data_5UJ2 # _model_server_result.job_id 35Zp_numE2n9cTGj3ost2A _model_server_result.datetime_utc '2024-10-13 07:19:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 5UJ2 # _exptl.entry_id 5UJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.219 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-(4-aminoimidazo[2,1-f][1,2,4]triazin-7-yl)-1,4-anhydro-2-deoxy-2-fluoro-5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-2-methyl-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UJ2 _cell.length_a 141.76 _cell.length_b 141.76 _cell.length_c 91.11 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3' U 8 P U 8 1_555 D MN MN . P MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 D MN MN . P MN 601 1_555 E O2A 8B4 . P 8B4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 D MN MN . P MN 601 1_555 I O HOH . P HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc4 D MN MN . P MN 601 1_555 C OD1 ASP 222 A ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 D MN MN . P MN 601 1_555 C OD1 ASP 320 A ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc6 D MN MN . P MN 601 1_555 C OD1 ASP 321 A ASP 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc7 E O3B 8B4 . P 8B4 602 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc8 E O2A 8B4 . P 8B4 602 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc9 I O HOH . P HOH 701 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc10 C OD2 ASP 222 A ASP 220 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc11 C O THR 223 A THR 221 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc12 C OE2 GLU 239 A GLU 237 1_555 G MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc13 C ND1 HIS 256 A HIS 254 1_555 G MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc14 C OD2 ASP 320 A ASP 318 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? hydrog WATSON-CRICK hydrog1 A N1 A 3 T A 3 1_555 B N3 U 8 P U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 A 3 T A 3 1_555 B O4 U 8 P U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 A 4 T A 4 1_555 B N3 U 7 P U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N6 A 4 T A 4 1_555 B O4 U 7 P U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 A 5 T A 5 1_555 B N3 U 6 P U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N6 A 5 T A 5 1_555 B O4 U 6 P U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 U 6 T U 6 1_555 B N1 A 5 P A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 U 6 T U 6 1_555 B N6 A 5 P A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 7 T U 7 1_555 B N1 A 4 P A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 7 T U 7 1_555 B N6 A 4 P A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C11 H16 F N5 O9 P2' _chem_comp.formula_weight 443.219 _chem_comp.id 8B4 _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-(4-aminoimidazo[2,1-f][1,2,4]triazin-7-yl)-1,4-anhydro-2-deoxy-2-fluoro-5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-2-methyl-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3B PB 8B4 doub 1 n n O2A PA 8B4 doub 2 n n O1B PB 8B4 sing 3 n n PB O2B 8B4 sing 4 n n PB O3A 8B4 sing 5 n n O3' C3' 8B4 sing 6 n n C5' C4' 8B4 sing 7 n n C5' O5' 8B4 sing 8 n n PA O3A 8B4 sing 9 n n PA O5' 8B4 sing 10 n n PA O1A 8B4 sing 11 n n C4' C3' 8B4 sing 12 n n C4' O4' 8B4 sing 13 n n C3' C2' 8B4 sing 14 n n F2' C2' 8B4 sing 15 n n O4' C1' 8B4 sing 16 n n C2' C2M 8B4 sing 17 n n C2' C1' 8B4 sing 18 n n C1' C9 8B4 sing 19 n n C9 C8 8B4 doub 20 n y C9 N4 8B4 sing 21 n y C8 N7 8B4 sing 22 n y N4 N3 8B4 sing 23 n y N4 C5 8B4 sing 24 n y N7 C5 8B4 doub 25 n y N3 C2 8B4 doub 26 n y C5 C6 8B4 sing 27 n y C2 N1 8B4 sing 28 n y C6 N1 8B4 doub 29 n y C6 N6 8B4 sing 30 n n C8 H1 