data_5UJM # _model_server_result.job_id 54_d9LakpuAGP-2osT3Niw _model_server_result.datetime_utc '2024-11-26 11:05:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ujm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 5UJM # _exptl.entry_id 5UJM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 H N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 281 A ASP 620 1_555 G MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 A OD2 ASP 281 A ASP 620 1_555 G MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 F O1B ATP . A ATP 901 1_555 G MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 D OG1 THR 74 D THR 74 1_555 I MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc5 H O3G ATP . D ATP 901 1_555 I MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc6 H O3B ATP . D ATP 901 1_555 I MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5UJM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ATP A 1 901 900 ATP ATP . G 7 MG A 1 902 903 MG MG . H 6 ATP D 1 901 901 ATP ATP . I 7 MG D 1 902 904 MG MG . J 6 ATP E 1 501 902 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 6 154.63 197.803 129.585 1 100 ? PG ATP 901 A 1 HETATM 2 O O1G ATP . . . F 6 155.496 197.043 128.613 1 100 -1 O1G ATP 901 A 1 HETATM 3 O O2G ATP . . . F 6 154.579 197.221 130.977 1 100 ? O2G ATP 901 A 1 HETATM 4 O O3G ATP . . . F 6 153.304 198.21 128.995 1 100 ? O3G ATP 901 A 1 HETATM 5 P PB ATP . . . F 6 156.364 199.686 128.566 1 100 ? PB ATP 901 A 1 HETATM 6 O O1B ATP . . . F 6 155.47 200.408 127.584 1 100 -1 O1B ATP 901 A 1 HETATM 7 O O2B ATP . . . F 6 157.32 198.608 128.1 1 100 ? O2B ATP 901 A 1 HETATM 8 O O3B ATP . . . F 6 155.425 199.179 129.771 1 100 ? O3B ATP 901 A 1 HETATM 9 P PA ATP . . . F 6 158.804 200.786 129.345 1 100 ? PA ATP 901 A 1 HETATM 10 O O1A ATP . . . F 6 159.235 201.448 128.06 1 100 -1 O1A ATP 901 A 1 HETATM 11 O O2A ATP . . . F 6 159.329 199.427 129.752 1 100 ? O2A ATP 901 A 1 HETATM 12 O O3A ATP . . . F 6 157.205 200.783 129.362 1 100 ? O3A ATP 901 A 1 HETATM 13 O O5' ATP . . . F 6 158.946 201.823 130.546 1 100 ? O5' ATP 901 A 1 HETATM 14 C C5' ATP . . . F 6 160.132 202.529 130.825 1 100 ? C5' ATP 901 A 1 HETATM 15 C C4' ATP . . . F 6 160.591 202.148 132.221 1 100 ? C4' ATP 901 A 1 HETATM 16 O O4' ATP . . . F 6 161.414 200.977 132.163 1 100 ? O4' ATP 901 A 1 HETATM 17 C C3' ATP . . . F 6 161.447 203.252 132.822 1 100 ? C3' ATP 901 A 1 HETATM 18 O O3' ATP . . . F 6 160.765 203.921 133.891 1 100 ? O3' ATP 901 A 1 HETATM 19 C C2' ATP . . . F 6 162.73 202.611 133.283 1 100 ? C2' ATP 901 A 1 HETATM 20 O O2' ATP . . . F 6 162.74 202.556 134.714 1 100 ? O2' ATP 901 A 1 HETATM 21 C C1' ATP . . . F 6 162.712 201.189 132.736 1 100 ? C1' ATP 901 A 1 HETATM 22 N N9 ATP . . . F 6 163.675 200.978 131.62 1 100 ? N9 ATP 901 A 1 HETATM 23 C C8 ATP . . . F 6 163.494 200.037 130.664 1 100 ? C8 ATP 901 A 1 HETATM 24 N N7 ATP . . . F 6 164.517 200.034 129.774 1 100 ? N7 ATP 901 A 1 HETATM 25 C C5 ATP . . . F 6 165.386 200.976 130.168 1 100 ? C5 ATP 901 A 1 HETATM 26 C C6 ATP . . . F 6 166.676 201.486 129.665 1 100 ? C6 ATP 901 A 1 HETATM 27 N N6 ATP . . . F 6 167.217 200.952 128.551 1 100 ? N6 ATP 901 A 1 HETATM 28 N N1 ATP . . . F 6 167.286 202.477 130.347 1 100 ? N1 ATP 901 A 1 HETATM 29 C C2 ATP . . . F 6 166.745 203.006 131.46 1 100 ? C2 ATP 901 A 1 HETATM 30 N N3 ATP . . . F 6 165.572 202.582 131.966 1 100 ? N3 ATP 901 A 1 HETATM 31 C C4 ATP . . . F 6 164.854 201.578 131.395 1 100 ? C4 ATP 901 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #