data_5UIR # _model_server_result.job_id UPmXnedZXRBn-cyW3XxGkg _model_server_result.datetime_utc '2024-11-22 11:09:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 5UIR # _exptl.entry_id 5UIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.38 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-cyanophenyl)-3-[(propan-2-yl)oxy]naphthalene-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UIR _cell.length_a 87.695 _cell.length_b 110.859 _cell.length_c 140.491 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 207 A MET 344 1_555 A N TPO 208 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 A C TPO 208 A TPO 345 1_555 A N SEP 209 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 A C SEP 209 A SEP 346 1_555 A N ARG 210 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale4 B C TPO 205 B TPO 342 1_555 B N VAL 206 B VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 B C MET 207 B MET 344 1_555 B N TPO 208 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale6 B C TPO 208 B TPO 345 1_555 B N SEP 209 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale7 B C SEP 209 B SEP 346 1_555 B N ARG 210 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? # _chem_comp.formula 'C21 H18 N2 O2' _chem_comp.formula_weight 330.38 _chem_comp.id 8BY _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-cyanophenyl)-3-[(propan-2-yl)oxy]naphthalene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C23 8BY doub 1 n n N25 C23 8BY sing 2 n n C23 C22 8BY sing 3 n n C22 C21 8BY doub 4 n y C22 C5 8BY sing 5 n y C21 C8 8BY sing 6 n y O4 C5 8BY sing 7 n n O4 C2 8BY sing 8 n n C5 C6 8BY doub 9 n y C8 C9 8BY sing 10 n y C8 C7 8BY doub 11 n y C9 C10 8BY doub 12 n y C1 C2 8BY sing 13 n n C2 C3 8BY sing 14 n n C6 C7 8BY sing 15 n y C7 C12 8BY sing 16 n y C10 C11 8BY sing 17 n y C12 C11 8BY doub 18 n y C12 C13 8BY sing 19 n n C13 C14 8BY doub 20 n y C13 C18 8BY sing 21 n y C14 C15 8BY sing 22 n y C18 C17 8BY doub 23 n y C15 C16 8BY doub 24 n y C17 C16 8BY sing 25 n y C16 C19 8BY sing 26 n n C19 N20 8BY trip 27 n n C6 HC6 8BY sing 28 n n C9 HC9 8BY sing 29 n n C21 HC21 8BY sing 30 n n C18 HC18 8BY sing 31 n n C1 HC1B 8BY sing 32 n n C1 HC1A 8BY sing 33 n n C1 HC1C 8BY sing 34 n n C2 HC2 8BY sing 35 n n C3 HC3C 8BY sing 36 n n C3 HC3B 8BY sing 37 n n C3 HC3A 8BY sing 38 n n C10 HC10 8BY sing 39 n n C11 HC11 8BY sing 40 n n C14 HC14 8BY sing 41 n n C15 HC15 8BY sing 42 n n C17 HC17 8BY sing 43 n n N25 H25B 8BY sing 44 n n N25 H25A 8BY sing 45 n n # _atom_sites.entry_id 5UIR _atom_sites.fract_transf_matrix[1][1] 0.011403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8BY A 1 800 800 8BY PFE . D 2 8BY B 1 801 801 8BY PFE . E 3 HOH A 1 901 8 HOH HOH . E 3 HOH A 2 902 18 HOH HOH . E 3 HOH A 3 903 23 HOH HOH . E 3 HOH A 4 904 7 HOH HOH . E 3 HOH A 5 905 4 HOH HOH . E 3 HOH A 6 906 19 HOH HOH . E 3 HOH A 7 907 10 HOH HOH . E 3 HOH A 8 908 25 HOH HOH . E 3 HOH A 9 909 9 HOH HOH . E 3 HOH A 10 910 26 HOH HOH . E 3 HOH A 11 911 2 HOH HOH . E 3 HOH A 12 912 17 HOH HOH . E 3 HOH A 13 913 24 HOH HOH . E 3 HOH A 14 914 32 HOH HOH . E 3 HOH A 15 915 3 HOH HOH . E 3 HOH A 16 916 16 HOH HOH . E 3 HOH A 17 917 14 HOH HOH . E 3 HOH A 18 918 15 HOH HOH . E 3 HOH A 19 919 12 HOH HOH . F 3 HOH B 1 901 22 HOH HOH . F 3 HOH B 2 902 33 HOH HOH . F 3 HOH B 3 903 30 HOH HOH . F 3 HOH B 4 904 13 HOH HOH . F 3 HOH B 5 905 20 HOH HOH . F 3 HOH B 6 906 29 HOH HOH . F 3 HOH B 7 907 6 HOH HOH . F 3 HOH B 8 908 5 HOH HOH . F 3 HOH B 9 909 21 HOH HOH . F 3 HOH B 10 910 11 HOH HOH . F 3 HOH B 11 911 1 HOH HOH . F 3 HOH B 12 912 28 HOH HOH . F 3 HOH B 13 913 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 8BY . . . D 2 -23.67 38.797 -11.354 1 47.78 ? C7 8BY 801 B 1 HETATM 2 C C6 8BY . . . D 2 -25.085 38.968 -11.392 1 48.38 ? C6 8BY 801 B 1 HETATM 3 C C9 8BY . . . D 2 -21.631 38.63 -9.995 1 41.87 ? C9 8BY 801 B 1 HETATM 4 C C13 8BY . . . D 2 -23.385 38.684 -13.911 1 52.61 ? C13 8BY 801 B 1 HETATM 5 C C21 8BY . . . D 2 -23.852 38.725 -8.912 1 43.62 ? C21 8BY 801 B 1 HETATM 6 C C8 8BY . . . D 2 -23.046 38.69 -10.073 1 44.23 ? C8 8BY 801 B 1 HETATM 7 C C18 8BY . . . D 2 -22.893 39.481 -14.949 1 52.73 ? C18 8BY 801 B 1 HETATM 8 C C16 8BY . . . D 2 -24.264 38.327 -16.558 1 54.52 ? C16 8BY 801 B 1 HETATM 9 C C19 8BY . . . D 2 -24.776 38.201 -17.899 1 56.94 ? C19 8BY 801 B 1 HETATM 10 C C1 8BY . . . D 2 -29.395 38.773 -11.062 1 43.29 ? C1 8BY 801 B 1 HETATM 11 C C2 8BY . . . D 2 -28.007 39.221 -11.45 1 48.8 ? C2 8BY 801 B 1 HETATM 12 C C3 8BY . . . D 2 -27.969 40.646 -11.94 1 49.72 ? C3 8BY 801 B 1 HETATM 13 O O4 8BY . . . D 2 -27.2 39.132 -10.232 1 49.93 ? O4 8BY 801 B 1 HETATM 14 C C5 8BY . . . D 2 -25.826 38.998 -10.245 1 47.82 ? C5 8BY 801 B 1 HETATM 15 C C10 8BY . . . D 2 -20.869 38.693 -11.123 1 45.16 ? C10 8BY 801 B 1 HETATM 16 C C11 8BY . . . D 2 -21.462 38.776 -12.374 1 50.95 ? C11 8BY 801 B 1 HETATM 17 C C12 8BY . . . D 2 -22.835 38.798 -12.527 1 51.22 ? C12 8BY 801 B 1 HETATM 18 C C14 8BY . . . D 2 -24.335 37.708 -14.232 1 53.48 ? C14 8BY 801 B 1 HETATM 19 C C15 8BY . . . D 2 -24.767 37.525 -15.535 1 53.44 ? C15 8BY 801 B 1 HETATM 20 C C17 8BY . . . D 2 -23.319 39.305 -16.255 1 52.7 ? C17 8BY 801 B 1 HETATM 21 N N20 8BY . . . D 2 -25.212 38.097 -18.951 1 58.87 ? N20 8BY 801 B 1 HETATM 22 C C22 8BY . . . D 2 -25.216 38.872 -8.984 1 45.05 ? C22 8BY 801 B 1 HETATM 23 C C23 8BY . . . D 2 -25.936 38.736 -7.67 1 49.01 ? C23 8BY 801 B 1 HETATM 24 O O24 8BY . . . D 2 -25.318 38.919 -6.614 1 52.45 ? O24 8BY 801 B 1 HETATM 25 N N25 8BY . . . D 2 -27.254 38.526 -7.672 1 49.15 ? N25 8BY 801 B 1 HETATM 26 H HC6 8BY . . . D 2 -25.549 39.128 -12.363 1 48.38 ? HC6 8BY 801 B 1 HETATM 27 H HC9 8BY . . . D 2 -21.159 38.531 -9.019 1 41.34 ? HC9 8BY 801 B 1 HETATM 28 H HC21 8BY . . . D 2 -23.29 38.615 -7.986 1 43.39 ? HC21 8BY 801 B 1 HETATM 29 H HC18 8BY . . . D 2 -22.158 40.254 -14.73 1 52.64 ? HC18 8BY 801 B 1 HETATM 30 H HC1B 8BY . . . D 2 -29.516 37.697 -11.177 1 42.91 ? HC1B 8BY 801 B 1 HETATM 31 H HC1A 8BY . . . D 2 -30.156 39.248 -11.679 1 42.56 ? HC1A 8BY 801 B 1 HETATM 32 H HC1C 8BY . . . D 2 -29.627 38.984 -10.02 1 42.34 ? HC1C 8BY 801 B 1 HETATM 33 H HC2 8BY . . . D 2 -27.662 38.54 -12.227 1 49.51 ? HC2 8BY 801 B 1 HETATM 34 H HC3C 8BY . . . D 2 -28.411 41.342 -11.228 1 49.73 ? HC3C 8BY 801 B 1 HETATM 35 H HC3B 8BY . . . D 2 -28.525 40.762 -12.87 1 49.99 ? HC3B 8BY 801 B 1 HETATM 36 H HC3A 8BY . . . D 2 -26.958 41.003 -12.129 1 49.51 ? HC3A 8BY 801 B 1 HETATM 37 H HC10 8BY . . . D 2 -19.782 38.669 -11.052 1 44.93 ? HC10 8BY 801 B 1 HETATM 38 H HC11 8BY . . . D 2 -20.813 38.827 -13.247 1 51.05 ? HC11 8BY 801 B 1 HETATM 39 H HC14 8BY . . . D 2 -24.756 37.081 -13.449 1 53.59 ? HC14 8BY 801 B 1 HETATM 40 H HC15 8BY . . . D 2 -25.506 36.758 -15.763 1 53.23 ? HC15 8BY 801 B 1 HETATM 41 H HC17 8BY . . . D 2 -22.926 39.943 -17.045 1 52.72 ? HC17 8BY 801 B 1 HETATM 42 H H25B 8BY . . . D 2 -27.736 38.42 -6.785 1 48.79 ? H25B 8BY 801 B 1 HETATM 43 H H25A 8BY . . . D 2 -27.849 38.449 -8.491 1 49.38 ? H25A 8BY 801 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #