data_5UKW # _model_server_result.job_id Ocnvi52f-jreKAIYT9Qjug _model_server_result.datetime_utc '2024-12-12 14:01:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ukw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5UKW # _exptl.entry_id 5UKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UKW _cell.length_a 59.099 _cell.length_b 177.817 _cell.length_c 216.47 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 88.9085 108.235 3 'crystal symmetry operation' 11_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 29.5495 0 108.235 4 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 29.5495 88.9085 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 254 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 277 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 271 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 294 _struct_conn.ptnr2_symmetry 14_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.007 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id BG6 _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-beta-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BG6 sing 70 n n C1 O1 BG6 sing 71 n n C1 O5 BG6 sing 72 n n C1 H1 BG6 sing 73 n n C2 C3 BG6 sing 74 n n C2 O2 BG6 sing 75 n n C2 H2 BG6 sing 76 n n O1 HO1 BG6 sing 77 n n O5 C5 BG6 sing 78 n n C3 C4 BG6 sing 79 n n C3 O3 BG6 sing 80 n n C3 H3 BG6 sing 81 n n O2 HO2 BG6 sing 82 n n C4 C5 BG6 sing 83 n n C4 O4 BG6 sing 84 n n C4 H4 BG6 sing 85 n n O3 HO3 BG6 sing 86 n n C5 C6 BG6 sing 87 n n C5 H5 BG6 sing 88 n n O4 HO4 BG6 sing 89 n n C6 O6 BG6 sing 90 n n C6 H61 BG6 sing 91 n n C6 H62 BG6 sing 92 n n O6 P BG6 sing 93 n n P O1P BG6 sing 94 n n P O2P BG6 sing 95 n n P O3P BG6 doub 96 n n O1P H1O1 BG6 sing 97 n n O2P H2O2 BG6 sing 98 n n # _pdbx_chem_comp_identifier.comp_id BG6 _pdbx_chem_comp_identifier.identifier b-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5UKW _atom_sites.fract_transf_matrix[1][1] 0.016921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BG6 A 1 601 1508 BG6 BG6 . C 3 GOL A 1 602 1 GOL GOL . D 4 HOH A 1 701 19 HOH HOH . D 4 HOH A 2 702 18 HOH HOH . D 4 HOH A 3 703 17 HOH HOH . D 4 HOH A 4 704 13 HOH HOH . D 4 HOH A 5 705 11 HOH HOH . D 4 HOH A 6 706 10 HOH HOH . D 4 HOH A 7 707 20 HOH HOH . D 4 HOH A 8 708 12 HOH HOH . D 4 HOH A 9 709 2 HOH HOH . D 4 HOH A 10 710 7 HOH HOH . D 4 HOH A 11 711 1 HOH HOH . D 4 HOH A 12 712 9 HOH HOH . D 4 HOH A 13 713 8 HOH HOH . D 4 HOH A 14 714 5 HOH HOH . D 4 HOH A 15 715 16 HOH HOH . D 4 HOH A 16 716 3 HOH HOH . D 4 HOH A 17 717 4 HOH HOH . D 4 HOH A 18 718 6 HOH HOH . D 4 HOH A 19 719 14 HOH HOH . D 4 HOH A 20 720 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BG6 . . . B 2 28.561 19.293 26.351 1 51.71 ? C1 BG6 601 A 1 HETATM 2 C C2 BG6 . . . B 2 30.044 19.509 26.454 1 50.67 ? C2 BG6 601 A 1 HETATM 3 O O1 BG6 . . . B 2 27.992 20.45 26.047 1 45.84 ? O1 BG6 601 A 1 HETATM 4 O O5 BG6 . . . B 2 27.977 18.919 27.653 1 53.28 ? O5 BG6 601 A 1 HETATM 5 C C3 BG6 . . . B 2 30.699 18.316 26.971 1 48.59 ? C3 BG6 601 A 1 HETATM 6 O O2 BG6 . . . B 2 30.539 19.743 25.143 1 49.59 ? O2 BG6 601 A 1 HETATM 7 C C4 BG6 . . . B 2 30.183 18.031 28.321 1 53.3 ? C4 BG6 601 A 1 HETATM 8 O O3 BG6 . . . B 2 32.089 18.585 27.092 1 46.22 ? O3 BG6 601 A 1 HETATM 9 C C5 BG6 . . . B 2 28.689 17.824 28.295 1 53.74 ? C5 BG6 601 A 1 HETATM 10 O O4 BG6 . . . B 2 30.755 16.819 28.744 1 52.86 ? O4 BG6 601 A 1 HETATM 11 C C6 BG6 . . . B 2 28.196 17.699 29.69 1 53.17 ? C6 BG6 601 A 1 HETATM 12 O O6 BG6 . . . B 2 26.837 17.417 29.574 1 53.35 ? O6 BG6 601 A 1 HETATM 13 P P BG6 . . . B 2 26.124 16.454 30.635 1 51.74 ? P BG6 601 A 1 HETATM 14 O O1P BG6 . . . B 2 26.459 16.893 31.965 1 48.49 ? O1P BG6 601 A 1 HETATM 15 O O2P BG6 . . . B 2 24.691 16.479 30.444 1 55.27 -1 O2P BG6 601 A 1 HETATM 16 O O3P BG6 . . . B 2 26.528 15.082 30.424 1 58.93 ? O3P BG6 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 444 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 16 #