data_5UHV # _model_server_result.job_id JwIjQ-QhbSSu4jpjN_Nrxw _model_server_result.datetime_utc '2024-10-19 03:53:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5UHV # _exptl.entry_id 5UHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UHV _cell.length_a 39.007 _cell.length_b 39.007 _cell.length_c 159.175 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 5UHV _atom_sites.fract_transf_matrix[1][1] 0.025636 _atom_sites.fract_transf_matrix[1][2] 0.014801 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 167 GNP GNP . C 3 MG A 1 202 1 MG MG . D 4 GOL A 1 203 1 GOL GOL . E 5 HOH A 1 301 13 HOH HOH . E 5 HOH A 2 302 94 HOH HOH . E 5 HOH A 3 303 113 HOH HOH . E 5 HOH A 4 304 163 HOH HOH . E 5 HOH A 5 305 21 HOH HOH . E 5 HOH A 6 306 137 HOH HOH . E 5 HOH A 7 307 114 HOH HOH . E 5 HOH A 8 308 160 HOH HOH . E 5 HOH A 9 309 123 HOH HOH . E 5 HOH A 10 310 77 HOH HOH . E 5 HOH A 11 311 95 HOH HOH . E 5 HOH A 12 312 90 HOH HOH . E 5 HOH A 13 313 166 HOH HOH . E 5 HOH A 14 314 10 HOH HOH . E 5 HOH A 15 315 59 HOH HOH . E 5 HOH A 16 316 47 HOH HOH . E 5 HOH A 17 317 88 HOH HOH . E 5 HOH A 18 318 107 HOH HOH . E 5 HOH A 19 319 80 HOH HOH . E 5 HOH A 20 320 6 HOH HOH . E 5 HOH A 21 321 105 HOH HOH . E 5 HOH A 22 322 152 HOH HOH . E 5 HOH A 23 323 40 HOH HOH . E 5 HOH A 24 324 17 HOH HOH . E 5 HOH A 25 325 175 HOH HOH . E 5 HOH A 26 326 24 HOH HOH . E 5 HOH A 27 327 2 HOH HOH . E 5 HOH A 28 328 83 HOH HOH . E 5 HOH A 29 329 68 HOH HOH . E 5 HOH A 30 330 22 HOH HOH . E 5 HOH A 31 331 82 HOH HOH . E 5 HOH A 32 332 128 HOH HOH . E 5 HOH A 33 333 168 HOH HOH . E 5 HOH A 34 334 19 HOH HOH . E 5 HOH A 35 335 126 HOH HOH . E 5 HOH A 36 336 31 HOH HOH . E 5 HOH A 37 337 148 HOH HOH . E 5 HOH A 38 338 29 HOH HOH . E 5 HOH A 39 339 42 HOH HOH . E 5 HOH A 40 340 89 HOH HOH . E 5 HOH A 41 341 65 HOH HOH . E 5 HOH A 42 342 20 HOH HOH . E 5 HOH A 43 343 32 HOH HOH . E 5 HOH A 44 344 124 HOH HOH . E 5 HOH A 45 345 18 HOH HOH . E 5 HOH A 46 346 35 HOH HOH . E 5 HOH A 47 347 119 HOH HOH . E 5 HOH A 48 348 71 HOH HOH . E 5 HOH A 49 349 53 HOH HOH . E 5 HOH A 50 350 97 HOH HOH . E 5 HOH A 51 351 153 HOH HOH . E 5 HOH A 52 352 3 HOH HOH . E 5 HOH A 53 353 16 HOH HOH . E 5 HOH A 54 354 108 HOH HOH . E 5 HOH A 55 355 56 HOH HOH . E 5 HOH A 56 356 36 HOH HOH . E 5 HOH A 57 357 103 HOH HOH . E 5 HOH A 58 358 11 HOH HOH . E 5 HOH A 59 359 33 HOH HOH . E 5 HOH A 60 360 9 HOH HOH . E 5 HOH A 61 361 52 HOH HOH . E 5 HOH A 62 362 4 HOH HOH . E 5 HOH A 63 363 30 HOH HOH . E 5 HOH A 64 364 177 HOH HOH . E 5 HOH A 65 365 64 HOH HOH . E 5 HOH A 66 366 92 HOH HOH . E 5 HOH A 67 367 1 HOH HOH . E 5 HOH A 68 368 45 HOH HOH . E 5 HOH A 69 369 23 HOH HOH . E 5 HOH A 70 370 8 HOH HOH . E 5 HOH A 71 371 100 HOH HOH . E 5 HOH A 72 372 50 HOH HOH . E 5 HOH A 73 373 57 HOH HOH . E 5 HOH A 74 374 37 HOH HOH . E 5 HOH A 75 375 140 HOH HOH . E 5 HOH A 76 376 55 HOH HOH . E 5 HOH A 77 377 43 HOH HOH . E 5 HOH A 78 378 99 HOH HOH . E 5 HOH A 79 379 15 HOH HOH . E 5 HOH A 80 380 46 HOH HOH . E 5 HOH A 81 381 62 HOH HOH . E 5 HOH A 82 382 73 HOH HOH . E 5 HOH A 83 383 67 HOH HOH . E 5 HOH A 84 384 145 HOH HOH . E 5 HOH A 85 385 86 HOH HOH . E 5 HOH A 86 386 26 HOH HOH . E 5 HOH A 87 387 60 HOH HOH . E 5 HOH A 88 388 70 HOH HOH . E 5 HOH A 89 389 111 HOH HOH . E 5 HOH A 90 390 12 HOH HOH . E 5 HOH A 91 391 51 HOH HOH . E 5 HOH A 92 392 41 HOH HOH . E 5 HOH A 93 393 176 HOH HOH . E 5 HOH A 94 394 150 HOH HOH . E 5 HOH A 95 395 28 HOH HOH . E 5 HOH A 96 396 63 HOH HOH . E 5 HOH A 97 397 116 HOH HOH . E 5 HOH A 98 398 91 HOH HOH . E 5 HOH A 99 399 7 HOH HOH . E 5 HOH A 100 400 98 HOH HOH . E 5 HOH A 101 401 110 HOH HOH . E 5 HOH A 102 402 38 HOH HOH . E 5 HOH A 103 403 39 HOH HOH . E 5 HOH A 104 404 85 HOH HOH . E 5 HOH A 105 405 58 HOH HOH . E 5 HOH A 106 406 109 HOH HOH . E 5 HOH A 107 407 76 HOH HOH . E 5 HOH A 108 408 144 HOH HOH . E 5 HOH A 109 409 34 HOH HOH . E 5 HOH A 110 410 48 HOH HOH . E 5 HOH A 111 411 121 HOH HOH . E 5 HOH A 112 412 178 HOH HOH . E 5 HOH A 113 413 139 HOH HOH . E 5 HOH A 114 414 162 HOH HOH . E 5 HOH A 115 415 27 HOH HOH . E 5 HOH A 116 416 169 HOH HOH . E 5 HOH A 117 417 25 HOH HOH . E 5 HOH A 118 418 115 HOH HOH . E 5 HOH A 119 419 167 HOH HOH . E 5 HOH A 120 420 81 HOH HOH . E 5 HOH A 121 421 96 HOH HOH . E 5 HOH A 122 422 72 HOH HOH . E 5 HOH A 123 423 164 HOH HOH . E 5 HOH A 124 424 141 HOH HOH . E 5 HOH A 125 425 106 HOH HOH . E 5 HOH A 126 426 112 HOH HOH . E 5 HOH A 127 427 156 HOH HOH . E 5 HOH A 128 428 133 HOH HOH . E 5 HOH A 129 429 101 HOH HOH . E 5 HOH A 130 430 78 HOH HOH . E 5 HOH A 131 431 149 HOH HOH . E 5 HOH A 132 432 165 HOH HOH . E 5 HOH A 133 433 134 HOH HOH . E 5 HOH A 134 434 129 HOH HOH . E 5 HOH A 135 435 158 HOH HOH . E 5 HOH A 136 436 146 HOH HOH . E 5 HOH A 137 437 74 HOH HOH . E 5 HOH A 138 438 161 HOH HOH . E 5 HOH A 139 439 125 HOH HOH . E 5 HOH A 140 440 132 HOH HOH . E 5 HOH A 141 441 170 HOH HOH . E 5 HOH A 142 442 172 HOH HOH . E 5 HOH A 143 443 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 4.296 30.88 21.767 1 21.99 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . B 2 4.122 31.393 23.187 1 23.67 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . B 2 3.539 31.705 20.769 1 22.13 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . B 2 3.938 29.429 21.826 1 19.65 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . B 2 5.866 30.982 21.379 1 18.91 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . B 2 6.544 30.735 19.926 1 19.61 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . B 2 6.722 29.286 19.734 1 19.01 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . B 2 5.786 31.437 18.869 1 19.05 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . B 2 7.965 31.37 19.982 1 18.19 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . B 2 8.476 32.758 19.533 1 19.88 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . B 2 8.56 32.799 18.046 1 19.83 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . B 2 7.688 33.829 20.196 1 20.33 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . B 2 9.971 32.809 20.044 1 21.13 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . B 2 10.301 32.578 21.428 1 22.69 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . B 2 11.684 33.139 21.746 1 19.81 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . B 2 12.727 32.469 20.98 1 20.98 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . B 2 11.818 34.613 21.39 1 22.09 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . B 2 12.753 35.222 22.275 1 24.81 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . B 2 12.368 34.558 19.964 1 23.49 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . B 2 13.04 35.738 19.588 1 27.76 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . B 2 13.331 33.375 20.091 1 21.81 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . B 2 13.577 32.658 18.848 1 20.22 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . B 2 12.643 32.147 17.963 1 19.63 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . B 2 13.191 31.545 16.936 1 19.9 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . B 2 14.561 31.643 17.165 1 19.54 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . B 2 15.651 31.178 16.397 1 19.89 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . B 2 15.65 30.555 15.325 1 21.92 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . B 2 16.873 31.496 16.985 1 21.97 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . B 2 17.019 32.177 18.165 1 23.38 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . B 2 18.294 32.377 18.546 1 25.2 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . B 2 16 32.632 18.903 1 20.77 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . B 2 14.805 32.322 18.341 1 21.55 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #