data_5UIR # _model_server_result.job_id mkf-YCMIgUQaNQACsi_xlw _model_server_result.datetime_utc '2024-10-19 12:36:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 5UIR # _exptl.entry_id 5UIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.38 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-cyanophenyl)-3-[(propan-2-yl)oxy]naphthalene-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UIR _cell.length_a 87.695 _cell.length_b 110.859 _cell.length_c 140.491 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 207 A MET 344 1_555 A N TPO 208 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 A C TPO 208 A TPO 345 1_555 A N SEP 209 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 A C SEP 209 A SEP 346 1_555 A N ARG 210 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale4 B C TPO 205 B TPO 342 1_555 B N VAL 206 B VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 B C MET 207 B MET 344 1_555 B N TPO 208 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale6 B C TPO 208 B TPO 345 1_555 B N SEP 209 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale7 B C SEP 209 B SEP 346 1_555 B N ARG 210 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? # _chem_comp.formula 'C21 H18 N2 O2' _chem_comp.formula_weight 330.38 _chem_comp.id 8BY _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-cyanophenyl)-3-[(propan-2-yl)oxy]naphthalene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C23 8BY doub 1 n n N25 C23 8BY sing 2 n n C23 C22 8BY sing 3 n n C22 C21 8BY doub 4 n y C22 C5 8BY sing 5 n y C21 C8 8BY sing 6 n y O4 C5 8BY sing 7 n n O4 C2 8BY sing 8 n n C5 C6 8BY doub 9 n y C8 C9 8BY sing 10 n y C8 C7 8BY doub 11 n y C9 C10 8BY doub 12 n y C1 C2 8BY sing 13 n n C2 C3 8BY sing 14 n n C6 C7 8BY sing 15 n y C7 C12 8BY sing 16 n y C10 C11 8BY sing 17 n y C12 C11 8BY doub 18 n y C12 C13 8BY sing 19 n n C13 C14 8BY doub 20 n y C13 C18 8BY sing 21 n y C14 C15 8BY sing 22 n y C18 C17 8BY doub 23 n y C15 C16 8BY doub 24 n y C17 C16 8BY sing 25 n y C16 C19 8BY sing 26 n n C19 N20 8BY trip 27 n n C6 HC6 8BY sing 28 n n C9 HC9 8BY sing 29 n n C21 HC21 8BY sing 30 n n C18 HC18 8BY sing 31 n n C1 HC1B 8BY sing 32 n n C1 HC1A 8BY sing 33 n n C1 HC1C 8BY sing 34 n n C2 HC2 8BY sing 35 n n C3 HC3C 8BY sing 36 n n C3 HC3B 8BY sing 37 n n C3 HC3A 8BY sing 38 n n C10 HC10 8BY sing 39 n n C11 HC11 8BY sing 40 n n C14 HC14 8BY sing 41 n n C15 HC15 8BY sing 42 n n C17 HC17 8BY sing 43 n n N25 H25B 8BY sing 44 n n N25 H25A 8BY sing 45 n n # _atom_sites.entry_id 5UIR _atom_sites.fract_transf_matrix[1][1] 0.011403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8BY A 1 800 800 8BY PFE . D 2 8BY B 1 801 801 8BY PFE . E 3 HOH A 1 901 8 HOH HOH . E 3 HOH A 2 902 18 HOH HOH . E 3 HOH A 3 903 23 HOH HOH . E 3 HOH A 4 904 7 HOH HOH . E 3 HOH A 5 905 4 HOH HOH . E 3 HOH A 6 906 19 HOH HOH . E 3 HOH A 7 907 10 HOH HOH . E 3 HOH A 8 908 25 HOH HOH . E 3 HOH A 9 909 9 HOH HOH . E 3 HOH A 10 910 26 HOH HOH . E 3 HOH A 11 911 2 HOH HOH . E 3 HOH A 12 912 17 HOH HOH . E 3 HOH A 13 913 24 HOH HOH . E 3 HOH A 14 914 32 HOH HOH . E 3 HOH A 15 915 3 HOH HOH . E 3 HOH A 16 916 16 HOH HOH . E 3 HOH A 17 917 14 HOH HOH . E 3 HOH A 18 918 15 HOH HOH . E 3 HOH A 19 919 12 HOH HOH . F 3 HOH B 1 901 22 HOH HOH . F 3 HOH B 2 902 33 HOH HOH . F 3 HOH B 3 903 30 HOH HOH . F 3 HOH B 4 904 13 HOH HOH . F 3 HOH B 5 905 20 HOH HOH . F 3 HOH B 6 906 29 HOH HOH . F 3 HOH B 7 907 6 HOH HOH . F 3 HOH B 8 908 5 HOH HOH . F 3 HOH B 9 909 21 HOH HOH . F 3 HOH B 10 910 11 HOH HOH . F 3 HOH B 11 911 1 HOH HOH . F 3 HOH B 12 912 28 HOH HOH . F 3 HOH B 13 913 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 8BY . . . C 2 -8.324 17.451 11.146 1 39.39 ? C7 8BY 800 A 1 HETATM 2 C C6 8BY . . . C 2 -9.726 17.211 11.02 1 38.45 ? C6 8BY 800 A 1 HETATM 3 C C9 8BY . . . C 2 -6.162 17.82 10.044 1 38.64 ? C9 8BY 800 A 1 HETATM 4 C C13 8BY . . . C 2 -8.355 17.621 13.706 1 43.21 ? C13 8BY 800 A 1 HETATM 5 C C21 8BY . . . C 2 -8.227 17.601 8.71 1 41.85 ? C21 8BY 800 A 1 HETATM 6 C C8 8BY . . . C 2 -7.564 17.635 9.952 1 40.08 ? C8 8BY 800 A 1 HETATM 7 C C18 8BY . . . C 2 -8.125 16.709 14.73 1 45 ? C18 8BY 800 A 1 HETATM 8 C C16 8BY . . . C 2 -9.325 18.081 16.293 1 50.67 ? C16 8BY 800 A 1 HETATM 9 C C19 8BY . . . C 2 -9.791 18.323 17.636 1 56.15 ? C19 8BY 800 A 1 HETATM 10 C C1 8BY . . . C 2 -13.924 17.406 10.098 1 38.46 ? C1 8BY 800 A 1 HETATM 11 C C2 8BY . . . C 2 -12.631 16.928 10.706 1 41.84 ? C2 8BY 800 A 1 HETATM 12 C C3 8BY . . . C 2 -12.69 15.503 11.14 1 43.08 ? C3 8BY 800 A 1 HETATM 13 O O4 8BY . . . C 2 -11.68 17.037 9.615 1 39.78 ? O4 8BY 800 A 1 HETATM 14 C C5 8BY . . . C 2 -10.326 17.192 9.797 1 38.39 ? C5 8BY 800 A 1 HETATM 15 C C10 8BY . . . C 2 -5.538 17.802 11.254 1 39.32 ? C10 8BY 800 A 1 HETATM 16 C C11 8BY . . . C 2 -6.269 17.631 12.421 1 38.66 ? C11 8BY 800 A 1 HETATM 17 C C12 8BY . . . C 2 -7.639 17.498 12.406 1 38.6 ? C12 8BY 800 A 1 HETATM 18 C C14 8BY . . . C 2 -9.136 18.744 13.995 1 45.29 ? C14 8BY 800 A 1 HETATM 19 C C15 8BY . . . C 2 -9.616 18.976 15.27 1 45.89 ? C15 8BY 800 A 1 HETATM 20 C C17 8BY . . . C 2 -8.594 16.936 16.008 1 47.71 ? C17 8BY 800 A 1 HETATM 21 N N20 8BY . . . C 2 -10.15 18.479 18.709 1 58.86 ? N20 8BY 800 A 1 HETATM 22 C C22 8BY . . . C 2 -9.577 17.371 8.62 1 41.41 ? C22 8BY 800 A 1 HETATM 23 C C23 8BY . . . C 2 -10.117 17.323 7.218 1 43.18 ? C23 8BY 800 A 1 HETATM 24 O O24 8BY . . . C 2 -9.326 17.326 6.257 1 42.19 ? O24 8BY 800 A 1 HETATM 25 N N25 8BY . . . C 2 -11.433 17.199 7.043 1 43.54 ? N25 8BY 800 A 1 HETATM 26 H HC6 8BY . . . C 2 -10.285 16.986 11.926 1 38.57 ? HC6 8BY 800 A 1 HETATM 27 H HC9 8BY . . . C 2 -5.585 17.971 9.133 1 38.37 ? HC9 8BY 800 A 1 HETATM 28 H HC21 8BY . . . C 2 -7.576 17.798 7.86 1 42.38 ? HC21 8BY 800 A 1 HETATM 29 H HC18 8BY . . . C 2 -7.564 15.801 14.514 1 45.74 ? HC18 8BY 800 A 1 HETATM 30 H HC1B 8BY . . . C 2 -14.001 18.492 10.097 1 38.06 ? HC1B 8BY 800 A 1 HETATM 31 H HC1A 8BY . . . C 2 -14.785 17.026 10.644 1 38.35 ? HC1A 8BY 800 A 1 HETATM 32 H HC1C 8BY . . . C 2 -14.032 17.106 9.058 1 37.76 ? HC1C 8BY 800 A 1 HETATM 33 H HC2 8BY . . . C 2 -12.398 17.584 11.543 1 43.09 ? HC2 8BY 800 A 1 HETATM 34 H HC3C 8BY . . . C 2 -12.626 14.81 10.302 1 43.58 ? HC3C 8BY 800 A 1 HETATM 35 H HC3B 8BY . . . C 2 -13.619 15.276 11.661 1 42.62 ? HC3B 8BY 800 A 1 HETATM 36 H HC3A 8BY . . . C 2 -11.872 15.243 11.808 1 43.47 ? HC3A 8BY 800 A 1 HETATM 37 H HC10 8BY . . . C 2 -4.459 17.939 11.31 1 39.31 ? HC10 8BY 800 A 1 HETATM 38 H HC11 8BY . . . C 2 -5.74 17.577 13.371 1 39.32 ? HC11 8BY 800 A 1 HETATM 39 H HC14 8BY . . . C 2 -9.383 19.446 13.2 1 45.65 ? HC14 8BY 800 A 1 HETATM 40 H HC15 8BY . . . C 2 -10.252 19.837 15.466 1 45.6 ? HC15 8BY 800 A 1 HETATM 41 H HC17 8BY . . . C 2 -8.437 16.2 16.791 1 48.28 ? HC17 8BY 800 A 1 HETATM 42 H H25B 8BY . . . C 2 -11.802 17.174 6.098 1 44.13 ? H25B 8BY 800 A 1 HETATM 43 H H25A 8BY . . . C 2 -12.131 17.127 7.776 1 43.07 ? H25A 8BY 800 A 1 # _model_server_stats.io_time_ms 179 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #