data_5UJC # _model_server_result.job_id ASAwdLGOss-DOcf3suMc0A _model_server_result.datetime_utc '2024-11-01 09:36:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ujc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5UJC # _exptl.entry_id 5UJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UJC _cell.length_a 53.008 _cell.length_b 66.089 _cell.length_c 92.826 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 322 n n C1 C2 GOL sing 323 n n C1 H11 GOL sing 324 n n C1 H12 GOL sing 325 n n O1 HO1 GOL sing 326 n n C2 O2 GOL sing 327 n n C2 C3 GOL sing 328 n n C2 H2 GOL sing 329 n n O2 HO2 GOL sing 330 n n C3 O3 GOL sing 331 n n C3 H31 GOL sing 332 n n C3 H32 GOL sing 333 n n O3 HO3 GOL sing 334 n n # _atom_sites.entry_id 5UJC _atom_sites.fract_transf_matrix[1][1] 0.018865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COB A 1 300 300 COB COB . C 3 TLA A 1 301 301 TLA TAR . D 3 TLA A 1 302 302 TLA TAR . E 4 TAR A 1 303 303 TAR TAR . F 5 GOL A 1 304 304 GOL GOL . G 6 HOH A 1 401 268 HOH HOH . G 6 HOH A 2 402 297 HOH HOH . G 6 HOH A 3 403 293 HOH HOH . G 6 HOH A 4 404 139 HOH HOH . G 6 HOH A 5 405 108 HOH HOH . G 6 HOH A 6 406 252 HOH HOH . G 6 HOH A 7 407 38 HOH HOH . G 6 HOH A 8 408 281 HOH HOH . G 6 HOH A 9 409 166 HOH HOH . G 6 HOH A 10 410 261 HOH HOH . G 6 HOH A 11 411 238 HOH HOH . G 6 HOH A 12 412 72 HOH HOH . G 6 HOH A 13 413 81 HOH HOH . G 6 HOH A 14 414 24 HOH HOH . G 6 HOH A 15 415 242 HOH HOH . G 6 HOH A 16 416 84 HOH HOH . G 6 HOH A 17 417 179 HOH HOH . G 6 HOH A 18 418 257 HOH HOH . G 6 HOH A 19 419 107 HOH HOH . G 6 HOH A 20 420 203 HOH HOH . G 6 HOH A 21 421 50 HOH HOH . G 6 HOH A 22 422 70 HOH HOH . G 6 HOH A 23 423 54 HOH HOH . G 6 HOH A 24 424 246 HOH HOH . G 6 HOH A 25 425 198 HOH HOH . G 6 HOH A 26 426 296 HOH HOH . G 6 HOH A 27 427 65 HOH HOH . G 6 HOH A 28 428 11 HOH HOH . G 6 HOH A 29 429 3 HOH HOH . G 6 HOH A 30 430 109 HOH HOH . G 6 HOH A 31 431 79 HOH HOH . G 6 HOH A 32 432 277 HOH HOH . G 6 HOH A 33 433 19 HOH HOH . G 6 HOH A 34 434 25 HOH HOH . G 6 HOH A 35 435 258 HOH HOH . G 6 HOH A 36 436 94 HOH HOH . G 6 HOH A 37 437 17 HOH HOH . G 6 HOH A 38 438 10 HOH HOH . G 6 HOH A 39 439 125 HOH HOH . G 6 HOH A 40 440 22 HOH HOH . G 6 HOH A 41 441 275 HOH HOH . G 6 HOH A 42 442 26 HOH HOH . G 6 HOH A 43 443 110 HOH HOH . G 6 HOH A 44 444 116 HOH HOH . G 6 HOH A 45 445 215 HOH HOH . G 6 HOH A 46 446 80 HOH HOH . G 6 HOH A 47 447 77 HOH HOH . G 6 HOH A 48 448 68 HOH HOH . G 6 HOH A 49 449 31 HOH HOH . G 6 HOH A 50 450 8 HOH HOH . G 6 HOH A 51 451 158 HOH HOH . G 6 HOH A 52 452 87 HOH HOH . G 6 HOH A 53 453 53 HOH HOH . G 6 HOH A 54 454 34 HOH HOH . G 6 HOH A 55 455 127 HOH HOH . G 6 HOH A 56 456 128 HOH HOH . G 6 HOH A 57 457 41 HOH HOH . G 6 HOH A 58 458 217 HOH HOH . G 6 HOH A 59 459 29 HOH HOH . G 6 HOH A 60 460 114 HOH HOH . G 6 HOH A 61 461 174 HOH HOH . G 6 HOH A 62 462 46 HOH HOH . G 6 HOH A 63 463 55 HOH HOH . G 6 HOH A 64 464 145 HOH HOH . G 6 HOH A 65 465 45 HOH HOH . G 6 HOH A 66 466 2 HOH HOH . G 6 HOH A 67 467 143 HOH HOH . G 6 HOH A 68 468 150 HOH HOH . G 6 HOH A 69 469 250 HOH HOH . G 6 HOH A 70 470 243 HOH HOH . G 6 HOH A 71 471 149 HOH HOH . G 6 HOH A 72 472 135 HOH HOH . G 6 HOH A 73 473 186 HOH HOH . G 6 HOH A 74 474 71 HOH HOH . G 6 HOH A 75 475 190 HOH HOH . G 6 HOH A 76 476 66 HOH HOH . G 6 HOH A 77 477 9 HOH HOH . G 6 HOH A 78 478 235 HOH HOH . G 6 HOH A 79 479 57 HOH HOH . G 6 HOH A 80 480 129 HOH HOH . G 6 HOH A 81 481 40 HOH HOH . G 6 HOH A 82 482 15 HOH HOH . G 6 HOH A 83 483 291 HOH HOH . G 6 HOH A 84 484 241 HOH HOH . G 6 HOH A 85 485 27 HOH HOH . G 6 HOH A 86 486 138 HOH HOH . G 6 HOH A 87 487 196 HOH HOH . G 6 HOH A 88 488 47 HOH HOH . G 6 HOH A 89 489 172 HOH HOH . G 6 HOH A 90 490 131 HOH HOH . G 6 HOH A 91 491 28 HOH HOH . G 6 HOH A 92 492 88 HOH HOH . G 6 HOH A 93 493 16 HOH HOH . G 6 HOH A 94 494 255 HOH HOH . G 6 HOH A 95 495 118 HOH HOH . G 6 HOH A 96 496 164 HOH HOH . G 6 HOH A 97 497 33 HOH HOH . G 6 HOH A 98 498 67 HOH HOH . G 6 HOH A 99 499 156 HOH HOH . G 6 HOH A 100 500 6 HOH HOH . G 6 HOH A 101 501 225 HOH HOH . G 6 HOH A 102 502 21 HOH HOH . G 6 HOH A 103 503 259 HOH HOH . G 6 HOH A 104 504 287 HOH HOH . G 6 HOH A 105 505 12 HOH HOH . G 6 HOH A 106 506 92 HOH HOH . G 6 HOH A 107 507 228 HOH HOH . G 6 HOH A 108 508 271 HOH HOH . G 6 HOH A 109 509 124 HOH HOH . G 6 HOH A 110 510 177 HOH HOH . G 6 HOH A 111 511 231 HOH HOH . G 6 HOH A 112 512 104 HOH HOH . G 6 HOH A 113 513 253 HOH HOH . G 6 HOH A 114 514 161 HOH HOH . G 6 HOH A 115 515 69 HOH HOH . G 6 HOH A 116 516 48 HOH HOH . G 6 HOH A 117 517 101 HOH HOH . G 6 HOH A 118 518 132 HOH HOH . G 6 HOH A 119 519 152 HOH HOH . G 6 HOH A 120 520 274 HOH HOH . G 6 HOH A 121 521 169 HOH HOH . G 6 HOH A 122 522 32 HOH HOH . G 6 HOH A 123 523 30 HOH HOH . G 6 HOH A 124 524 200 HOH HOH . G 6 HOH A 125 525 171 HOH HOH . G 6 HOH A 126 526 165 HOH HOH . G 6 HOH A 127 527 85 HOH HOH . G 6 HOH A 128 528 78 HOH HOH . G 6 HOH A 129 529 227 HOH HOH . G 6 HOH A 130 530 76 HOH HOH . G 6 HOH A 131 531 205 HOH HOH . G 6 HOH A 132 532 105 HOH HOH . G 6 HOH A 133 533 121 HOH HOH . G 6 HOH A 134 534 43 HOH HOH . G 6 HOH A 135 535 119 HOH HOH . G 6 HOH A 136 536 168 HOH HOH . G 6 HOH A 137 537 130 HOH HOH . G 6 HOH A 138 538 23 HOH HOH . G 6 HOH A 139 539 64 HOH HOH . G 6 HOH A 140 540 162 HOH HOH . G 6 HOH A 141 541 98 HOH HOH . G 6 HOH A 142 542 13 HOH HOH . G 6 HOH A 143 543 44 HOH HOH . G 6 HOH A 144 544 39 HOH HOH . G 6 HOH A 145 545 56 HOH HOH . G 6 HOH A 146 546 89 HOH HOH . G 6 HOH A 147 547 219 HOH HOH . G 6 HOH A 148 548 175 HOH HOH . G 6 HOH A 149 549 42 HOH HOH . G 6 HOH A 150 550 193 HOH HOH . G 6 HOH A 151 551 140 HOH HOH . G 6 HOH A 152 552 106 HOH HOH . G 6 HOH A 153 553 35 HOH HOH . G 6 HOH A 154 554 51 HOH HOH . G 6 HOH A 155 555 126 HOH HOH . G 6 HOH A 156 556 133 HOH HOH . G 6 HOH A 157 557 91 HOH HOH . G 6 HOH A 158 558 194 HOH HOH . G 6 HOH A 159 559 272 HOH HOH . G 6 HOH A 160 560 137 HOH HOH . G 6 HOH A 161 561 100 HOH HOH . G 6 HOH A 162 562 7 HOH HOH . G 6 HOH A 163 563 191 HOH HOH . G 6 HOH A 164 564 95 HOH HOH . G 6 HOH A 165 565 214 HOH HOH . G 6 HOH A 166 566 60 HOH HOH . G 6 HOH A 167 567 189 HOH HOH . G 6 HOH A 168 568 36 HOH HOH . G 6 HOH A 169 569 273 HOH HOH . G 6 HOH A 170 570 123 HOH HOH . G 6 HOH A 171 571 93 HOH HOH . G 6 HOH A 172 572 86 HOH HOH . G 6 HOH A 173 573 249 HOH HOH . G 6 HOH A 174 574 247 HOH HOH . G 6 HOH A 175 575 120 HOH HOH . G 6 HOH A 176 576 18 HOH HOH . G 6 HOH A 177 577 216 HOH HOH . G 6 HOH A 178 578 111 HOH HOH . G 6 HOH A 179 579 286 HOH HOH . G 6 HOH A 180 580 188 HOH HOH . G 6 HOH A 181 581 14 HOH HOH . G 6 HOH A 182 582 208 HOH HOH . G 6 HOH A 183 583 117 HOH HOH . G 6 HOH A 184 584 233 HOH HOH . G 6 HOH A 185 585 269 HOH HOH . G 6 HOH A 186 586 49 HOH HOH . G 6 HOH A 187 587 61 HOH HOH . G 6 HOH A 188 588 185 HOH HOH . G 6 HOH A 189 589 62 HOH HOH . G 6 HOH A 190 590 270 HOH HOH . G 6 HOH A 191 591 278 HOH HOH . G 6 HOH A 192 592 153 HOH HOH . G 6 HOH A 193 593 163 HOH HOH . G 6 HOH A 194 594 5 HOH HOH . G 6 HOH A 195 595 201 HOH HOH . G 6 HOH A 196 596 141 HOH HOH . G 6 HOH A 197 597 284 HOH HOH . G 6 HOH A 198 598 167 HOH HOH . G 6 HOH A 199 599 83 HOH HOH . G 6 HOH A 200 600 148 HOH HOH . G 6 HOH A 201 601 213 HOH HOH . G 6 HOH A 202 602 159 HOH HOH . G 6 HOH A 203 603 97 HOH HOH . G 6 HOH A 204 604 294 HOH HOH . G 6 HOH A 205 605 245 HOH HOH . G 6 HOH A 206 606 103 HOH HOH . G 6 HOH A 207 607 224 HOH HOH . G 6 HOH A 208 608 220 HOH HOH . G 6 HOH A 209 609 262 HOH HOH . G 6 HOH A 210 610 202 HOH HOH . G 6 HOH A 211 611 147 HOH HOH . G 6 HOH A 212 612 206 HOH HOH . G 6 HOH A 213 613 115 HOH HOH . G 6 HOH A 214 614 59 HOH HOH . G 6 HOH A 215 615 113 HOH HOH . G 6 HOH A 216 616 260 HOH HOH . G 6 HOH A 217 617 4 HOH HOH . G 6 HOH A 218 618 254 HOH HOH . G 6 HOH A 219 619 256 HOH HOH . G 6 HOH A 220 620 230 HOH HOH . G 6 HOH A 221 621 248 HOH HOH . G 6 HOH A 222 622 212 HOH HOH . G 6 HOH A 223 623 176 HOH HOH . G 6 HOH A 224 624 279 HOH HOH . G 6 HOH A 225 625 292 HOH HOH . G 6 HOH A 226 626 112 HOH HOH . G 6 HOH A 227 627 170 HOH HOH . G 6 HOH A 228 628 144 HOH HOH . G 6 HOH A 229 629 63 HOH HOH . G 6 HOH A 230 630 211 HOH HOH . G 6 HOH A 231 631 210 HOH HOH . G 6 HOH A 232 632 90 HOH HOH . G 6 HOH A 233 633 197 HOH HOH . G 6 HOH A 234 634 232 HOH HOH . G 6 HOH A 235 635 155 HOH HOH . G 6 HOH A 236 636 184 HOH HOH . G 6 HOH A 237 637 75 HOH HOH . G 6 HOH A 238 638 229 HOH HOH . G 6 HOH A 239 639 187 HOH HOH . G 6 HOH A 240 640 199 HOH HOH . G 6 HOH A 241 641 282 HOH HOH . G 6 HOH A 242 642 102 HOH HOH . G 6 HOH A 243 643 209 HOH HOH . G 6 HOH A 244 644 192 HOH HOH . G 6 HOH A 245 645 154 HOH HOH . G 6 HOH A 246 646 160 HOH HOH . G 6 HOH A 247 647 267 HOH HOH . G 6 HOH A 248 648 221 HOH HOH . G 6 HOH A 249 649 173 HOH HOH . G 6 HOH A 250 650 20 HOH HOH . G 6 HOH A 251 651 285 HOH HOH . G 6 HOH A 252 652 236 HOH HOH . G 6 HOH A 253 653 178 HOH HOH . G 6 HOH A 254 654 96 HOH HOH . G 6 HOH A 255 655 204 HOH HOH . G 6 HOH A 256 656 234 HOH HOH . G 6 HOH A 257 657 222 HOH HOH . G 6 HOH A 258 658 146 HOH HOH . G 6 HOH A 259 659 157 HOH HOH . G 6 HOH A 260 660 266 HOH HOH . G 6 HOH A 261 661 180 HOH HOH . G 6 HOH A 262 662 223 HOH HOH . G 6 HOH A 263 663 263 HOH HOH . G 6 HOH A 264 664 295 HOH HOH . G 6 HOH A 265 665 142 HOH HOH . G 6 HOH A 266 666 276 HOH HOH . G 6 HOH A 267 667 82 HOH HOH . G 6 HOH A 268 668 280 HOH HOH . G 6 HOH A 269 669 182 HOH HOH . G 6 HOH A 270 670 207 HOH HOH . G 6 HOH A 271 671 73 HOH HOH . G 6 HOH A 272 672 283 HOH HOH . G 6 HOH A 273 673 265 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 7.953 -2.53 -0.975 1 37.68 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . F 5 7.655 -1.623 0.099 1 36.08 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . F 5 9.36 -3.092 -0.92 1 39.4 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . F 5 9.841 -3.108 0.42 1 42.33 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . F 5 9.342 -4.513 -1.48 1 40.93 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . F 5 8.774 -4.527 -2.808 1 42.17 ? O3 GOL 304 A 1 HETATM 7 H H11 GOL . . . F 5 7.829 -2.071 -1.82 1 37.68 ? H11 GOL 304 A 1 HETATM 8 H H12 GOL . . . F 5 7.319 -3.263 -0.955 1 37.68 ? H12 GOL 304 A 1 HETATM 9 H HO1 GOL . . . F 5 8.125 -1.817 0.768 1 36.08 ? HO1 GOL 304 A 1 HETATM 10 H H2 GOL . . . F 5 9.95 -2.532 -1.448 1 39.4 ? H2 GOL 304 A 1 HETATM 11 H HO2 GOL . . . F 5 10.62 -3.422 0.435 1 42.33 ? HO2 GOL 304 A 1 HETATM 12 H H31 GOL . . . F 5 8.826 -5.09 -0.896 1 40.93 ? H31 GOL 304 A 1 HETATM 13 H H32 GOL . . . F 5 10.244 -4.868 -1.505 1 40.93 ? H32 GOL 304 A 1 HETATM 14 H HO3 GOL . . . F 5 8.772 -5.313 -3.104 1 42.17 ? HO3 GOL 304 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #