data_5UK9 # _model_server_result.job_id Y8NERA1VkVHPNKj-XG09MQ _model_server_result.datetime_utc '2024-11-22 20:03:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":203}' # _entry.id 5UK9 # _exptl.entry_id 5UK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UK9 _cell.length_a 39.107 _cell.length_b 87.553 _cell.length_c 93.692 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 C O1B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 D MG MG . A MG 202 1_555 J O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 D MG MG . A MG 202 1_555 J O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc5 D MG MG . A MG 202 1_555 J O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 D MG MG . A MG 202 1_555 J O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc7 B OG SER 17 B SER 17 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc8 G O1G GCP . B GCP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc9 G O2B GCP . B GCP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc10 H MG MG . B MG 202 1_555 K O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc11 H MG MG . B MG 202 1_555 K O HOH . B HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc12 H MG MG . B MG 202 1_555 K O HOH . B HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 226 n n C1 C2 GOL sing 227 n n C1 H11 GOL sing 228 n n C1 H12 GOL sing 229 n n O1 HO1 GOL sing 230 n n C2 O2 GOL sing 231 n n C2 C3 GOL sing 232 n n C2 H2 GOL sing 233 n n O2 HO2 GOL sing 234 n n C3 O3 GOL sing 235 n n C3 H31 GOL sing 236 n n C3 H32 GOL sing 237 n n O3 HO3 GOL sing 238 n n # _atom_sites.entry_id 5UK9 _atom_sites.fract_transf_matrix[1][1] 0.025571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 3850 GDP GDP . D 3 MG A 1 202 1 MG MG . E 4 GOL A 1 203 3968 GOL GOL . F 4 GOL A 1 204 3970 GOL GOL . G 5 GCP B 1 201 3834 GCP GCP . H 3 MG B 1 202 1 MG MG . I 4 GOL B 1 203 3969 GOL GOL . J 6 HOH A 1 301 45 HOH HOH . J 6 HOH A 2 302 141 HOH HOH . J 6 HOH A 3 303 142 HOH HOH . J 6 HOH A 4 304 91 HOH HOH . J 6 HOH A 5 305 94 HOH HOH . J 6 HOH A 6 306 69 HOH HOH . J 6 HOH A 7 307 8 HOH HOH . J 6 HOH A 8 308 1 HOH HOH . J 6 HOH A 9 309 59 HOH HOH . J 6 HOH A 10 310 2 HOH HOH . J 6 HOH A 11 311 151 HOH HOH . J 6 HOH A 12 312 177 HOH HOH . J 6 HOH A 13 313 44 HOH HOH . J 6 HOH A 14 314 179 HOH HOH . J 6 HOH A 15 315 99 HOH HOH . J 6 HOH A 16 316 9 HOH HOH . J 6 HOH A 17 317 129 HOH HOH . J 6 HOH A 18 318 222 HOH HOH . J 6 HOH A 19 319 12 HOH HOH . J 6 HOH A 20 320 133 HOH HOH . J 6 HOH A 21 321 46 HOH HOH . J 6 HOH A 22 322 4 HOH HOH . J 6 HOH A 23 323 25 HOH HOH . J 6 HOH A 24 324 54 HOH HOH . J 6 HOH A 25 325 189 HOH HOH . J 6 HOH A 26 326 218 HOH HOH . J 6 HOH A 27 327 58 HOH HOH . J 6 HOH A 28 328 118 HOH HOH . J 6 HOH A 29 329 26 HOH HOH . J 6 HOH A 30 330 195 HOH HOH . J 6 HOH A 31 331 16 HOH HOH . J 6 HOH A 32 332 194 HOH HOH . J 6 HOH A 33 333 28 HOH HOH . J 6 HOH A 34 334 144 HOH HOH . J 6 HOH A 35 335 212 HOH HOH . J 6 HOH A 36 336 10 HOH HOH . J 6 HOH A 37 337 24 HOH HOH . J 6 HOH A 38 338 143 HOH HOH . J 6 HOH A 39 339 154 HOH HOH . J 6 HOH A 40 340 81 HOH HOH . J 6 HOH A 41 341 80 HOH HOH . J 6 HOH A 42 342 51 HOH HOH . J 6 HOH A 43 343 105 HOH HOH . J 6 HOH A 44 344 14 HOH HOH . J 6 HOH A 45 345 3 HOH HOH . J 6 HOH A 46 346 55 HOH HOH . J 6 HOH A 47 347 125 HOH HOH . J 6 HOH A 48 348 205 HOH HOH . J 6 HOH A 49 349 60 HOH HOH . J 6 HOH A 50 350 219 HOH HOH . J 6 HOH A 51 351 41 HOH HOH . J 6 HOH A 52 352 127 HOH HOH . J 6 HOH A 53 353 84 HOH HOH . J 6 HOH A 54 354 136 HOH HOH . J 6 HOH A 55 355 39 HOH HOH . J 6 HOH A 56 356 148 HOH HOH . J 6 HOH A 57 357 35 HOH HOH . J 6 HOH A 58 358 74 HOH HOH . J 6 HOH A 59 359 67 HOH HOH . J 6 HOH A 60 360 34 HOH HOH . J 6 HOH A 61 361 96 HOH HOH . J 6 HOH A 62 362 64 HOH HOH . J 6 HOH A 63 363 135 HOH HOH . J 6 HOH A 64 364 145 HOH HOH . J 6 HOH A 65 365 30 HOH HOH . J 6 HOH A 66 366 87 HOH HOH . J 6 HOH A 67 367 68 HOH HOH . J 6 HOH A 68 368 115 HOH HOH . J 6 HOH A 69 369 103 HOH HOH . J 6 HOH A 70 370 40 HOH HOH . J 6 HOH A 71 371 52 HOH HOH . J 6 HOH A 72 372 11 HOH HOH . J 6 HOH A 73 373 47 HOH HOH . J 6 HOH A 74 374 76 HOH HOH . J 6 HOH A 75 375 121 HOH HOH . J 6 HOH A 76 376 138 HOH HOH . J 6 HOH A 77 377 20 HOH HOH . J 6 HOH A 78 378 42 HOH HOH . J 6 HOH A 79 379 197 HOH HOH . J 6 HOH A 80 380 66 HOH HOH . J 6 HOH A 81 381 214 HOH HOH . J 6 HOH A 82 382 147 HOH HOH . J 6 HOH A 83 383 191 HOH HOH . J 6 HOH A 84 384 77 HOH HOH . J 6 HOH A 85 385 110 HOH HOH . J 6 HOH A 86 386 108 HOH HOH . J 6 HOH A 87 387 139 HOH HOH . J 6 HOH A 88 388 213 HOH HOH . J 6 HOH A 89 389 176 HOH HOH . J 6 HOH A 90 390 223 HOH HOH . J 6 HOH A 91 391 210 HOH HOH . J 6 HOH A 92 392 175 HOH HOH . J 6 HOH A 93 393 72 HOH HOH . J 6 HOH A 94 394 217 HOH HOH . J 6 HOH A 95 395 220 HOH HOH . J 6 HOH A 96 396 85 HOH HOH . J 6 HOH A 97 397 104 HOH HOH . J 6 HOH A 98 398 190 HOH HOH . J 6 HOH A 99 399 193 HOH HOH . J 6 HOH A 100 400 109 HOH HOH . J 6 HOH A 101 401 152 HOH HOH . J 6 HOH A 102 402 123 HOH HOH . J 6 HOH A 103 403 134 HOH HOH . J 6 HOH A 104 404 128 HOH HOH . J 6 HOH A 105 405 122 HOH HOH . K 6 HOH B 1 301 164 HOH HOH . K 6 HOH B 2 302 57 HOH HOH . K 6 HOH B 3 303 13 HOH HOH . K 6 HOH B 4 304 86 HOH HOH . K 6 HOH B 5 305 211 HOH HOH . K 6 HOH B 6 306 89 HOH HOH . K 6 HOH B 7 307 106 HOH HOH . K 6 HOH B 8 308 65 HOH HOH . K 6 HOH B 9 309 7 HOH HOH . K 6 HOH B 10 310 63 HOH HOH . K 6 HOH B 11 311 120 HOH HOH . K 6 HOH B 12 312 187 HOH HOH . K 6 HOH B 13 313 71 HOH HOH . K 6 HOH B 14 314 185 HOH HOH . K 6 HOH B 15 315 97 HOH HOH . K 6 HOH B 16 316 183 HOH HOH . K 6 HOH B 17 317 102 HOH HOH . K 6 HOH B 18 318 29 HOH HOH . K 6 HOH B 19 319 184 HOH HOH . K 6 HOH B 20 320 209 HOH HOH . K 6 HOH B 21 321 23 HOH HOH . K 6 HOH B 22 322 186 HOH HOH . K 6 HOH B 23 323 6 HOH HOH . K 6 HOH B 24 324 22 HOH HOH . K 6 HOH B 25 325 15 HOH HOH . K 6 HOH B 26 326 70 HOH HOH . K 6 HOH B 27 327 107 HOH HOH . K 6 HOH B 28 328 196 HOH HOH . K 6 HOH B 29 329 92 HOH HOH . K 6 HOH B 30 330 73 HOH HOH . K 6 HOH B 31 331 56 HOH HOH . K 6 HOH B 32 332 31 HOH HOH . K 6 HOH B 33 333 158 HOH HOH . K 6 HOH B 34 334 33 HOH HOH . K 6 HOH B 35 335 116 HOH HOH . K 6 HOH B 36 336 82 HOH HOH . K 6 HOH B 37 337 169 HOH HOH . K 6 HOH B 38 338 17 HOH HOH . K 6 HOH B 39 339 43 HOH HOH . K 6 HOH B 40 340 49 HOH HOH . K 6 HOH B 41 341 167 HOH HOH . K 6 HOH B 42 342 111 HOH HOH . K 6 HOH B 43 343 95 HOH HOH . K 6 HOH B 44 344 180 HOH HOH . K 6 HOH B 45 345 202 HOH HOH . K 6 HOH B 46 346 162 HOH HOH . K 6 HOH B 47 347 19 HOH HOH . K 6 HOH B 48 348 5 HOH HOH . K 6 HOH B 49 349 38 HOH HOH . K 6 HOH B 50 350 170 HOH HOH . K 6 HOH B 51 351 208 HOH HOH . K 6 HOH B 52 352 161 HOH HOH . K 6 HOH B 53 353 166 HOH HOH . K 6 HOH B 54 354 201 HOH HOH . K 6 HOH B 55 355 79 HOH HOH . K 6 HOH B 56 356 182 HOH HOH . K 6 HOH B 57 357 132 HOH HOH . K 6 HOH B 58 358 157 HOH HOH . K 6 HOH B 59 359 215 HOH HOH . K 6 HOH B 60 360 113 HOH HOH . K 6 HOH B 61 361 50 HOH HOH . K 6 HOH B 62 362 126 HOH HOH . K 6 HOH B 63 363 98 HOH HOH . K 6 HOH B 64 364 171 HOH HOH . K 6 HOH B 65 365 18 HOH HOH . K 6 HOH B 66 366 150 HOH HOH . K 6 HOH B 67 367 216 HOH HOH . K 6 HOH B 68 368 53 HOH HOH . K 6 HOH B 69 369 137 HOH HOH . K 6 HOH B 70 370 101 HOH HOH . K 6 HOH B 71 371 27 HOH HOH . K 6 HOH B 72 372 117 HOH HOH . K 6 HOH B 73 373 93 HOH HOH . K 6 HOH B 74 374 188 HOH HOH . K 6 HOH B 75 375 100 HOH HOH . K 6 HOH B 76 376 61 HOH HOH . K 6 HOH B 77 377 36 HOH HOH . K 6 HOH B 78 378 88 HOH HOH . K 6 HOH B 79 379 221 HOH HOH . K 6 HOH B 80 380 112 HOH HOH . K 6 HOH B 81 381 37 HOH HOH . K 6 HOH B 82 382 75 HOH HOH . K 6 HOH B 83 383 21 HOH HOH . K 6 HOH B 84 384 206 HOH HOH . K 6 HOH B 85 385 160 HOH HOH . K 6 HOH B 86 386 48 HOH HOH . K 6 HOH B 87 387 83 HOH HOH . K 6 HOH B 88 388 131 HOH HOH . K 6 HOH B 89 389 174 HOH HOH . K 6 HOH B 90 390 173 HOH HOH . K 6 HOH B 91 391 163 HOH HOH . K 6 HOH B 92 392 204 HOH HOH . K 6 HOH B 93 393 172 HOH HOH . K 6 HOH B 94 394 114 HOH HOH . K 6 HOH B 95 395 199 HOH HOH . K 6 HOH B 96 396 124 HOH HOH . K 6 HOH B 97 397 78 HOH HOH . K 6 HOH B 98 398 130 HOH HOH . K 6 HOH B 99 399 207 HOH HOH . K 6 HOH B 100 400 198 HOH HOH . K 6 HOH B 101 401 168 HOH HOH . K 6 HOH B 102 402 165 HOH HOH . K 6 HOH B 103 403 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -24.552 106.162 16.36 1 35.92 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . I 4 -25.358 105.077 15.978 1 34.14 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . I 4 -23.106 105.642 16.533 1 39.15 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . I 4 -22.243 106.209 15.612 1 56.88 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . I 4 -23.199 104.125 16.356 1 34.13 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . I 4 -23.985 103.667 17.42 1 35.73 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #