data_5UJB # _model_server_result.job_id Ymjw7JuQ2cVgvdmCQr5Mbw _model_server_result.datetime_utc '2024-11-28 15:25:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ujb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 5UJB # _exptl.entry_id 5UJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.15 _cell.angle_gamma 90 _cell.entry_id 5UJB _cell.length_a 58.844 _cell.length_b 182.338 _cell.length_c 58.925 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 77 A CYS 53 1_555 A SG CYS 86 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 99 A CYS 75 1_555 A SG CYS 115 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 114 A CYS 90 1_555 A SG CYS 125 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 148 A CYS 124 1_555 A SG CYS 193 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 A SG CYS 192 A CYS 168 1_555 A SG CYS 201 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 224 A CYS 200 1_555 A SG CYS 270 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? disulf ? disulf7 A SG CYS 269 A CYS 245 1_555 A SG CYS 277 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 A SG CYS 340 A CYS 316 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 A SG CYS 384 A CYS 360 1_555 A SG CYS 393 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf10 A SG CYS 416 A CYS 392 1_555 A SG CYS 462 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf11 A SG CYS 461 A CYS 437 1_555 A SG CYS 472 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 A SG CYS 485 A CYS 461 1_555 A SG CYS 501 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf13 A SG CYS 500 A CYS 476 1_555 A SG CYS 511 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf14 A SG CYS 538 A CYS 514 1_555 A SG CYS 583 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 A SG CYS 582 A CYS 558 1_555 A SG CYS 591 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 B SG CYS 77 B CYS 53 1_555 B SG CYS 86 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf17 B SG CYS 99 B CYS 75 1_555 B SG CYS 115 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? disulf ? disulf18 B SG CYS 114 B CYS 90 1_555 B SG CYS 125 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf19 B SG CYS 148 B CYS 124 1_555 B SG CYS 193 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf20 B SG CYS 192 B CYS 168 1_555 B SG CYS 201 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf21 B SG CYS 224 B CYS 200 1_555 B SG CYS 270 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 B SG CYS 269 B CYS 245 1_555 B SG CYS 277 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf23 B SG CYS 289 B CYS 265 1_555 B SG CYS 303 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf24 B SG CYS 302 B CYS 278 1_555 B SG CYS 313 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf25 B SG CYS 340 B CYS 316 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf26 B SG CYS 384 B CYS 360 1_555 B SG CYS 393 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf27 B SG CYS 416 B CYS 392 1_555 B SG CYS 462 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf28 B SG CYS 485 B CYS 461 1_555 B SG CYS 501 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf29 B SG CYS 500 B CYS 476 1_555 B SG CYS 511 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf30 B SG CYS 538 B CYS 514 1_555 B SG CYS 583 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf31 B SG CYS 582 B CYS 558 1_555 B SG CYS 591 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 353 n n P O2 PO4 sing 354 n n P O3 PO4 sing 355 n n P O4 PO4 sing 356 n n # _atom_sites.entry_id 5UJB _atom_sites.fract_transf_matrix[1][1] 0.016994 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6AK A 1 800 800 6AK 6AK . D 3 PO4 A 1 801 801 PO4 PO4 . E 3 PO4 B 1 801 801 PO4 PO4 . F 2 6AK B 1 802 800 6AK 6AK . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 3 12.214 36.885 16.404 0.96 56.12 ? P PO4 801 B 1 HETATM 2 O O1 PO4 . . . E 3 12.936 37.108 15.053 0.96 30.93 ? O1 PO4 801 B 1 HETATM 3 O O2 PO4 . . . E 3 11.36 38.132 16.723 0.96 42.26 ? O2 PO4 801 B 1 HETATM 4 O O3 PO4 . . . E 3 11.176 35.731 16.45 0.96 55.11 ? O3 PO4 801 B 1 HETATM 5 O O4 PO4 . . . E 3 13.371 36.567 17.417 0.96 55.38 ? O4 PO4 801 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #