data_5UJ7 # _model_server_result.job_id 2yRYNTEiCxJ4HXUp8WrH0Q _model_server_result.datetime_utc '2025-07-06 18:30:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 5UJ7 # _exptl.entry_id 5UJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.25 _cell.angle_gamma 90 _cell.entry_id 5UJ7 _cell.length_a 120.887 _cell.length_b 81.141 _cell.length_c 151.947 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L 1 1 D,E,F,M,N,O,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 K N N ? 4 M N N ? 4 O N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 150 A ASP 620 1_555 H MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc2 A OD2 ASP 150 A ASP 620 1_555 H MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc3 G O1B ATP . A ATP 900 1_555 H MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 B OG1 THR 74 C THR 74 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc5 I O3G ATP . C ATP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc6 I O3B ATP . C ATP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc7 C O PHE 22 E PHE 22 1_555 L K K . E K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc8 C O GLU 24 E GLU 24 1_555 L K K . E K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc9 C OG1 THR 119 E THR 119 1_555 L K K . E K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc10 C OH TYR 121 E TYR 121 1_555 L K K . E K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.243 ? metalc ? metalc11 D OG1 THR 71 B THR 541 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc12 D OD1 ASP 150 B ASP 620 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc13 D OD2 ASP 150 B ASP 620 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc14 M O2G ATP . B ATP 901 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc15 M O3B ATP . B ATP 901 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc16 E OG1 THR 74 D THR 74 1_555 P MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc17 O O3G ATP . D ATP 501 1_555 P MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc18 O O3B ATP . D ATP 501 1_555 P MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc19 F O PHE 22 F PHE 22 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc20 F O GLU 24 F GLU 24 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc21 F O HIS 27 F HIS 27 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5UJ7 _atom_sites.fract_transf_matrix[1][1] 0.008272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001053 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 900 900 ATP ATP . H 5 MG A 1 901 901 MG MG . I 4 ATP C 1 501 902 ATP ATP . J 5 MG C 1 502 903 MG MG . K 4 ATP E 1 301 904 ATP ATP . L 6 K E 1 302 905 K K . M 4 ATP B 1 901 906 ATP ATP . N 5 MG B 1 902 907 MG MG . O 4 ATP D 1 501 908 ATP ATP . P 5 MG D 1 502 909 MG MG . Q 4 ATP F 1 301 910 ATP ATP . R 6 K F 1 302 911 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 4 90.471 48.349 -39.84 1 153.89 ? PG ATP 301 E 1 HETATM 2 O O1G ATP . . . K 4 89.337 49.342 -39.934 1 151.29 ? O1G ATP 301 E 1 HETATM 3 O O2G ATP . . . K 4 90.554 47.612 -38.524 1 153.2 -1 O2G ATP 301 E 1 HETATM 4 O O3G ATP . . . K 4 90.681 47.485 -41.063 1 151.5 ? O3G ATP 301 E 1 HETATM 5 P PB ATP . . . K 4 93.138 48.791 -39.149 1 144.64 ? PB ATP 301 E 1 HETATM 6 O O1B ATP . . . K 4 93.853 47.79 -40.033 1 145.19 -1 O1B ATP 301 E 1 HETATM 7 O O2B ATP . . . K 4 92.931 48.541 -37.676 1 146.18 ? O2B ATP 301 E 1 HETATM 8 O O3B ATP . . . K 4 91.77 49.281 -39.819 1 146.74 ? O3B ATP 301 E 1 HETATM 9 P PA ATP . . . K 4 94.583 50.829 -38.055 1 133.21 ? PA ATP 301 E 1 HETATM 10 O O1A ATP . . . K 4 95.895 50.115 -37.848 1 133.24 -1 O1A ATP 301 E 1 HETATM 11 O O2A ATP . . . K 4 93.623 51.037 -36.907 1 129.73 ? O2A ATP 301 E 1 HETATM 12 O O3A ATP . . . K 4 93.858 50.192 -39.311 1 137.23 ? O3A ATP 301 E 1 HETATM 13 O O5' ATP . . . K 4 94.893 52.204 -38.782 1 126.57 ? O5' ATP 301 E 1 HETATM 14 C C5' ATP . . . K 4 96.022 52.897 -38.329 1 125.17 ? C5' ATP 301 E 1 HETATM 15 C C4' ATP . . . K 4 95.547 54.271 -37.967 1 123.07 ? C4' ATP 301 E 1 HETATM 16 O O4' ATP . . . K 4 95.035 54.209 -36.64 1 121.41 ? O4' ATP 301 E 1 HETATM 17 C C3' ATP . . . K 4 96.722 55.216 -37.991 1 123.02 ? C3' ATP 301 E 1 HETATM 18 O O3' ATP . . . K 4 96.829 55.919 -39.236 1 122.75 ? O3' ATP 301 E 1 HETATM 19 C C2' ATP . . . K 4 96.428 56.099 -36.81 1 123.98 ? C2' ATP 301 E 1 HETATM 20 O O2' ATP . . . K 4 95.546 57.14 -37.235 1 126.88 ? O2' ATP 301 E 1 HETATM 21 C C1' ATP . . . K 4 95.663 55.206 -35.841 1 121.38 ? C1' ATP 301 E 1 HETATM 22 N N9 ATP . . . K 4 96.507 54.506 -34.83 1 120.38 ? N9 ATP 301 E 1 HETATM 23 C C8 ATP . . . K 4 96.252 53.265 -34.361 1 119.82 ? C8 ATP 301 E 1 HETATM 24 N N7 ATP . . . K 4 97.176 52.884 -33.444 1 118.88 ? N7 ATP 301 E 1 HETATM 25 C C5 ATP . . . K 4 98.052 53.891 -33.315 1 117.45 ? C5 ATP 301 E 1 HETATM 26 C C6 ATP . . . K 4 99.269 54.142 -32.516 1 113.73 ? C6 ATP 301 E 1 HETATM 27 N N6 ATP . . . K 4 99.746 53.22 -31.654 1 111.97 ? N6 ATP 301 E 1 HETATM 28 N N1 ATP . . . K 4 99.896 55.324 -32.67 1 114.54 ? N1 ATP 301 E 1 HETATM 29 C C2 ATP . . . K 4 99.446 56.268 -33.516 1 116.67 ? C2 ATP 301 E 1 HETATM 30 N N3 ATP . . . K 4 98.345 56.101 -34.268 1 118.96 ? N3 ATP 301 E 1 HETATM 31 C C4 ATP . . . K 4 97.61 54.96 -34.223 1 119.32 ? C4 ATP 301 E 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #