data_5UJ7
#
_model_server_result.job_id            gAx_MhnpDhX7nNeH5diqEQ 
_model_server_result.datetime_utc      '2025-04-20 23:13:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5uj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":301}' 
#
_entry.id    5UJ7 
#
_exptl.entry_id    5UJ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.25 
_cell.angle_gamma         90 
_cell.entry_id            5UJ7 
_cell.length_a            120.887 
_cell.length_b            81.141 
_cell.length_c            151.947 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L 1 1 
D,E,F,M,N,O,P,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
? 4 K N N 
? 4 M N N 
? 4 O N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 150 A ASP 620 1_555 H MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc2 A OD2 ASP 150 A ASP 620 1_555 H MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc3 G O1B ATP . A ATP 900 1_555 H MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc4 B OG1 THR 74 C THR 74 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc5 I O3G ATP . C ATP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc6 I O3B ATP . C ATP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc7 C O PHE 22 E PHE 22 1_555 L K K . E K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc8 C O GLU 24 E GLU 24 1_555 L K K . E K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? 
metalc ? metalc9 C OG1 THR 119 E THR 119 1_555 L K K . E K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc10 C OH TYR 121 E TYR 121 1_555 L K K . E K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.243 ? 
metalc ? metalc11 D OG1 THR 71 B THR 541 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc12 D OD1 ASP 150 B ASP 620 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? 
metalc ? metalc13 D OD2 ASP 150 B ASP 620 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc14 M O2G ATP . B ATP 901 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc15 M O3B ATP . B ATP 901 1_555 N MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc16 E OG1 THR 74 D THR 74 1_555 P MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? 
metalc ? metalc17 O O3G ATP . D ATP 501 1_555 P MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc18 O O3B ATP . D ATP 501 1_555 P MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? 
metalc ? metalc19 F O PHE 22 F PHE 22 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc20 F O GLU 24 F GLU 24 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc21 F O HIS 27 F HIS 27 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     5UJ7 
_atom_sites.fract_transf_matrix[1][1]    0.008272 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001053 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012324 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 ATP A 1 900 900 ATP ATP . 
H 5 MG A 1 901 901 MG MG . 
I 4 ATP C 1 501 902 ATP ATP . 
J 5 MG C 1 502 903 MG MG . 
K 4 ATP E 1 301 904 ATP ATP . 
L 6 K E 1 302 905 K K . 
M 4 ATP B 1 901 906 ATP ATP . 
N 5 MG B 1 902 907 MG MG . 
O 4 ATP D 1 501 908 ATP ATP . 
P 5 MG D 1 502 909 MG MG . 
Q 4 ATP F 1 301 910 ATP ATP . 
R 6 K F 1 302 911 K K . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 4 156.229 33.816 -21.282 1 170.08 ? PG ATP 301 F 1 
HETATM 2 O O1G ATP . . . Q 4 156.174 34.808 -20.145 1 171.39 ? O1G ATP 301 F 1 
HETATM 3 O O2G ATP . . . Q 4 157.541 33.083 -21.417 1 171.35 -1 O2G ATP 301 F 1 
HETATM 4 O O3G ATP . . . Q 4 155.001 32.946 -21.423 1 171.53 ? O3G ATP 301 F 1 
HETATM 5 P PB ATP . . . Q 4 156.802 34.27 -23.983 1 160.45 ? PB ATP 301 F 1 
HETATM 6 O O1B ATP . . . Q 4 155.893 33.258 -24.648 1 161.17 -1 O1B ATP 301 F 1 
HETATM 7 O O2B ATP . . . Q 4 158.281 34.025 -23.838 1 165.88 ? O2B ATP 301 F 1 
HETATM 8 O O3B ATP . . . Q 4 156.189 34.748 -22.583 1 165.44 ? O3B ATP 301 F 1 
HETATM 9 P PA ATP . . . Q 4 157.805 36.348 -25.472 1 146.42 ? PA ATP 301 F 1 
HETATM 10 O O1A ATP . . . Q 4 157.94 35.661 -26.808 1 145.18 -1 O1A ATP 301 F 1 
HETATM 11 O O2A ATP . . . Q 4 158.976 36.543 -24.538 1 145.41 ? O2A ATP 301 F 1 
HETATM 12 O O3A ATP . . . Q 4 156.596 35.678 -24.687 1 153.94 ? O3A ATP 301 F 1 
HETATM 13 O O5' ATP . . . Q 4 157.107 37.755 -25.737 1 142.13 ? O5' ATP 301 F 1 
HETATM 14 C C5' ATP . . . Q 4 157.561 38.489 -26.847 1 138.11 ? C5' ATP 301 F 1 
HETATM 15 C C4' ATP . . . Q 4 157.925 39.88 -26.39 1 134.34 ? C4' ATP 301 F 1 
HETATM 16 O O4' ATP . . . Q 4 159.256 39.882 -25.877 1 132.31 ? O4' ATP 301 F 1 
HETATM 17 C C3' ATP . . . Q 4 157.891 40.782 -27.597 1 134.02 ? C3' ATP 301 F 1 
HETATM 18 O O3' ATP . . . Q 4 156.612 41.412 -27.763 1 135.18 ? O3' ATP 301 F 1 
HETATM 19 C C2' ATP . . . Q 4 159.04 41.721 -27.352 1 134.01 ? C2' ATP 301 F 1 
HETATM 20 O O2' ATP . . . Q 4 158.561 42.82 -26.594 1 135.6 ? O2' ATP 301 F 1 
HETATM 21 C C1' ATP . . . Q 4 160.03 40.886 -26.534 1 132.38 ? C1' ATP 301 F 1 
HETATM 22 N N9 ATP . . . Q 4 161.076 40.198 -27.353 1 131.1 ? N9 ATP 301 F 1 
HETATM 23 C C8 ATP . . . Q 4 161.587 38.972 -27.1 1 130.15 ? C8 ATP 301 F 1 
HETATM 24 N N7 ATP . . . Q 4 162.516 38.635 -28.023 1 129.33 ? N7 ATP 301 F 1 
HETATM 25 C C5 ATP . . . Q 4 162.618 39.643 -28.901 1 129.45 ? C5 ATP 301 F 1 
HETATM 26 C C6 ATP . . . Q 4 163.413 39.929 -30.12 1 129.64 ? C6 ATP 301 F 1 
HETATM 27 N N6 ATP . . . Q 4 164.316 39.038 -30.599 1 130.59 ? N6 ATP 301 F 1 
HETATM 28 N N1 ATP . . . Q 4 163.212 41.111 -30.74 1 129.82 ? N1 ATP 301 F 1 
HETATM 29 C C2 ATP . . . Q 4 162.324 42.012 -30.281 1 130.89 ? C2 ATP 301 F 1 
HETATM 30 N N3 ATP . . . Q 4 161.579 41.807 -29.183 1 131.69 ? N3 ATP 301 F 1 
HETATM 31 C C4 ATP . . . Q 4 161.67 40.668 -28.458 1 130.91 ? C4 ATP 301 F 1 
#
_model_server_stats.io_time_ms              192 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#