8B4 sing 31 n n C2M H2 8B4 sing 32 n n C2M H3 8B4 sing 33 n n C2M H4 8B4 sing 34 n n C3' H5 8B4 sing 35 n n O3' H6 8B4 sing 36 n n C1' H7 8B4 sing 37 n n C4' H8 8B4 sing 38 n n C5' H9 8B4 sing 39 n n C5' H10 8B4 sing 40 n n O1A H11 8B4 sing 41 n n O1B H12 8B4 sing 42 n n O2B H13 8B4 sing 43 n n N6 H14 8B4 sing 44 n n N6 H15 8B4 sing 45 n n C2 H16 8B4 sing 46 n n # _atom_sites.entry_id 5UJ2 _atom_sites.fract_transf_matrix[1][1] 0.007054 _atom_sites.fract_transf_matrix[1][2] 0.004073 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MN P 1 601 601 MN MN . E 4 8B4 P 1 602 605 8B4 8B4 . F 3 MN A 1 601 602 MN MN . G 3 MN A 1 602 603 MN MN . H 5 CL A 1 603 604 CL CL . I 6 HOH P 1 701 702 HOH HOH . I 6 HOH P 2 702 705 HOH HOH . J 6 HOH A 1 701 701 HOH HOH . J 6 HOH A 2 702 703 HOH HOH . J 6 HOH A 3 703 704 HOH HOH . J 6 HOH A 4 704 706 HOH HOH . J 6 HOH A 5 705 707 HOH HOH . J 6 HOH A 6 706 708 HOH HOH . J 6 HOH A 7 707 709 HOH HOH . J 6 HOH A 8 708 710 HOH HOH . J 6 HOH A 9 709 711 HOH HOH . J 6 HOH A 10 710 712 HOH HOH . J 6 HOH A 11 711 713 HOH HOH . J 6 HOH A 12 712 714 HOH HOH . J 6 HOH A 13 713 715 HOH HOH . J 6 HOH A 14 714 716 HOH HOH . J 6 HOH A 15 715 717 HOH HOH . J 6 HOH A 16 716 718 HOH HOH . J 6 HOH A 17 717 719 HOH HOH . J 6 HOH A 18 718 720 HOH HOH . J 6 HOH A 19 719 721 HOH HOH . J 6 HOH A 20 720 722 HOH HOH . J 6 HOH A 21 721 723 HOH HOH . J 6 HOH A 22 722 724 HOH HOH . J 6 HOH A 23 723 725 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 8B4 . . . E 4 41.479 -46.13 7.501 1 57.61 ? C8 8B4 602 P 1 HETATM 2 C C6 8B4 . . . E 4 39.87 -45.632 10.689 1 57.55 ? C6 8B4 602 P 1 HETATM 3 C C5 8B4 . . . E 4 40.39 -45.89 9.415 1 58.63 ? C5 8B4 602 P 1 HETATM 4 F F2' 8B4 . . . E 4 38.149 -46.69 4.557 1 59.3 ? F2' 8B4 602 P 1 HETATM 5 C C2' 8B4 . . . E 4 39.089 -46.155 5.308 1 55.23 ? C2' 8B4 602 P 1 HETATM 6 C C2M 8B4 . . . E 4 38.415 -45.009 6.066 1 54.24 ? C2M 8B4 602 P 1 HETATM 7 C C3' 8B4 . . . E 4 40.226 -45.688 4.42 1 54.09 ? C3' 8B4 602 P 1 HETATM 8 O O3' 8B4 . . . E 4 39.789 -44.942 3.276 1 53.53 ? O3' 8B4 602 P 1 HETATM 9 C C1' 8B4 . . . E 4 39.746 -47.288 6.119 1 55.51 ? C1' 8B4 602 P 1 HETATM 10 O O4' 8B4 . . . E 4 40.777 -47.805 5.267 1 53.12 ? O4' 8B4 602 P 1 HETATM 11 C C4' 8B4 . . . E 4 40.829 -47.035 4.053 1 55.41 ? C4' 8B4 602 P 1 HETATM 12 C C5' 8B4 . . . E 4 42.218 -46.984 3.388 1 57.42 ? C5' 8B4 602 P 1 HETATM 13 O O5' 8B4 . . . E 4 43.274 -46.556 4.258 1 56.19 ? O5' 8B4 602 P 1 HETATM 14 P PA 8B4 . . . E 4 44.312 -45.409 3.841 1 46.01 ? PA 8B4 602 P 1 HETATM 15 O O1A 8B4 . . . E 4 45.193 -45.324 5.038 1 48.65 ? O1A 8B4 602 P 1 HETATM 16 O O3A 8B4 . . . E 4 43.418 -44.061 3.855 1 47.92 ? O3A 8B4 602 P 1 HETATM 17 P PB 8B4 . . . E 4 42.748 -43.316 2.582 1 50.12 ? PB 8B4 602 P 1 HETATM 18 O O1B 8B4 . . . E 4 43.437 -41.963 2.488 1 45.58 ? O1B 8B4 602 P 1 HETATM 19 O O2B 8B4 . . . E 4 41.307 -43.17 3.02 1 51.73 ? O2B 8B4 602 P 1 HETATM 20 O O3B 8B4 . . . E 4 42.903 -44.249 1.399 1 46.21 ? O3B 8B4 602 P 1 HETATM 21 O O2A 8B4 . . . E 4 44.881 -45.724 2.482 1 45.77 ? O2A 8B4 602 P 1 HETATM 22 C C9 8B4 . . . E 4 40.216 -46.699 7.401 1 57.57 ? C9 8B4 602 P 1 HETATM 23 N N7 8B4 . . . E 4 41.572 -45.644 8.775 1 58.47 ? N7 8B4 602 P 1 HETATM 24 N N6 8B4 . . . E 4 40.579 -44.983 11.636 1 56.85 ? N6 8B4 602 P 1 HETATM 25 N N1 8B4 . . . E 4 38.617 -46.027 10.997 1 57.27 ? N1 8B4 602 P 1 HETATM 26 C C2 8B4 . . . E 4 37.853 -46.663 10.09 1 59.82 ? C2 8B4 602 P 1 HETATM 27 N N3 8B4 . . . E 4 38.308 -46.93 8.856 1 55.99 ? N3 8B4 602 P 1 HETATM 28 N N4 8B4 . . . E 4 39.596 -46.522 8.553 1 56.95 ? N4 8B4 602 P 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 523 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #