data_5UKQ # _model_server_result.job_id lFZc63R0QJzMkuMgpgFFPQ _model_server_result.datetime_utc '2024-11-16 17:31:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ukq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5UKQ # _exptl.entry_id 5UKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UKQ _cell.length_a 70.074 _cell.length_b 79.217 _cell.length_c 184.745 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 152 H CYS 140 1_555 A SG CYS 208 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 22 L CYS 23 1_555 B SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 138 L CYS 134 1_555 B SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5UKQ _atom_sites.fract_transf_matrix[1][1] 0.014271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 301 1 GOL GOL . D 4 HOH H 1 301 162 HOH HOH . D 4 HOH H 2 302 13 HOH HOH . D 4 HOH H 3 303 8 HOH HOH . D 4 HOH H 4 304 27 HOH HOH . D 4 HOH H 5 305 1 HOH HOH . D 4 HOH H 6 306 5 HOH HOH . D 4 HOH H 7 307 114 HOH HOH . D 4 HOH H 8 308 140 HOH HOH . D 4 HOH H 9 309 131 HOH HOH . D 4 HOH H 10 310 201 HOH HOH . D 4 HOH H 11 311 45 HOH HOH . D 4 HOH H 12 312 26 HOH HOH . D 4 HOH H 13 313 149 HOH HOH . D 4 HOH H 14 314 35 HOH HOH . D 4 HOH H 15 315 55 HOH HOH . D 4 HOH H 16 316 143 HOH HOH . D 4 HOH H 17 317 247 HOH HOH . D 4 HOH H 18 318 200 HOH HOH . D 4 HOH H 19 319 71 HOH HOH . D 4 HOH H 20 320 10 HOH HOH . D 4 HOH H 21 321 109 HOH HOH . D 4 HOH H 22 322 66 HOH HOH . D 4 HOH H 23 323 151 HOH HOH . D 4 HOH H 24 324 188 HOH HOH . D 4 HOH H 25 325 226 HOH HOH . D 4 HOH H 26 326 117 HOH HOH . D 4 HOH H 27 327 255 HOH HOH . D 4 HOH H 28 328 102 HOH HOH . D 4 HOH H 29 329 33 HOH HOH . D 4 HOH H 30 330 195 HOH HOH . D 4 HOH H 31 331 43 HOH HOH . D 4 HOH H 32 332 261 HOH HOH . D 4 HOH H 33 333 41 HOH HOH . D 4 HOH H 34 334 185 HOH HOH . D 4 HOH H 35 335 123 HOH HOH . D 4 HOH H 36 336 152 HOH HOH . D 4 HOH H 37 337 97 HOH HOH . D 4 HOH H 38 338 138 HOH HOH . D 4 HOH H 39 339 69 HOH HOH . D 4 HOH H 40 340 31 HOH HOH . D 4 HOH H 41 341 21 HOH HOH . D 4 HOH H 42 342 96 HOH HOH . D 4 HOH H 43 343 118 HOH HOH . D 4 HOH H 44 344 56 HOH HOH . D 4 HOH H 45 345 115 HOH HOH . D 4 HOH H 46 346 242 HOH HOH . D 4 HOH H 47 347 89 HOH HOH . D 4 HOH H 48 348 147 HOH HOH . D 4 HOH H 49 349 182 HOH HOH . D 4 HOH H 50 350 19 HOH HOH . D 4 HOH H 51 351 113 HOH HOH . D 4 HOH H 52 352 20 HOH HOH . D 4 HOH H 53 353 61 HOH HOH . D 4 HOH H 54 354 49 HOH HOH . D 4 HOH H 55 355 216 HOH HOH . D 4 HOH H 56 356 81 HOH HOH . D 4 HOH H 57 357 106 HOH HOH . D 4 HOH H 58 358 133 HOH HOH . D 4 HOH H 59 359 126 HOH HOH . D 4 HOH H 60 360 178 HOH HOH . D 4 HOH H 61 361 76 HOH HOH . D 4 HOH H 62 362 183 HOH HOH . D 4 HOH H 63 363 236 HOH HOH . D 4 HOH H 64 364 46 HOH HOH . D 4 HOH H 65 365 17 HOH HOH . D 4 HOH H 66 366 163 HOH HOH . D 4 HOH H 67 367 64 HOH HOH . D 4 HOH H 68 368 74 HOH HOH . D 4 HOH H 69 369 44 HOH HOH . D 4 HOH H 70 370 204 HOH HOH . D 4 HOH H 71 371 93 HOH HOH . D 4 HOH H 72 372 134 HOH HOH . D 4 HOH H 73 373 166 HOH HOH . D 4 HOH H 74 374 84 HOH HOH . D 4 HOH H 75 375 219 HOH HOH . D 4 HOH H 76 376 243 HOH HOH . D 4 HOH H 77 377 104 HOH HOH . D 4 HOH H 78 378 37 HOH HOH . D 4 HOH H 79 379 79 HOH HOH . D 4 HOH H 80 380 82 HOH HOH . D 4 HOH H 81 381 83 HOH HOH . D 4 HOH H 82 382 233 HOH HOH . D 4 HOH H 83 383 206 HOH HOH . D 4 HOH H 84 384 120 HOH HOH . D 4 HOH H 85 385 132 HOH HOH . D 4 HOH H 86 386 51 HOH HOH . D 4 HOH H 87 387 205 HOH HOH . D 4 HOH H 88 388 77 HOH HOH . D 4 HOH H 89 389 68 HOH HOH . D 4 HOH H 90 390 119 HOH HOH . D 4 HOH H 91 391 24 HOH HOH . D 4 HOH H 92 392 72 HOH HOH . D 4 HOH H 93 393 169 HOH HOH . D 4 HOH H 94 394 203 HOH HOH . D 4 HOH H 95 395 253 HOH HOH . D 4 HOH H 96 396 244 HOH HOH . D 4 HOH H 97 397 88 HOH HOH . D 4 HOH H 98 398 4 HOH HOH . D 4 HOH H 99 399 262 HOH HOH . D 4 HOH H 100 400 208 HOH HOH . D 4 HOH H 101 401 258 HOH HOH . D 4 HOH H 102 402 263 HOH HOH . D 4 HOH H 103 403 103 HOH HOH . D 4 HOH H 104 404 254 HOH HOH . D 4 HOH H 105 405 259 HOH HOH . D 4 HOH H 106 406 176 HOH HOH . D 4 HOH H 107 407 194 HOH HOH . D 4 HOH H 108 408 196 HOH HOH . D 4 HOH H 109 409 189 HOH HOH . D 4 HOH H 110 410 184 HOH HOH . D 4 HOH H 111 411 179 HOH HOH . D 4 HOH H 112 412 237 HOH HOH . E 4 HOH L 1 401 23 HOH HOH . E 4 HOH L 2 402 260 HOH HOH . E 4 HOH L 3 403 155 HOH HOH . E 4 HOH L 4 404 168 HOH HOH . E 4 HOH L 5 405 121 HOH HOH . E 4 HOH L 6 406 101 HOH HOH . E 4 HOH L 7 407 127 HOH HOH . E 4 HOH L 8 408 54 HOH HOH . E 4 HOH L 9 409 32 HOH HOH . E 4 HOH L 10 410 48 HOH HOH . E 4 HOH L 11 411 248 HOH HOH . E 4 HOH L 12 412 110 HOH HOH . E 4 HOH L 13 413 63 HOH HOH . E 4 HOH L 14 414 14 HOH HOH . E 4 HOH L 15 415 34 HOH HOH . E 4 HOH L 16 416 211 HOH HOH . E 4 HOH L 17 417 99 HOH HOH . E 4 HOH L 18 418 145 HOH HOH . E 4 HOH L 19 419 186 HOH HOH . E 4 HOH L 20 420 7 HOH HOH . E 4 HOH L 21 421 95 HOH HOH . E 4 HOH L 22 422 6 HOH HOH . E 4 HOH L 23 423 16 HOH HOH . E 4 HOH L 24 424 177 HOH HOH . E 4 HOH L 25 425 87 HOH HOH . E 4 HOH L 26 426 251 HOH HOH . E 4 HOH L 27 427 141 HOH HOH . E 4 HOH L 28 428 53 HOH HOH . E 4 HOH L 29 429 98 HOH HOH . E 4 HOH L 30 430 9 HOH HOH . E 4 HOH L 31 431 209 HOH HOH . E 4 HOH L 32 432 22 HOH HOH . E 4 HOH L 33 433 105 HOH HOH . E 4 HOH L 34 434 18 HOH HOH . E 4 HOH L 35 435 213 HOH HOH . E 4 HOH L 36 436 129 HOH HOH . E 4 HOH L 37 437 3 HOH HOH . E 4 HOH L 38 438 58 HOH HOH . E 4 HOH L 39 439 227 HOH HOH . E 4 HOH L 40 440 148 HOH HOH . E 4 HOH L 41 441 94 HOH HOH . E 4 HOH L 42 442 11 HOH HOH . E 4 HOH L 43 443 187 HOH HOH . E 4 HOH L 44 444 73 HOH HOH . E 4 HOH L 45 445 40 HOH HOH . E 4 HOH L 46 446 15 HOH HOH . E 4 HOH L 47 447 197 HOH HOH . E 4 HOH L 48 448 139 HOH HOH . E 4 HOH L 49 449 12 HOH HOH . E 4 HOH L 50 450 171 HOH HOH . E 4 HOH L 51 451 220 HOH HOH . E 4 HOH L 52 452 158 HOH HOH . E 4 HOH L 53 453 38 HOH HOH . E 4 HOH L 54 454 62 HOH HOH . E 4 HOH L 55 455 192 HOH HOH . E 4 HOH L 56 456 90 HOH HOH . E 4 HOH L 57 457 30 HOH HOH . E 4 HOH L 58 458 234 HOH HOH . E 4 HOH L 59 459 100 HOH HOH . E 4 HOH L 60 460 111 HOH HOH . E 4 HOH L 61 461 75 HOH HOH . E 4 HOH L 62 462 28 HOH HOH . E 4 HOH L 63 463 124 HOH HOH . E 4 HOH L 64 464 67 HOH HOH . E 4 HOH L 65 465 150 HOH HOH . E 4 HOH L 66 466 154 HOH HOH . E 4 HOH L 67 467 39 HOH HOH . E 4 HOH L 68 468 50 HOH HOH . E 4 HOH L 69 469 65 HOH HOH . E 4 HOH L 70 470 25 HOH HOH . E 4 HOH L 71 471 42 HOH HOH . E 4 HOH L 72 472 238 HOH HOH . E 4 HOH L 73 473 199 HOH HOH . E 4 HOH L 74 474 130 HOH HOH . E 4 HOH L 75 475 108 HOH HOH . E 4 HOH L 76 476 57 HOH HOH . E 4 HOH L 77 477 160 HOH HOH . E 4 HOH L 78 478 92 HOH HOH . E 4 HOH L 79 479 112 HOH HOH . E 4 HOH L 80 480 36 HOH HOH . E 4 HOH L 81 481 223 HOH HOH . E 4 HOH L 82 482 60 HOH HOH . E 4 HOH L 83 483 52 HOH HOH . E 4 HOH L 84 484 207 HOH HOH . E 4 HOH L 85 485 214 HOH HOH . E 4 HOH L 86 486 2 HOH HOH . E 4 HOH L 87 487 157 HOH HOH . E 4 HOH L 88 488 252 HOH HOH . E 4 HOH L 89 489 59 HOH HOH . E 4 HOH L 90 490 135 HOH HOH . E 4 HOH L 91 491 164 HOH HOH . E 4 HOH L 92 492 125 HOH HOH . E 4 HOH L 93 493 78 HOH HOH . E 4 HOH L 94 494 47 HOH HOH . E 4 HOH L 95 495 198 HOH HOH . E 4 HOH L 96 496 191 HOH HOH . E 4 HOH L 97 497 70 HOH HOH . E 4 HOH L 98 498 136 HOH HOH . E 4 HOH L 99 499 245 HOH HOH . E 4 HOH L 100 500 241 HOH HOH . E 4 HOH L 101 501 29 HOH HOH . E 4 HOH L 102 502 116 HOH HOH . E 4 HOH L 103 503 229 HOH HOH . E 4 HOH L 104 504 224 HOH HOH . E 4 HOH L 105 505 85 HOH HOH . E 4 HOH L 106 506 231 HOH HOH . E 4 HOH L 107 507 146 HOH HOH . E 4 HOH L 108 508 156 HOH HOH . E 4 HOH L 109 509 172 HOH HOH . E 4 HOH L 110 510 128 HOH HOH . E 4 HOH L 111 511 142 HOH HOH . E 4 HOH L 112 512 137 HOH HOH . E 4 HOH L 113 513 153 HOH HOH . E 4 HOH L 114 514 122 HOH HOH . E 4 HOH L 115 515 159 HOH HOH . E 4 HOH L 116 516 144 HOH HOH . E 4 HOH L 117 517 230 HOH HOH . E 4 HOH L 118 518 173 HOH HOH . E 4 HOH L 119 519 212 HOH HOH . E 4 HOH L 120 520 107 HOH HOH . E 4 HOH L 121 521 246 HOH HOH . E 4 HOH L 122 522 222 HOH HOH . E 4 HOH L 123 523 175 HOH HOH . E 4 HOH L 124 524 190 HOH HOH . E 4 HOH L 125 525 235 HOH HOH . E 4 HOH L 126 526 215 HOH HOH . E 4 HOH L 127 527 239 HOH HOH . E 4 HOH L 128 528 167 HOH HOH . E 4 HOH L 129 529 250 HOH HOH . E 4 HOH L 130 530 180 HOH HOH . E 4 HOH L 131 531 80 HOH HOH . E 4 HOH L 132 532 174 HOH HOH . E 4 HOH L 133 533 257 HOH HOH . E 4 HOH L 134 534 210 HOH HOH . E 4 HOH L 135 535 181 HOH HOH . E 4 HOH L 136 536 161 HOH HOH . E 4 HOH L 137 537 225 HOH HOH . E 4 HOH L 138 538 202 HOH HOH . E 4 HOH L 139 539 165 HOH HOH . E 4 HOH L 140 540 193 HOH HOH . E 4 HOH L 141 541 228 HOH HOH . E 4 HOH L 142 542 170 HOH HOH . E 4 HOH L 143 543 249 HOH HOH . E 4 HOH L 144 544 221 HOH HOH . E 4 HOH L 145 545 86 HOH HOH . E 4 HOH L 146 546 217 HOH HOH . E 4 HOH L 147 547 91 HOH HOH . E 4 HOH L 148 548 232 HOH HOH . E 4 HOH L 149 549 240 HOH HOH . E 4 HOH L 150 550 256 HOH HOH . E 4 HOH L 151 551 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 19.185 11.625 -32.851 1 58.11 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . C 3 18.884 10.26 -33.013 1 51.48 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . C 3 19.732 11.752 -31.447 1 58.34 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . C 3 19.917 10.44 -30.977 1 55.26 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . C 3 21.033 12.56 -31.443 1 65.12 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . C 3 21.914 12.17 -32.476 1 66.33 ? O3 GOL 301 L 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #