data_5UJ4 # _model_server_result.job_id DMitaCG5z3sYu9G04ClapA _model_server_result.datetime_utc '2024-11-02 12:27:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5UJ4 # _exptl.entry_id 5UJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.331 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UJ4 _cell.length_a 57.14 _cell.length_b 59.13 _cell.length_c 77.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 65 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 234 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 238 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H17 N O6 S' _chem_comp.formula_weight 303.331 _chem_comp.id SFR _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'FAROPENEM, unbound, hydrolyzed form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O62 C61 SFR sing 303 n n C62 C61 SFR sing 304 n n C61 C6 SFR sing 305 n n S1 C2 SFR sing 306 n n S1 C5 SFR sing 307 n n C15 C14 SFR sing 308 n n C15 C16 SFR sing 309 n n C14 C2 SFR sing 310 n n C14 O18 SFR sing 311 n n C2 C3 SFR doub 312 n n C6 C5 SFR sing 313 n n C6 C7 SFR sing 314 n n C16 C17 SFR sing 315 n n C5 N4 SFR sing 316 n n C17 O18 SFR sing 317 n n C3 N4 SFR sing 318 n n C3 C31 SFR sing 319 n n C7 O71 SFR doub 320 n n C7 O72 SFR sing 321 n n O32 C31 SFR doub 322 n n C31 O31 SFR sing 323 n n O72 H1 SFR sing 324 n n C6 H2 SFR sing 325 n n N4 H3 SFR sing 326 n n C5 H5 SFR sing 327 n n C61 H8 SFR sing 328 n n O62 H9 SFR sing 329 n n C62 H10 SFR sing 330 n n C62 H11 SFR sing 331 n n C62 H12 SFR sing 332 n n C14 H13 SFR sing 333 n n C15 H14 SFR sing 334 n n C15 H15 SFR sing 335 n n C16 H16 SFR sing 336 n n C16 H17 SFR sing 337 n n C17 H18 SFR sing 338 n n C17 H19 SFR sing 339 n n O31 H20 SFR sing 340 n n # _atom_sites.entry_id 5UJ4 _atom_sites.fract_transf_matrix[1][1] 0.017501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SFR A 1 301 301 SFR SFR . C 3 GOL A 1 302 302 GOL GOL . D 4 HOH A 1 401 119 HOH HOH . D 4 HOH A 2 402 98 HOH HOH . D 4 HOH A 3 403 35 HOH HOH . D 4 HOH A 4 404 13 HOH HOH . D 4 HOH A 5 405 102 HOH HOH . D 4 HOH A 6 406 44 HOH HOH . D 4 HOH A 7 407 190 HOH HOH . D 4 HOH A 8 408 6 HOH HOH . D 4 HOH A 9 409 153 HOH HOH . D 4 HOH A 10 410 29 HOH HOH . D 4 HOH A 11 411 52 HOH HOH . D 4 HOH A 12 412 178 HOH HOH . D 4 HOH A 13 413 56 HOH HOH . D 4 HOH A 14 414 82 HOH HOH . D 4 HOH A 15 415 28 HOH HOH . D 4 HOH A 16 416 173 HOH HOH . D 4 HOH A 17 417 168 HOH HOH . D 4 HOH A 18 418 57 HOH HOH . D 4 HOH A 19 419 175 HOH HOH . D 4 HOH A 20 420 30 HOH HOH . D 4 HOH A 21 421 114 HOH HOH . D 4 HOH A 22 422 135 HOH HOH . D 4 HOH A 23 423 4 HOH HOH . D 4 HOH A 24 424 31 HOH HOH . D 4 HOH A 25 425 85 HOH HOH . D 4 HOH A 26 426 75 HOH HOH . D 4 HOH A 27 427 25 HOH HOH . D 4 HOH A 28 428 73 HOH HOH . D 4 HOH A 29 429 5 HOH HOH . D 4 HOH A 30 430 105 HOH HOH . D 4 HOH A 31 431 76 HOH HOH . D 4 HOH A 32 432 191 HOH HOH . D 4 HOH A 33 433 160 HOH HOH . D 4 HOH A 34 434 170 HOH HOH . D 4 HOH A 35 435 87 HOH HOH . D 4 HOH A 36 436 139 HOH HOH . D 4 HOH A 37 437 210 HOH HOH . D 4 HOH A 38 438 138 HOH HOH . D 4 HOH A 39 439 9 HOH HOH . D 4 HOH A 40 440 209 HOH HOH . D 4 HOH A 41 441 145 HOH HOH . D 4 HOH A 42 442 208 HOH HOH . D 4 HOH A 43 443 24 HOH HOH . D 4 HOH A 44 444 19 HOH HOH . D 4 HOH A 45 445 14 HOH HOH . D 4 HOH A 46 446 17 HOH HOH . D 4 HOH A 47 447 203 HOH HOH . D 4 HOH A 48 448 39 HOH HOH . D 4 HOH A 49 449 34 HOH HOH . D 4 HOH A 50 450 185 HOH HOH . D 4 HOH A 51 451 46 HOH HOH . D 4 HOH A 52 452 116 HOH HOH . D 4 HOH A 53 453 192 HOH HOH . D 4 HOH A 54 454 60 HOH HOH . D 4 HOH A 55 455 7 HOH HOH . D 4 HOH A 56 456 219 HOH HOH . D 4 HOH A 57 457 40 HOH HOH . D 4 HOH A 58 458 181 HOH HOH . D 4 HOH A 59 459 1 HOH HOH . D 4 HOH A 60 460 189 HOH HOH . D 4 HOH A 61 461 36 HOH HOH . D 4 HOH A 62 462 100 HOH HOH . D 4 HOH A 63 463 164 HOH HOH . D 4 HOH A 64 464 47 HOH HOH . D 4 HOH A 65 465 77 HOH HOH . D 4 HOH A 66 466 37 HOH HOH . D 4 HOH A 67 467 129 HOH HOH . D 4 HOH A 68 468 207 HOH HOH . D 4 HOH A 69 469 38 HOH HOH . D 4 HOH A 70 470 2 HOH HOH . D 4 HOH A 71 471 97 HOH HOH . D 4 HOH A 72 472 16 HOH HOH . D 4 HOH A 73 473 142 HOH HOH . D 4 HOH A 74 474 88 HOH HOH . D 4 HOH A 75 475 23 HOH HOH . D 4 HOH A 76 476 128 HOH HOH . D 4 HOH A 77 477 10 HOH HOH . D 4 HOH A 78 478 45 HOH HOH . D 4 HOH A 79 479 74 HOH HOH . D 4 HOH A 80 480 27 HOH HOH . D 4 HOH A 81 481 80 HOH HOH . D 4 HOH A 82 482 220 HOH HOH . D 4 HOH A 83 483 115 HOH HOH . D 4 HOH A 84 484 126 HOH HOH . D 4 HOH A 85 485 8 HOH HOH . D 4 HOH A 86 486 182 HOH HOH . D 4 HOH A 87 487 20 HOH HOH . D 4 HOH A 88 488 48 HOH HOH . D 4 HOH A 89 489 108 HOH HOH . D 4 HOH A 90 490 215 HOH HOH . D 4 HOH A 91 491 21 HOH HOH . D 4 HOH A 92 492 93 HOH HOH . D 4 HOH A 93 493 58 HOH HOH . D 4 HOH A 94 494 12 HOH HOH . D 4 HOH A 95 495 140 HOH HOH . D 4 HOH A 96 496 26 HOH HOH . D 4 HOH A 97 497 104 HOH HOH . D 4 HOH A 98 498 83 HOH HOH . D 4 HOH A 99 499 218 HOH HOH . D 4 HOH A 100 500 112 HOH HOH . D 4 HOH A 101 501 66 HOH HOH . D 4 HOH A 102 502 55 HOH HOH . D 4 HOH A 103 503 146 HOH HOH . D 4 HOH A 104 504 106 HOH HOH . D 4 HOH A 105 505 63 HOH HOH . D 4 HOH A 106 506 71 HOH HOH . D 4 HOH A 107 507 117 HOH HOH . D 4 HOH A 108 508 18 HOH HOH . D 4 HOH A 109 509 90 HOH HOH . D 4 HOH A 110 510 99 HOH HOH . D 4 HOH A 111 511 22 HOH HOH . D 4 HOH A 112 512 33 HOH HOH . D 4 HOH A 113 513 43 HOH HOH . D 4 HOH A 114 514 130 HOH HOH . D 4 HOH A 115 515 86 HOH HOH . D 4 HOH A 116 516 151 HOH HOH . D 4 HOH A 117 517 49 HOH HOH . D 4 HOH A 118 518 144 HOH HOH . D 4 HOH A 119 519 127 HOH HOH . D 4 HOH A 120 520 141 HOH HOH . D 4 HOH A 121 521 95 HOH HOH . D 4 HOH A 122 522 84 HOH HOH . D 4 HOH A 123 523 205 HOH HOH . D 4 HOH A 124 524 193 HOH HOH . D 4 HOH A 125 525 176 HOH HOH . D 4 HOH A 126 526 59 HOH HOH . D 4 HOH A 127 527 202 HOH HOH . D 4 HOH A 128 528 154 HOH HOH . D 4 HOH A 129 529 50 HOH HOH . D 4 HOH A 130 530 180 HOH HOH . D 4 HOH A 131 531 64 HOH HOH . D 4 HOH A 132 532 32 HOH HOH . D 4 HOH A 133 533 103 HOH HOH . D 4 HOH A 134 534 3 HOH HOH . D 4 HOH A 135 535 187 HOH HOH . D 4 HOH A 136 536 67 HOH HOH . D 4 HOH A 137 537 70 HOH HOH . D 4 HOH A 138 538 122 HOH HOH . D 4 HOH A 139 539 132 HOH HOH . D 4 HOH A 140 540 184 HOH HOH . D 4 HOH A 141 541 136 HOH HOH . D 4 HOH A 142 542 41 HOH HOH . D 4 HOH A 143 543 148 HOH HOH . D 4 HOH A 144 544 157 HOH HOH . D 4 HOH A 145 545 62 HOH HOH . D 4 HOH A 146 546 92 HOH HOH . D 4 HOH A 147 547 156 HOH HOH . D 4 HOH A 148 548 15 HOH HOH . D 4 HOH A 149 549 69 HOH HOH . D 4 HOH A 150 550 89 HOH HOH . D 4 HOH A 151 551 111 HOH HOH . D 4 HOH A 152 552 118 HOH HOH . D 4 HOH A 153 553 54 HOH HOH . D 4 HOH A 154 554 96 HOH HOH . D 4 HOH A 155 555 107 HOH HOH . D 4 HOH A 156 556 78 HOH HOH . D 4 HOH A 157 557 165 HOH HOH . D 4 HOH A 158 558 53 HOH HOH . D 4 HOH A 159 559 183 HOH HOH . D 4 HOH A 160 560 61 HOH HOH . D 4 HOH A 161 561 42 HOH HOH . D 4 HOH A 162 562 81 HOH HOH . D 4 HOH A 163 563 213 HOH HOH . D 4 HOH A 164 564 162 HOH HOH . D 4 HOH A 165 565 124 HOH HOH . D 4 HOH A 166 566 94 HOH HOH . D 4 HOH A 167 567 221 HOH HOH . D 4 HOH A 168 568 216 HOH HOH . D 4 HOH A 169 569 163 HOH HOH . D 4 HOH A 170 570 172 HOH HOH . D 4 HOH A 171 571 196 HOH HOH . D 4 HOH A 172 572 166 HOH HOH . D 4 HOH A 173 573 51 HOH HOH . D 4 HOH A 174 574 174 HOH HOH . D 4 HOH A 175 575 65 HOH HOH . D 4 HOH A 176 576 150 HOH HOH . D 4 HOH A 177 577 169 HOH HOH . D 4 HOH A 178 578 201 HOH HOH . D 4 HOH A 179 579 125 HOH HOH . D 4 HOH A 180 580 171 HOH HOH . D 4 HOH A 181 581 137 HOH HOH . D 4 HOH A 182 582 167 HOH HOH . D 4 HOH A 183 583 212 HOH HOH . D 4 HOH A 184 584 204 HOH HOH . D 4 HOH A 185 585 155 HOH HOH . D 4 HOH A 186 586 217 HOH HOH . D 4 HOH A 187 587 101 HOH HOH . D 4 HOH A 188 588 121 HOH HOH . D 4 HOH A 189 589 186 HOH HOH . D 4 HOH A 190 590 158 HOH HOH . D 4 HOH A 191 591 152 HOH HOH . D 4 HOH A 192 592 195 HOH HOH . D 4 HOH A 193 593 198 HOH HOH . D 4 HOH A 194 594 179 HOH HOH . D 4 HOH A 195 595 214 HOH HOH . D 4 HOH A 196 596 110 HOH HOH . D 4 HOH A 197 597 188 HOH HOH . D 4 HOH A 198 598 131 HOH HOH . D 4 HOH A 199 599 159 HOH HOH . D 4 HOH A 200 600 223 HOH HOH . D 4 HOH A 201 601 134 HOH HOH . D 4 HOH A 202 602 113 HOH HOH . D 4 HOH A 203 603 72 HOH HOH . D 4 HOH A 204 604 133 HOH HOH . D 4 HOH A 205 605 143 HOH HOH . D 4 HOH A 206 606 91 HOH HOH . D 4 HOH A 207 607 11 HOH HOH . D 4 HOH A 208 608 123 HOH HOH . D 4 HOH A 209 609 194 HOH HOH . D 4 HOH A 210 610 79 HOH HOH . D 4 HOH A 211 611 200 HOH HOH . D 4 HOH A 212 612 147 HOH HOH . D 4 HOH A 213 613 68 HOH HOH . D 4 HOH A 214 614 222 HOH HOH . D 4 HOH A 215 615 197 HOH HOH . D 4 HOH A 216 616 120 HOH HOH . D 4 HOH A 217 617 109 HOH HOH . D 4 HOH A 218 618 161 HOH HOH . D 4 HOH A 219 619 177 HOH HOH . D 4 HOH A 220 620 199 HOH HOH . D 4 HOH A 221 621 211 HOH HOH . D 4 HOH A 222 622 149 HOH HOH . D 4 HOH A 223 623 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O72 SFR . . . B 2 22.178 13.71 10.416 0.84 36.34 -1 O72 SFR 301 A 1 HETATM 2 C C7 SFR . . . B 2 22.725 14.635 9.761 0.84 36.21 ? C7 SFR 301 A 1 HETATM 3 C C6 SFR . . . B 2 22.128 15.259 8.463 0.84 35.71 ? C6 SFR 301 A 1 HETATM 4 N N4 SFR . . . B 2 21.056 16.782 9.934 0.84 35.54 ? N4 SFR 301 A 1 HETATM 5 C C5 SFR . . . B 2 21.913 16.663 8.741 0.84 36.07 ? C5 SFR 301 A 1 HETATM 6 C C3 SFR . . . B 2 19.863 17.159 9.651 0.84 32.78 ? C3 SFR 301 A 1 HETATM 7 C C2 SFR . . . B 2 19.806 18.068 8.419 0.84 38.1 ? C2 SFR 301 A 1 HETATM 8 S S1 SFR . . . B 2 21.177 17.478 7.391 0.84 38.22 ? S1 SFR 301 A 1 HETATM 9 C C31 SFR . . . B 2 18.817 17.375 10.727 0.84 26.74 ? C31 SFR 301 A 1 HETATM 10 O O71 SFR . . . B 2 23.823 15.135 10.124 0.84 36.04 ? O71 SFR 301 A 1 HETATM 11 C C61 SFR . . . B 2 23.158 15.049 7.315 0.84 36.69 ? C61 SFR 301 A 1 HETATM 12 O O62 SFR . . . B 2 22.592 15.378 6.09 0.84 37.27 ? O62 SFR 301 A 1 HETATM 13 C C62 SFR . . . B 2 23.647 13.612 7.257 0.84 37.22 ? C62 SFR 301 A 1 HETATM 14 C C14 SFR . . . B 2 19.609 19.58 8.635 0.84 43.56 ? C14 SFR 301 A 1 HETATM 15 C C15 SFR . . . B 2 20.764 20.134 9.486 0.84 45.48 ? C15 SFR 301 A 1 HETATM 16 C C16 SFR . . . B 2 21.132 21.298 9.022 0.84 46.47 ? C16 SFR 301 A 1 HETATM 17 C C17 SFR . . . B 2 20.246 21.577 7.698 0.84 46.88 ? C17 SFR 301 A 1 HETATM 18 O O18 SFR . . . B 2 19.713 20.29 7.399 0.84 46.03 ? O18 SFR 301 A 1 HETATM 19 O O32 SFR . . . B 2 17.625 17.461 10.371 0.84 23.34 ? O32 SFR 301 A 1 HETATM 20 O O31 SFR . . . B 2 19.132 17.476 11.936 0.84 26.32 -1 O31 SFR 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #