data_5UJD # _model_server_result.job_id cVgoiLQaMgjHUCKmKKA7Yw _model_server_result.datetime_utc '2024-11-04 22:43:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ujd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5UJD # _exptl.entry_id 5UJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UJD _cell.length_a 78.76 _cell.length_b 111.39 _cell.length_c 67.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 99 1_555 A SG CYS 158 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 A SG CYS 168 A CYS 166 1_555 B SG CYS 168 B CYS 166 2_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 170 A CYS 168 1_555 B SG CYS 170 B CYS 168 2_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 101 B CYS 99 1_555 B SG CYS 158 B CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 5UJD _atom_sites.fract_transf_matrix[1][1] 0.012697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT A 1 301 1 FMT FMT . D 2 FMT A 1 302 2 FMT FMT . E 2 FMT B 1 301 3 FMT FMT . F 3 HOH A 1 401 33 HOH HOH . F 3 HOH A 2 402 107 HOH HOH . F 3 HOH A 3 403 92 HOH HOH . F 3 HOH A 4 404 119 HOH HOH . F 3 HOH A 5 405 35 HOH HOH . F 3 HOH A 6 406 25 HOH HOH . F 3 HOH A 7 407 34 HOH HOH . F 3 HOH A 8 408 57 HOH HOH . F 3 HOH A 9 409 99 HOH HOH . F 3 HOH A 10 410 72 HOH HOH . F 3 HOH A 11 411 39 HOH HOH . F 3 HOH A 12 412 51 HOH HOH . F 3 HOH A 13 413 29 HOH HOH . F 3 HOH A 14 414 70 HOH HOH . F 3 HOH A 15 415 12 HOH HOH . F 3 HOH A 16 416 74 HOH HOH . F 3 HOH A 17 417 84 HOH HOH . F 3 HOH A 18 418 115 HOH HOH . F 3 HOH A 19 419 101 HOH HOH . F 3 HOH A 20 420 17 HOH HOH . F 3 HOH A 21 421 22 HOH HOH . F 3 HOH A 22 422 27 HOH HOH . F 3 HOH A 23 423 24 HOH HOH . F 3 HOH A 24 424 68 HOH HOH . F 3 HOH A 25 425 73 HOH HOH . F 3 HOH A 26 426 56 HOH HOH . F 3 HOH A 27 427 42 HOH HOH . F 3 HOH A 28 428 78 HOH HOH . F 3 HOH A 29 429 14 HOH HOH . F 3 HOH A 30 430 32 HOH HOH . F 3 HOH A 31 431 95 HOH HOH . F 3 HOH A 32 432 40 HOH HOH . F 3 HOH A 33 433 55 HOH HOH . F 3 HOH A 34 434 114 HOH HOH . F 3 HOH A 35 435 52 HOH HOH . F 3 HOH A 36 436 62 HOH HOH . F 3 HOH A 37 437 21 HOH HOH . F 3 HOH A 38 438 8 HOH HOH . F 3 HOH A 39 439 46 HOH HOH . F 3 HOH A 40 440 116 HOH HOH . F 3 HOH A 41 441 36 HOH HOH . F 3 HOH A 42 442 94 HOH HOH . F 3 HOH A 43 443 15 HOH HOH . F 3 HOH A 44 444 50 HOH HOH . F 3 HOH A 45 445 19 HOH HOH . F 3 HOH A 46 446 26 HOH HOH . F 3 HOH A 47 447 66 HOH HOH . F 3 HOH A 48 448 44 HOH HOH . F 3 HOH A 49 449 106 HOH HOH . F 3 HOH A 50 450 98 HOH HOH . F 3 HOH A 51 451 113 HOH HOH . F 3 HOH A 52 452 91 HOH HOH . F 3 HOH A 53 453 90 HOH HOH . F 3 HOH A 54 454 11 HOH HOH . F 3 HOH A 55 455 71 HOH HOH . F 3 HOH A 56 456 110 HOH HOH . F 3 HOH A 57 457 9 HOH HOH . F 3 HOH A 58 458 28 HOH HOH . F 3 HOH A 59 459 86 HOH HOH . F 3 HOH A 60 460 65 HOH HOH . F 3 HOH A 61 461 64 HOH HOH . F 3 HOH A 62 462 49 HOH HOH . F 3 HOH A 63 463 104 HOH HOH . G 3 HOH B 1 401 47 HOH HOH . G 3 HOH B 2 402 41 HOH HOH . G 3 HOH B 3 403 80 HOH HOH . G 3 HOH B 4 404 48 HOH HOH . G 3 HOH B 5 405 81 HOH HOH . G 3 HOH B 6 406 61 HOH HOH . G 3 HOH B 7 407 77 HOH HOH . G 3 HOH B 8 408 13 HOH HOH . G 3 HOH B 9 409 20 HOH HOH . G 3 HOH B 10 410 2 HOH HOH . G 3 HOH B 11 411 112 HOH HOH . G 3 HOH B 12 412 53 HOH HOH . G 3 HOH B 13 413 4 HOH HOH . G 3 HOH B 14 414 100 HOH HOH . G 3 HOH B 15 415 1 HOH HOH . G 3 HOH B 16 416 103 HOH HOH . G 3 HOH B 17 417 7 HOH HOH . G 3 HOH B 18 418 102 HOH HOH . G 3 HOH B 19 419 60 HOH HOH . G 3 HOH B 20 420 82 HOH HOH . G 3 HOH B 21 421 16 HOH HOH . G 3 HOH B 22 422 3 HOH HOH . G 3 HOH B 23 423 83 HOH HOH . G 3 HOH B 24 424 23 HOH HOH . G 3 HOH B 25 425 10 HOH HOH . G 3 HOH B 26 426 6 HOH HOH . G 3 HOH B 27 427 37 HOH HOH . G 3 HOH B 28 428 63 HOH HOH . G 3 HOH B 29 429 45 HOH HOH . G 3 HOH B 30 430 59 HOH HOH . G 3 HOH B 31 431 38 HOH HOH . G 3 HOH B 32 432 54 HOH HOH . G 3 HOH B 33 433 31 HOH HOH . G 3 HOH B 34 434 67 HOH HOH . G 3 HOH B 35 435 85 HOH HOH . G 3 HOH B 36 436 97 HOH HOH . G 3 HOH B 37 437 5 HOH HOH . G 3 HOH B 38 438 108 HOH HOH . G 3 HOH B 39 439 111 HOH HOH . G 3 HOH B 40 440 79 HOH HOH . G 3 HOH B 41 441 75 HOH HOH . G 3 HOH B 42 442 93 HOH HOH . G 3 HOH B 43 443 30 HOH HOH . G 3 HOH B 44 444 118 HOH HOH . G 3 HOH B 45 445 76 HOH HOH . G 3 HOH B 46 446 117 HOH HOH . G 3 HOH B 47 447 43 HOH HOH . G 3 HOH B 48 448 69 HOH HOH . G 3 HOH B 49 449 105 HOH HOH . G 3 HOH B 50 450 109 HOH HOH . G 3 HOH B 51 451 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . E 2 90.075 -5.115 82.53 1 50.38 ? C FMT 301 B 1 HETATM 2 O O1 FMT . . . E 2 90.96 -4.669 81.799 1 55.69 ? O1 FMT 301 B 1 HETATM 3 O O2 FMT . . . E 2 89.98 -4.778 83.708 1 43.7 ? O2 FMT 301 B 1 HETATM 4 H H FMT . . . E 2 89.344 -5.828 82.148 1 60.45 ? H FMT 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 4 #