 2 GOL GOL . 
J 3 GOL B 1 501 3 GOL GOL . 
K 3 GOL C 1 501 1 GOL GOL . 
L 3 GOL D 1 501 4 GOL GOL . 
M 4 HOH A 1 601 34 HOH HOH . 
M 4 HOH A 2 602 65 HOH HOH . 
M 4 HOH A 3 603 46 HOH HOH . 
M 4 HOH A 4 604 48 HOH HOH . 
M 4 HOH A 5 605 13 HOH HOH . 
N 4 HOH B 1 601 58 HOH HOH . 
N 4 HOH B 2 602 54 HOH HOH . 
N 4 HOH B 3 603 56 HOH HOH . 
N 4 HOH B 4 604 37 HOH HOH . 
N 4 HOH B 5 605 6 HOH HOH . 
N 4 HOH B 6 606 25 HOH HOH . 
N 4 HOH B 7 607 2 HOH HOH . 
N 4 HOH B 8 608 21 HOH HOH . 
N 4 HOH B 9 609 66 HOH HOH . 
N 4 HOH B 10 610 38 HOH HOH . 
N 4 HOH B 11 611 44 HOH HOH . 
O 4 HOH C 1 601 59 HOH HOH . 
O 4 HOH C 2 602 62 HOH HOH . 
O 4 HOH C 3 603 22 HOH HOH . 
O 4 HOH C 4 604 63 HOH HOH . 
O 4 HOH C 5 605 64 HOH HOH . 
O 4 HOH C 6 606 41 HOH HOH . 
O 4 HOH C 7 607 50 HOH HOH . 
O 4 HOH C 8 608 17 HOH HOH . 
P 4 HOH D 1 601 4 HOH HOH . 
P 4 HOH D 2 602 8 HOH HOH . 
P 4 HOH D 3 603 67 HOH HOH . 
Q 4 HOH E 1 801 55 HOH HOH . 
Q 4 HOH E 2 802 60 HOH HOH . 
Q 4 HOH E 3 803 16 HOH HOH . 
R 4 HOH F 1 801 1 HOH HOH . 
R 4 HOH F 2 802 15 HOH HOH . 
R 4 HOH F 3 803 28 HOH HOH . 
S 4 HOH H 1 801 57 HOH HOH . 
S 4 HOH H 2 802 53 HOH HOH . 
S 4 HOH H 3 803 19 HOH HOH . 
S 4 HOH H 4 804 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 3 -22.358 -32.965 27.833 1 60.36 ? C1 GOL 501 B 1 
HETATM 2 O O1 GOL . . . J 3 -21.934 -34.311 27.606 1 60.55 ? O1 GOL 501 B 1 
HETATM 3 C C2 GOL . . . J 3 -21.908 -32.045 26.719 1 60.88 ? C2 GOL 501 B 1 
HETATM 4 O O2 GOL . . . J 3 -22.467 -30.735 26.891 1 58.63 ? O2 GOL 501 B 1 
HETATM 5 C C3 GOL . . . J 3 -20.406 -31.943 26.583 1 62.69 ? C3 GOL 501 B 1 
HETATM 6 O O3 GOL . . . J 3 -19.85 -31.202 27.657 1 63.21 ? O3 GOL 501 B 1 
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_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#