data_5UII # _model_server_result.job_id bTwKeD6FPwImcR0vV5halg _model_server_result.datetime_utc '2024-11-01 11:27:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5UII # _exptl.entry_id 5UII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.217 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-butyl-N'-(diaminomethylidene)guanidine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.54 _cell.angle_gamma 90 _cell.entry_id 5UII _cell.length_a 73.395 _cell.length_b 58.724 _cell.length_c 38.595 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UII _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 16 A MET 16 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc2 C CA CA . A CA 202 1_555 F O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 C CA CA . A CA 202 1_555 F O HOH . A HOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc4 C CA CA . A CA 202 1_555 F O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc5 C CA CA . A CA 202 1_555 F O HOH . A HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc6 C CA CA . A CA 202 1_555 F O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc7 C CA CA . A CA 202 1_555 F O HOH . A HOH 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc8 D NA NA . A NA 203 1_555 F O HOH . A HOH 329 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc9 D NA NA . A NA 203 1_555 F O HOH . A HOH 343 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc10 D NA NA . A NA 203 1_555 F O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc11 D NA NA . A NA 203 1_555 F O HOH . A HOH 354 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc12 D NA NA . A NA 203 1_555 F O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc13 D NA NA . A NA 203 1_555 F O HOH . A HOH 438 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? # _chem_comp.formula 'C6 H15 N5' _chem_comp.formula_weight 157.217 _chem_comp.id BFR _chem_comp.mon_nstd_flag . _chem_comp.name "N-butyl-N'-(diaminomethylidene)guanidine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Buformin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C6 BFR sing 70 n n C6 N4 BFR sing 71 n n C6 N3 BFR doub 72 n n N3 C5 BFR sing 73 n n C5 N1 BFR sing 74 n n C5 N2 BFR doub 75 n n N1 C4 BFR sing 76 n n C3 C4 BFR sing 77 n n C3 C2 BFR sing 78 n n C2 HC22 BFR sing 79 n n C3 HC33 BFR sing 80 n n C3 HC32 BFR sing 81 n n C4 HC43 BFR sing 82 n n C4 HC42 BFR sing 83 n n N1 HN1 BFR sing 84 n n N2 HN22 BFR sing 85 n n N4 HN42 BFR sing 86 n n N4 HN43 BFR sing 87 n n N5 HN52 BFR sing 88 n n N5 HN53 BFR sing 89 n n C2 C1 BFR sing 90 n n C1 HC11 BFR sing 91 n n C2 HC23 BFR sing 92 n n C1 HC13 BFR sing 93 n n C1 HC12 BFR sing 94 n n # _atom_sites.entry_id 5UII _atom_sites.fract_transf_matrix[1][1] 0.013625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004307 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 1 NAP NAP . C 3 CA A 1 202 1 CA CA . D 4 NA A 1 203 1 NA NA . E 5 BFR A 1 204 1 BFR BFR . F 6 HOH A 1 301 32 HOH HOH . F 6 HOH A 2 302 64 HOH HOH . F 6 HOH A 3 303 201 HOH HOH . F 6 HOH A 4 304 118 HOH HOH . F 6 HOH A 5 305 146 HOH HOH . F 6 HOH A 6 306 142 HOH HOH . F 6 HOH A 7 307 54 HOH HOH . F 6 HOH A 8 308 152 HOH HOH . F 6 HOH A 9 309 134 HOH HOH . F 6 HOH A 10 310 106 HOH HOH . F 6 HOH A 11 311 179 HOH HOH . F 6 HOH A 12 312 154 HOH HOH . F 6 HOH A 13 313 177 HOH HOH . F 6 HOH A 14 314 166 HOH HOH . F 6 HOH A 15 315 57 HOH HOH . F 6 HOH A 16 316 78 HOH HOH . F 6 HOH A 17 317 207 HOH HOH . F 6 HOH A 18 318 97 HOH HOH . F 6 HOH A 19 319 31 HOH HOH . F 6 HOH A 20 320 71 HOH HOH . F 6 HOH A 21 321 103 HOH HOH . F 6 HOH A 22 322 193 HOH HOH . F 6 HOH A 23 323 36 HOH HOH . F 6 HOH A 24 324 72 HOH HOH . F 6 HOH A 25 325 108 HOH HOH . F 6 HOH A 26 326 53 HOH HOH . F 6 HOH A 27 327 9 HOH HOH . F 6 HOH A 28 328 129 HOH HOH . F 6 HOH A 29 329 58 HOH HOH . F 6 HOH A 30 330 211 HOH HOH . F 6 HOH A 31 331 127 HOH HOH . F 6 HOH A 32 332 175 HOH HOH . F 6 HOH A 33 333 126 HOH HOH . F 6 HOH A 34 334 114 HOH HOH . F 6 HOH A 35 335 27 HOH HOH . F 6 HOH A 36 336 52 HOH HOH . F 6 HOH A 37 337 184 HOH HOH . F 6 HOH A 38 338 24 HOH HOH . F 6 HOH A 39 339 84 HOH HOH . F 6 HOH A 40 340 155 HOH HOH . F 6 HOH A 41 341 17 HOH HOH . F 6 HOH A 42 342 41 HOH HOH . F 6 HOH A 43 343 12 HOH HOH . F 6 HOH A 44 344 74 HOH HOH . F 6 HOH A 45 345 122 HOH HOH . F 6 HOH A 46 346 200 HOH HOH . F 6 HOH A 47 347 49 HOH HOH . F 6 HOH A 48 348 16 HOH HOH . F 6 HOH A 49 349 42 HOH HOH . F 6 HOH A 50 350 137 HOH HOH . F 6 HOH A 51 351 13 HOH HOH . F 6 HOH A 52 352 158 HOH HOH . F 6 HOH A 53 353 182 HOH HOH . F 6 HOH A 54 354 48 HOH HOH . F 6 HOH A 55 355 56 HOH HOH . F 6 HOH A 56 356 6 HOH HOH . F 6 HOH A 57 357 55 HOH HOH . F 6 HOH A 58 358 60 HOH HOH . F 6 HOH A 59 359 15 HOH HOH . F 6 HOH A 60 360 135 HOH HOH . F 6 HOH A 61 361 23 HOH HOH . F 6 HOH A 62 362 83 HOH HOH . F 6 HOH A 63 363 116 HOH HOH . F 6 HOH A 64 364 4 HOH HOH . F 6 HOH A 65 365 124 HOH HOH . F 6 HOH A 66 366 51 HOH HOH . F 6 HOH A 67 367 70 HOH HOH . F 6 HOH A 68 368 66 HOH HOH . F 6 HOH A 69 369 45 HOH HOH . F 6 HOH A 70 370 81 HOH HOH . F 6 HOH A 71 371 151 HOH HOH . F 6 HOH A 72 372 88 HOH HOH . F 6 HOH A 73 373 11 HOH HOH . F 6 HOH A 74 374 139 HOH HOH . F 6 HOH A 75 375 34 HOH HOH . F 6 HOH A 76 376 10 HOH HOH . F 6 HOH A 77 377 82 HOH HOH . F 6 HOH A 78 378 133 HOH HOH . F 6 HOH A 79 379 75 HOH HOH . F 6 HOH A 80 380 2 HOH HOH . F 6 HOH A 81 381 140 HOH HOH . F 6 HOH A 82 382 7 HOH HOH . F 6 HOH A 83 383 123 HOH HOH . F 6 HOH A 84 384 43 HOH HOH . F 6 HOH A 85 385 85 HOH HOH . F 6 HOH A 86 386 8 HOH HOH . F 6 HOH A 87 387 28 HOH HOH . F 6 HOH A 88 388 172 HOH HOH . F 6 HOH A 89 389 176 HOH HOH . F 6 HOH A 90 390 183 HOH HOH . F 6 HOH A 91 391 131 HOH HOH . F 6 HOH A 92 392 149 HOH HOH . F 6 HOH A 93 393 20 HOH HOH . F 6 HOH A 94 394 203 HOH HOH . F 6 HOH A 95 395 19 HOH HOH . F 6 HOH A 96 396 92 HOH HOH . F 6 HOH A 97 397 119 HOH HOH . F 6 HOH A 98 398 26 HOH HOH . F 6 HOH A 99 399 50 HOH HOH . F 6 HOH A 100 400 68 HOH HOH . F 6 HOH A 101 401 153 HOH HOH . F 6 HOH A 102 402 67 HOH HOH . F 6 HOH A 103 403 94 HOH HOH . F 6 HOH A 104 404 102 HOH HOH . F 6 HOH A 105 405 25 HOH HOH . F 6 HOH A 106 406 37 HOH HOH . F 6 HOH A 107 407 188 HOH HOH . F 6 HOH A 108 408 73 HOH HOH . F 6 HOH A 109 409 14 HOH HOH . F 6 HOH A 110 410 44 HOH HOH . F 6 HOH A 111 411 96 HOH HOH . F 6 HOH A 112 412 90 HOH HOH . F 6 HOH A 113 413 39 HOH HOH . F 6 HOH A 114 414 33 HOH HOH . F 6 HOH A 115 415 35 HOH HOH . F 6 HOH A 116 416 208 HOH HOH . F 6 HOH A 117 417 87 HOH HOH . F 6 HOH A 118 418 104 HOH HOH . F 6 HOH A 119 419 136 HOH HOH . F 6 HOH A 120 420 112 HOH HOH . F 6 HOH A 121 421 132 HOH HOH . F 6 HOH A 122 422 160 HOH HOH . F 6 HOH A 123 423 21 HOH HOH . F 6 HOH A 124 424 110 HOH HOH . F 6 HOH A 125 425 98 HOH HOH . F 6 HOH A 126 426 141 HOH HOH . F 6 HOH A 127 427 18 HOH HOH . F 6 HOH A 128 428 95 HOH HOH . F 6 HOH A 129 429 148 HOH HOH . F 6 HOH A 130 430 150 HOH HOH . F 6 HOH A 131 431 165 HOH HOH . F 6 HOH A 132 432 29 HOH HOH . F 6 HOH A 133 433 46 HOH HOH . F 6 HOH A 134 434 61 HOH HOH . F 6 HOH A 135 435 38 HOH HOH . F 6 HOH A 136 436 40 HOH HOH . F 6 HOH A 137 437 77 HOH HOH . F 6 HOH A 138 438 76 HOH HOH . F 6 HOH A 139 439 111 HOH HOH . F 6 HOH A 140 440 80 HOH HOH . F 6 HOH A 141 441 105 HOH HOH . F 6 HOH A 142 442 169 HOH HOH . F 6 HOH A 143 443 79 HOH HOH . F 6 HOH A 144 444 128 HOH HOH . F 6 HOH A 145 445 168 HOH HOH . F 6 HOH A 146 446 214 HOH HOH . F 6 HOH A 147 447 22 HOH HOH . F 6 HOH A 148 448 69 HOH HOH . F 6 HOH A 149 449 202 HOH HOH . F 6 HOH A 150 450 125 HOH HOH . F 6 HOH A 151 451 5 HOH HOH . F 6 HOH A 152 452 205 HOH HOH . F 6 HOH A 153 453 199 HOH HOH . F 6 HOH A 154 454 99 HOH HOH . F 6 HOH A 155 455 86 HOH HOH . F 6 HOH A 156 456 213 HOH HOH . F 6 HOH A 157 457 89 HOH HOH . F 6 HOH A 158 458 185 HOH HOH . F 6 HOH A 159 459 156 HOH HOH . F 6 HOH A 160 460 206 HOH HOH . F 6 HOH A 161 461 100 HOH HOH . F 6 HOH A 162 462 144 HOH HOH . F 6 HOH A 163 463 30 HOH HOH . F 6 HOH A 164 464 164 HOH HOH . F 6 HOH A 165 465 170 HOH HOH . F 6 HOH A 166 466 212 HOH HOH . F 6 HOH A 167 467 157 HOH HOH . F 6 HOH A 168 468 187 HOH HOH . F 6 HOH A 169 469 159 HOH HOH . F 6 HOH A 170 470 180 HOH HOH . F 6 HOH A 171 471 107 HOH HOH . F 6 HOH A 172 472 120 HOH HOH . F 6 HOH A 173 473 195 HOH HOH . F 6 HOH A 174 474 171 HOH HOH . F 6 HOH A 175 475 113 HOH HOH . F 6 HOH A 176 476 65 HOH HOH . F 6 HOH A 177 477 191 HOH HOH . F 6 HOH A 178 478 93 HOH HOH . F 6 HOH A 179 479 204 HOH HOH . F 6 HOH A 180 480 62 HOH HOH . F 6 HOH A 181 481 115 HOH HOH . F 6 HOH A 182 482 145 HOH HOH . F 6 HOH A 183 483 147 HOH HOH . F 6 HOH A 184 484 196 HOH HOH . F 6 HOH A 185 485 192 HOH HOH . F 6 HOH A 186 486 117 HOH HOH . F 6 HOH A 187 487 210 HOH HOH . F 6 HOH A 188 488 63 HOH HOH . F 6 HOH A 189 489 186 HOH HOH . F 6 HOH A 190 490 162 HOH HOH . F 6 HOH A 191 491 143 HOH HOH . F 6 HOH A 192 492 91 HOH HOH . F 6 HOH A 193 493 194 HOH HOH . F 6 HOH A 194 494 47 HOH HOH . F 6 HOH A 195 495 190 HOH HOH . F 6 HOH A 196 496 209 HOH HOH . F 6 HOH A 197 497 59 HOH HOH . F 6 HOH A 198 498 109 HOH HOH . F 6 HOH A 199 499 101 HOH HOH . F 6 HOH A 200 500 130 HOH HOH . F 6 HOH A 201 501 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BFR . . . E 5 10.641 6.79 6.184 1 38.02 ? C2 BFR 204 A 1 HETATM 2 C C3 BFR . . . E 5 10.9 8.063 5.372 1 35.9 ? C3 BFR 204 A 1 HETATM 3 C C4 BFR . . . E 5 12.147 8.843 5.794 1 27.91 ? C4 BFR 204 A 1 HETATM 4 N N1 BFR . . . E 5 12.627 9.58 4.612 1 20.47 ? N1 BFR 204 A 1 HETATM 5 C C5 BFR . . . E 5 13.78 10.267 4.491 1 17.21 ? C5 BFR 204 A 1 HETATM 6 N N2 BFR . . . E 5 14.6 10.357 5.546 1 15.65 ? N2 BFR 204 A 1 HETATM 7 N N3 BFR . . . E 5 14.197 10.864 3.366 1 15.27 ? N3 BFR 204 A 1 HETATM 8 C C6 BFR . . . E 5 13.42 11.138 2.33 1 16.17 ? C6 BFR 204 A 1 HETATM 9 N N4 BFR . . . E 5 12.07 11.313 2.377 1 17.97 ? N4 BFR 204 A 1 HETATM 10 N N5 BFR . . . E 5 13.997 11.259 1.128 1 15.24 ? N5 BFR 204 A 1 HETATM 11 H HC22 BFR . . . E 5 10.182 7.06 7.145 1 45.62 ? HC22 BFR 204 A 1 HETATM 12 H HC33 BFR . . . E 5 10.997 7.795 4.31 1 43.08 ? HC33 BFR 204 A 1 HETATM 13 H HC32 BFR . . . E 5 10.027 8.726 5.45 1 43.08 ? HC32 BFR 204 A 1 HETATM 14 H HC43 BFR . . . E 5 11.902 9.56 6.587 1 33.49 ? HC43 BFR 204 A 1 HETATM 15 H HC42 BFR . . . E 5 12.925 8.159 6.161 1 33.49 ? HC42 BFR 204 A 1 HETATM 16 H HN1 BFR . . . E 5 12.044 9.538 3.785 1 24.57 ? HN1 BFR 204 A 1 HETATM 17 H HN22 BFR . . . E 5 14.394 9.945 6.443 1 18.78 ? HN22 BFR 204 A 1 HETATM 18 H HN42 BFR . . . E 5 11.517 11.2 1.537 1 21.57 ? HN42 BFR 204 A 1 HETATM 19 H HN43 BFR . . . E 5 11.697 11.969 3.052 1 21.57 ? HN43 BFR 204 A 1 HETATM 20 H HN52 BFR . . . E 5 14.997 11.134 1.066 1 18.29 ? HN52 BFR 204 A 1 HETATM 21 H HN53 BFR . . . E 5 13.483 11.467 0.284 1 18.29 ? HN53 BFR 204 A 1 HETATM 22 H HC23 BFR . . . E 5 11.6 6.31 6.422 1 45.62 ? HC23 BFR 204 A 1 HETATM 23 H HN23 BFR . . . E 5 15.461 10.873 5.433 1 18.78 ? HN23 BFR 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #