data_5UK8 # _model_server_result.job_id VFVbSDcsfdsinT8Bny5gVQ _model_server_result.datetime_utc '2024-12-07 13:43:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 5UK8 # _exptl.entry_id 5UK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.543 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-4-(6-(1-(cyclopropylsulfonyl)cyclopropyl)-2-(1H-indol-4-yl)pyrimidin-4-yl)-3-methylmorpholine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UK8 _cell.length_a 104.028 _cell.length_b 107.097 _cell.length_c 134.706 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H26 N4 O3 S' _chem_comp.formula_weight 438.543 _chem_comp.id 8DV _chem_comp.mon_nstd_flag . _chem_comp.name (R)-4-(6-(1-(cyclopropylsulfonyl)cyclopropyl)-2-(1H-indol-4-yl)pyrimidin-4-yl)-3-methylmorpholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-{4-[1-(cyclopropylsulfonyl)cyclopropyl]-6-[(3R)-3-methylmorpholin-4-yl]pyrimidin-2-yl}-1H-indole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 O 8DV sing 1 n n C3 C4 8DV sing 2 n n O C2 8DV sing 3 n n C4 N 8DV sing 4 n n C2 C1 8DV sing 5 n n N C1 8DV sing 6 n n N C5 8DV sing 7 n n C1 C 8DV sing 8 n n C6 C5 8DV doub 9 n y C6 C7 8DV sing 10 n y C5 N2 8DV sing 11 n y C19 C17 8DV sing 12 n n C19 C18 8DV sing 13 n n O1 S 8DV doub 14 n n N2 C8 8DV doub 15 n y C7 C17 8DV sing 16 n n C7 N1 8DV doub 17 n y C17 S 8DV sing 18 n n C17 C18 8DV sing 19 n n O2 S 8DV doub 20 n n S C20 8DV sing 21 n n C8 N1 8DV sing 22 n y C8 C9 8DV sing 23 n n C15 C14 8DV doub 24 n y C15 C16 8DV sing 25 n y C14 N3 8DV sing 26 n y C20 C21 8DV sing 27 n n C20 C22 8DV sing 28 n n C16 C9 8DV doub 29 n y C16 C13 8DV sing 30 n y C9 C10 8DV sing 31 n y C21 C22 8DV sing 32 n n N3 C13 8DV sing 33 n y C13 C12 8DV doub 34 n y C10 C11 8DV doub 35 n y C12 C11 8DV sing 36 n y C1 H1 8DV sing 37 n n C2 H2 8DV sing 38 n n C2 H3 8DV sing 39 n n C3 H4 8DV sing 40 n n C3 H5 8DV sing 41 n n C11 H6 8DV sing 42 n n C12 H7 8DV sing 43 n n C14 H8 8DV sing 44 n n C15 H9 8DV sing 45 n n C18 H10 8DV sing 46 n n C18 H11 8DV sing 47 n n C19 H12 8DV sing 48 n n C19 H13 8DV sing 49 n n C20 H14 8DV sing 50 n n C21 H15 8DV sing 51 n n C21 H16 8DV sing 52 n n C22 H17 8DV sing 53 n n C22 H18 8DV sing 54 n n C6 H19 8DV sing 55 n n N3 H20 8DV sing 56 n n C10 H21 8DV sing 57 n n C H22 8DV sing 58 n n C H23 8DV sing 59 n n C H24 8DV sing 60 n n C4 H25 8DV sing 61 n n C4 H26 8DV sing 62 n n # _atom_sites.entry_id 5UK8 _atom_sites.fract_transf_matrix[1][1] 0.009613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8DV A 1 1101 1 8DV LI1 . D 4 HOH A 1 1201 136 HOH HOH . D 4 HOH A 2 1202 178 HOH HOH . D 4 HOH A 3 1203 175 HOH HOH . D 4 HOH A 4 1204 184 HOH HOH . D 4 HOH A 5 1205 148 HOH HOH . D 4 HOH A 6 1206 176 HOH HOH . D 4 HOH A 7 1207 13 HOH HOH . D 4 HOH A 8 1208 183 HOH HOH . D 4 HOH A 9 1209 72 HOH HOH . D 4 HOH A 10 1210 40 HOH HOH . D 4 HOH A 11 1211 5 HOH HOH . D 4 HOH A 12 1212 111 HOH HOH . D 4 HOH A 13 1213 35 HOH HOH . D 4 HOH A 14 1214 109 HOH HOH . D 4 HOH A 15 1215 29 HOH HOH . D 4 HOH A 16 1216 50 HOH HOH . D 4 HOH A 17 1217 80 HOH HOH . D 4 HOH A 18 1218 179 HOH HOH . D 4 HOH A 19 1219 17 HOH HOH . D 4 HOH A 20 1220 114 HOH HOH . D 4 HOH A 21 1221 26 HOH HOH . D 4 HOH A 22 1222 103 HOH HOH . D 4 HOH A 23 1223 51 HOH HOH . D 4 HOH A 24 1224 48 HOH HOH . D 4 HOH A 25 1225 129 HOH HOH . D 4 HOH A 26 1226 41 HOH HOH . D 4 HOH A 27 1227 115 HOH HOH . D 4 HOH A 28 1228 3 HOH HOH . D 4 HOH A 29 1229 131 HOH HOH . D 4 HOH A 30 1230 85 HOH HOH . D 4 HOH A 31 1231 159 HOH HOH . D 4 HOH A 32 1232 180 HOH HOH . D 4 HOH A 33 1233 60 HOH HOH . D 4 HOH A 34 1234 126 HOH HOH . D 4 HOH A 35 1235 164 HOH HOH . D 4 HOH A 36 1236 134 HOH HOH . D 4 HOH A 37 1237 182 HOH HOH . D 4 HOH A 38 1238 38 HOH HOH . D 4 HOH A 39 1239 75 HOH HOH . D 4 HOH A 40 1240 101 HOH HOH . D 4 HOH A 41 1241 105 HOH HOH . D 4 HOH A 42 1242 8 HOH HOH . D 4 HOH A 43 1243 27 HOH HOH . D 4 HOH A 44 1244 135 HOH HOH . D 4 HOH A 45 1245 132 HOH HOH . D 4 HOH A 46 1246 133 HOH HOH . D 4 HOH A 47 1247 45 HOH HOH . D 4 HOH A 48 1248 12 HOH HOH . D 4 HOH A 49 1249 34 HOH HOH . D 4 HOH A 50 1250 98 HOH HOH . D 4 HOH A 51 1251 16 HOH HOH . D 4 HOH A 52 1252 151 HOH HOH . D 4 HOH A 53 1253 39 HOH HOH . D 4 HOH A 54 1254 91 HOH HOH . D 4 HOH A 55 1255 43 HOH HOH . D 4 HOH A 56 1256 63 HOH HOH . D 4 HOH A 57 1257 7 HOH HOH . D 4 HOH A 58 1258 163 HOH HOH . D 4 HOH A 59 1259 147 HOH HOH . D 4 HOH A 60 1260 58 HOH HOH . D 4 HOH A 61 1261 37 HOH HOH . D 4 HOH A 62 1262 15 HOH HOH . D 4 HOH A 63 1263 18 HOH HOH . D 4 HOH A 64 1264 162 HOH HOH . D 4 HOH A 65 1265 10 HOH HOH . D 4 HOH A 66 1266 156 HOH HOH . D 4 HOH A 67 1267 96 HOH HOH . D 4 HOH A 68 1268 86 HOH HOH . D 4 HOH A 69 1269 2 HOH HOH . D 4 HOH A 70 1270 130 HOH HOH . D 4 HOH A 71 1271 55 HOH HOH . D 4 HOH A 72 1272 97 HOH HOH . D 4 HOH A 73 1273 69 HOH HOH . D 4 HOH A 74 1274 65 HOH HOH . D 4 HOH A 75 1275 174 HOH HOH . D 4 HOH A 76 1276 71 HOH HOH . D 4 HOH A 77 1277 141 HOH HOH . D 4 HOH A 78 1278 9 HOH HOH . D 4 HOH A 79 1279 25 HOH HOH . D 4 HOH A 80 1280 76 HOH HOH . D 4 HOH A 81 1281 53 HOH HOH . D 4 HOH A 82 1282 42 HOH HOH . D 4 HOH A 83 1283 4 HOH HOH . D 4 HOH A 84 1284 90 HOH HOH . D 4 HOH A 85 1285 79 HOH HOH . D 4 HOH A 86 1286 142 HOH HOH . D 4 HOH A 87 1287 94 HOH HOH . D 4 HOH A 88 1288 158 HOH HOH . D 4 HOH A 89 1289 1 HOH HOH . D 4 HOH A 90 1290 165 HOH HOH . D 4 HOH A 91 1291 143 HOH HOH . D 4 HOH A 92 1292 14 HOH HOH . D 4 HOH A 93 1293 137 HOH HOH . D 4 HOH A 94 1294 30 HOH HOH . D 4 HOH A 95 1295 81 HOH HOH . D 4 HOH A 96 1296 11 HOH HOH . D 4 HOH A 97 1297 128 HOH HOH . D 4 HOH A 98 1298 6 HOH HOH . D 4 HOH A 99 1299 168 HOH HOH . D 4 HOH A 100 1300 118 HOH HOH . D 4 HOH A 101 1301 139 HOH HOH . D 4 HOH A 102 1302 108 HOH HOH . D 4 HOH A 103 1303 104 HOH HOH . D 4 HOH A 104 1304 32 HOH HOH . D 4 HOH A 105 1305 44 HOH HOH . D 4 HOH A 106 1306 116 HOH HOH . D 4 HOH A 107 1307 54 HOH HOH . D 4 HOH A 108 1308 31 HOH HOH . D 4 HOH A 109 1309 33 HOH HOH . D 4 HOH A 110 1310 121 HOH HOH . D 4 HOH A 111 1311 120 HOH HOH . D 4 HOH A 112 1312 88 HOH HOH . D 4 HOH A 113 1313 22 HOH HOH . D 4 HOH A 114 1314 52 HOH HOH . D 4 HOH A 115 1315 92 HOH HOH . D 4 HOH A 116 1316 24 HOH HOH . D 4 HOH A 117 1317 172 HOH HOH . D 4 HOH A 118 1318 138 HOH HOH . D 4 HOH A 119 1319 19 HOH HOH . D 4 HOH A 120 1320 167 HOH HOH . D 4 HOH A 121 1321 59 HOH HOH . D 4 HOH A 122 1322 68 HOH HOH . D 4 HOH A 123 1323 124 HOH HOH . D 4 HOH A 124 1324 82 HOH HOH . D 4 HOH A 125 1325 127 HOH HOH . D 4 HOH A 126 1326 62 HOH HOH . D 4 HOH A 127 1327 154 HOH HOH . D 4 HOH A 128 1328 177 HOH HOH . D 4 HOH A 129 1329 110 HOH HOH . D 4 HOH A 130 1330 106 HOH HOH . D 4 HOH A 131 1331 185 HOH HOH . D 4 HOH A 132 1332 83 HOH HOH . D 4 HOH A 133 1333 47 HOH HOH . D 4 HOH A 134 1334 169 HOH HOH . D 4 HOH A 135 1335 173 HOH HOH . D 4 HOH A 136 1336 145 HOH HOH . D 4 HOH A 137 1337 70 HOH HOH . D 4 HOH A 138 1338 78 HOH HOH . D 4 HOH A 139 1339 21 HOH HOH . D 4 HOH A 140 1340 155 HOH HOH . D 4 HOH A 141 1341 28 HOH HOH . D 4 HOH A 142 1342 117 HOH HOH . D 4 HOH A 143 1343 171 HOH HOH . D 4 HOH A 144 1344 89 HOH HOH . D 4 HOH A 145 1345 160 HOH HOH . D 4 HOH A 146 1346 74 HOH HOH . D 4 HOH A 147 1347 125 HOH HOH . D 4 HOH A 148 1348 157 HOH HOH . D 4 HOH A 149 1349 102 HOH HOH . D 4 HOH A 150 1350 100 HOH HOH . D 4 HOH A 151 1351 23 HOH HOH . D 4 HOH A 152 1352 99 HOH HOH . D 4 HOH A 153 1353 181 HOH HOH . D 4 HOH A 154 1354 20 HOH HOH . D 4 HOH A 155 1355 87 HOH HOH . D 4 HOH A 156 1356 64 HOH HOH . D 4 HOH A 157 1357 122 HOH HOH . D 4 HOH A 158 1358 140 HOH HOH . D 4 HOH A 159 1359 123 HOH HOH . D 4 HOH A 160 1360 161 HOH HOH . E 4 HOH B 1 601 107 HOH HOH . E 4 HOH B 2 602 46 HOH HOH . E 4 HOH B 3 603 95 HOH HOH . E 4 HOH B 4 604 119 HOH HOH . E 4 HOH B 5 605 112 HOH HOH . E 4 HOH B 6 606 150 HOH HOH . E 4 HOH B 7 607 113 HOH HOH . E 4 HOH B 8 608 49 HOH HOH . E 4 HOH B 9 609 84 HOH HOH . E 4 HOH B 10 610 36 HOH HOH . E 4 HOH B 11 611 66 HOH HOH . E 4 HOH B 12 612 73 HOH HOH . E 4 HOH B 13 613 93 HOH HOH . E 4 HOH B 14 614 67 HOH HOH . E 4 HOH B 15 615 57 HOH HOH . E 4 HOH B 16 616 77 HOH HOH . E 4 HOH B 17 617 144 HOH HOH . E 4 HOH B 18 618 170 HOH HOH . E 4 HOH B 19 619 166 HOH HOH . E 4 HOH B 20 620 56 HOH HOH . E 4 HOH B 21 621 61 HOH HOH . E 4 HOH B 22 622 152 HOH HOH . E 4 HOH B 23 623 149 HOH HOH . E 4 HOH B 24 624 146 HOH HOH . E 4 HOH B 25 625 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8DV . . . C 3 -3.154 -11.831 17.712 1 48.47 ? C1 8DV 1101 A 1 HETATM 2 C C2 8DV . . . C 3 -3.836 -12.278 16.429 1 47.6 ? C2 8DV 1101 A 1 HETATM 3 C C3 8DV . . . C 3 -2.782 -10.606 15.121 1 45.9 ? C3 8DV 1101 A 1 HETATM 4 O O1 8DV . . . C 3 0.594 -6.969 19.547 1 74.42 ? O1 8DV 1101 A 1 HETATM 5 O O2 8DV . . . C 3 0.194 -4.545 19.967 1 72.69 ? O2 8DV 1101 A 1 HETATM 6 C C11 8DV . . . C 3 -4.333 -9.722 24.49 1 45.8 ? C11 8DV 1101 A 1 HETATM 7 C C12 8DV . . . C 3 -5.239 -10.774 24.453 1 46.4 ? C12 8DV 1101 A 1 HETATM 8 C C13 8DV . . . C 3 -5.534 -11.352 23.219 1 48.22 ? C13 8DV 1101 A 1 HETATM 9 C C14 8DV . . . C 3 -6.44 -12.487 21.522 1 46.2 ? C14 8DV 1101 A 1 HETATM 10 C C15 8DV . . . C 3 -5.542 -11.65 20.948 1 45.92 ? C15 8DV 1101 A 1 HETATM 11 C C16 8DV . . . C 3 -4.936 -10.91 22.032 1 47.25 ? C16 8DV 1101 A 1 HETATM 12 C C17 8DV . . . C 3 -1.899 -6.127 19.757 1 62.96 ? C17 8DV 1101 A 1 HETATM 13 C C18 8DV . . . C 3 -2.833 -5.023 20.236 1 62.94 ? C18 8DV 1101 A 1 HETATM 14 C C19 8DV . . . C 3 -2.531 -5.154 18.769 1 61.57 ? C19 8DV 1101 A 1 HETATM 15 C C20 8DV . . . C 3 -0.089 -6.217 21.97 1 66.08 ? C20 8DV 1101 A 1 HETATM 16 C C21 8DV . . . C 3 0.001 -7.595 22.539 1 65.08 ? C21 8DV 1101 A 1 HETATM 17 C C22 8DV . . . C 3 1.174 -6.687 22.608 1 64.98 ? C22 8DV 1101 A 1 HETATM 18 S S 8DV . . . C 3 -0.135 -5.919 20.192 1 70.79 ? S 8DV 1101 A 1 HETATM 19 C C7 8DV . . . C 3 -2.347 -7.552 19.775 1 55.23 ? C7 8DV 1101 A 1 HETATM 20 C C6 8DV . . . C 3 -2.236 -8.288 18.59 1 51.51 ? C6 8DV 1101 A 1 HETATM 21 N N1 8DV . . . C 3 -2.905 -8.024 20.904 1 51.62 ? N1 8DV 1101 A 1 HETATM 22 C C8 8DV . . . C 3 -3.405 -9.266 20.837 1 47.83 ? C8 8DV 1101 A 1 HETATM 23 C C9 8DV . . . C 3 -4.015 -9.839 22.083 1 45.76 ? C9 8DV 1101 A 1 HETATM 24 N N3 8DV . . . C 3 -6.45 -12.33 22.883 1 49.04 ? N3 8DV 1101 A 1 HETATM 25 C C10 8DV . . . C 3 -3.724 -9.268 23.327 1 44.82 ? C10 8DV 1101 A 1 HETATM 26 N N2 8DV . . . C 3 -3.398 -10.042 19.744 1 45.41 ? N2 8DV 1101 A 1 HETATM 27 C C5 8DV . . . C 3 -2.816 -9.569 18.629 1 47.21 ? C5 8DV 1101 A 1 HETATM 28 N N 8DV . . . C 3 -2.801 -10.406 17.546 1 45.64 ? N 8DV 1101 A 1 HETATM 29 C C 8DV . . . C 3 -1.948 -12.678 18.117 1 49.69 ? C 8DV 1101 A 1 HETATM 30 C C4 8DV . . . C 3 -2.083 -10.023 16.324 1 44.03 ? C4 8DV 1101 A 1 HETATM 31 O O 8DV . . . C 3 -3.012 -12.005 15.269 1 47.91 ? O 8DV 1101 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 85 _model_server_stats.query_time_ms 476 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #