data_5UHV # _model_server_result.job_id jF1wqYG_y8GvVp6oFDi_jg _model_server_result.datetime_utc '2024-12-03 04:54:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5UHV # _exptl.entry_id 5UHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UHV _cell.length_a 39.007 _cell.length_b 39.007 _cell.length_c 159.175 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 5UHV _atom_sites.fract_transf_matrix[1][1] 0.025636 _atom_sites.fract_transf_matrix[1][2] 0.014801 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 167 GNP GNP . C 3 MG A 1 202 1 MG MG . D 4 GOL A 1 203 1 GOL GOL . E 5 HOH A 1 301 13 HOH HOH . E 5 HOH A 2 302 94 HOH HOH . E 5 HOH A 3 303 113 HOH HOH . E 5 HOH A 4 304 163 HOH HOH . E 5 HOH A 5 305 21 HOH HOH . E 5 HOH A 6 306 137 HOH HOH . E 5 HOH A 7 307 114 HOH HOH . E 5 HOH A 8 308 160 HOH HOH . E 5 HOH A 9 309 123 HOH HOH . E 5 HOH A 10 310 77 HOH HOH . E 5 HOH A 11 311 95 HOH HOH . E 5 HOH A 12 312 90 HOH HOH . E 5 HOH A 13 313 166 HOH HOH . E 5 HOH A 14 314 10 HOH HOH . E 5 HOH A 15 315 59 HOH HOH . E 5 HOH A 16 316 47 HOH HOH . E 5 HOH A 17 317 88 HOH HOH . E 5 HOH A 18 318 107 HOH HOH . E 5 HOH A 19 319 80 HOH HOH . E 5 HOH A 20 320 6 HOH HOH . E 5 HOH A 21 321 105 HOH HOH . E 5 HOH A 22 322 152 HOH HOH . E 5 HOH A 23 323 40 HOH HOH . E 5 HOH A 24 324 17 HOH HOH . E 5 HOH A 25 325 175 HOH HOH . E 5 HOH A 26 326 24 HOH HOH . E 5 HOH A 27 327 2 HOH HOH . E 5 HOH A 28 328 83 HOH HOH . E 5 HOH A 29 329 68 HOH HOH . E 5 HOH A 30 330 22 HOH HOH . E 5 HOH A 31 331 82 HOH HOH . E 5 HOH A 32 332 128 HOH HOH . E 5 HOH A 33 333 168 HOH HOH . E 5 HOH A 34 334 19 HOH HOH . E 5 HOH A 35 335 126 HOH HOH . E 5 HOH A 36 336 31 HOH HOH . E 5 HOH A 37 337 148 HOH HOH . E 5 HOH A 38 338 29 HOH HOH . E 5 HOH A 39 339 42 HOH HOH . E 5 HOH A 40 340 89 HOH HOH . E 5 HOH A 41 341 65 HOH HOH . E 5 HOH A 42 342 20 HOH HOH . E 5 HOH A 43 343 32 HOH HOH . E 5 HOH A 44 344 124 HOH HOH . E 5 HOH A 45 345 18 HOH HOH . E 5 HOH A 46 346 35 HOH HOH . E 5 HOH A 47 347 119 HOH HOH . E 5 HOH A 48 348 71 HOH HOH . E 5 HOH A 49 349 53 HOH HOH . E 5 HOH A 50 350 97 HOH HOH . E 5 HOH A 51 351 153 HOH HOH . E 5 HOH A 52 352 3 HOH HOH . E 5 HOH A 53 353 16 HOH HOH . E 5 HOH A 54 354 108 HOH HOH . E 5 HOH A 55 355 56 HOH HOH . E 5 HOH A 56 356 36 HOH HOH . E 5 HOH A 57 357 103 HOH HOH . E 5 HOH A 58 358 11 HOH HOH . E 5 HOH A 59 359 33 HOH HOH . E 5 HOH A 60 360 9 HOH HOH . E 5 HOH A 61 361 52 HOH HOH . E 5 HOH A 62 362 4 HOH HOH . E 5 HOH A 63 363 30 HOH HOH . E 5 HOH A 64 364 177 HOH HOH . E 5 HOH A 65 365 64 HOH HOH . E 5 HOH A 66 366 92 HOH HOH . E 5 HOH A 67 367 1 HOH HOH . E 5 HOH A 68 368 45 HOH HOH . E 5 HOH A 69 369 23 HOH HOH . E 5 HOH A 70 370 8 HOH HOH . E 5 HOH A 71 371 100 HOH HOH . E 5 HOH A 72 372 50 HOH HOH . E 5 HOH A 73 373 57 HOH HOH . E 5 HOH A 74 374 37 HOH HOH . E 5 HOH A 75 375 140 HOH HOH . E 5 HOH A 76 376 55 HOH HOH . E 5 HOH A 77 377 43 HOH HOH . E 5 HOH A 78 378 99 HOH HOH . E 5 HOH A 79 379 15 HOH HOH . E 5 HOH A 80 380 46 HOH HOH . E 5 HOH A 81 381 62 HOH HOH . E 5 HOH A 82 382 73 HOH HOH . E 5 HOH A 83 383 67 HOH HOH . E 5 HOH A 84 384 145 HOH HOH . E 5 HOH A 85 385 86 HOH HOH . E 5 HOH A 86 386 26 HOH HOH . E 5 HOH A 87 387 60 HOH HOH . E 5 HOH A 88 388 70 HOH HOH . E 5 HOH A 89 389 111 HOH HOH . E 5 HOH A 90 390 12 HOH HOH . E 5 HOH A 91 391 51 HOH HOH . E 5 HOH A 92 392 41 HOH HOH . E 5 HOH A 93 393 176 HOH HOH . E 5 HOH A 94 394 150 HOH HOH . E 5 HOH A 95 395 28 HOH HOH . E 5 HOH A 96 396 63 HOH HOH . E 5 HOH A 97 397 116 HOH HOH . E 5 HOH A 98 398 91 HOH HOH . E 5 HOH A 99 399 7 HOH HOH . E 5 HOH A 100 400 98 HOH HOH . E 5 HOH A 101 401 110 HOH HOH . E 5 HOH A 102 402 38 HOH HOH . E 5 HOH A 103 403 39 HOH HOH . E 5 HOH A 104 404 85 HOH HOH . E 5 HOH A 105 405 58 HOH HOH . E 5 HOH A 106 406 109 HOH HOH . E 5 HOH A 107 407 76 HOH HOH . E 5 HOH A 108 408 144 HOH HOH . E 5 HOH A 109 409 34 HOH HOH . E 5 HOH A 110 410 48 HOH HOH . E 5 HOH A 111 411 121 HOH HOH . E 5 HOH A 112 412 178 HOH HOH . E 5 HOH A 113 413 139 HOH HOH . E 5 HOH A 114 414 162 HOH HOH . E 5 HOH A 115 415 27 HOH HOH . E 5 HOH A 116 416 169 HOH HOH . E 5 HOH A 117 417 25 HOH HOH . E 5 HOH A 118 418 115 HOH HOH . E 5 HOH A 119 419 167 HOH HOH . E 5 HOH A 120 420 81 HOH HOH . E 5 HOH A 121 421 96 HOH HOH . E 5 HOH A 122 422 72 HOH HOH . E 5 HOH A 123 423 164 HOH HOH . E 5 HOH A 124 424 141 HOH HOH . E 5 HOH A 125 425 106 HOH HOH . E 5 HOH A 126 426 112 HOH HOH . E 5 HOH A 127 427 156 HOH HOH . E 5 HOH A 128 428 133 HOH HOH . E 5 HOH A 129 429 101 HOH HOH . E 5 HOH A 130 430 78 HOH HOH . E 5 HOH A 131 431 149 HOH HOH . E 5 HOH A 132 432 165 HOH HOH . E 5 HOH A 133 433 134 HOH HOH . E 5 HOH A 134 434 129 HOH HOH . E 5 HOH A 135 435 158 HOH HOH . E 5 HOH A 136 436 146 HOH HOH . E 5 HOH A 137 437 74 HOH HOH . E 5 HOH A 138 438 161 HOH HOH . E 5 HOH A 139 439 125 HOH HOH . E 5 HOH A 140 440 132 HOH HOH . E 5 HOH A 141 441 170 HOH HOH . E 5 HOH A 142 442 172 HOH HOH . E 5 HOH A 143 443 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -0.538 39.872 20.7 1 50.59 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 4 -0.08 39.887 22.033 1 48.01 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 4 0.565 40.423 19.806 1 48.9 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 4 1.481 41.148 20.594 1 48.63 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 4 1.305 39.251 19.189 1 46.29 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 4 2.162 39.735 18.179 1 46.81 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #