data_5UKY # _model_server_result.job_id kLwcwv6uXZxuHlV-5mIhQw _model_server_result.datetime_utc '2024-11-05 21:13:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5UKY # _exptl.entry_id 5UKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.64 _cell.angle_gamma 90 _cell.entry_id 5UKY _cell.length_a 23.25 _cell.length_b 74.534 _cell.length_c 44.539 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OXT LEU 74 A LEU 310 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc2 C K K . A K 401 1_555 E O3 PG4 . A PG4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc3 C K K . A K 401 1_555 E O4 PG4 . A PG4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc4 C K K . A K 401 1_555 E O5 PG4 . A PG4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc5 C K K . A K 401 1_555 E O2 PG4 . A PG4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc6 C K K . A K 401 1_555 E O1 PG4 . A PG4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc7 C K K . A K 401 2_656 B O ARG 40 B ARG 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 54 n n C1 C2 EDO sing 55 n n C1 H11 EDO sing 56 n n C1 H12 EDO sing 57 n n O1 HO1 EDO sing 58 n n C2 O2 EDO sing 59 n n C2 H21 EDO sing 60 n n C2 H22 EDO sing 61 n n O2 HO2 EDO sing 62 n n # _atom_sites.entry_id 5UKY _atom_sites.fract_transf_matrix[1][1] 0.043011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005005 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022604 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 401 1 K K . D 3 EDO A 1 402 1 EDO EDO . E 4 PG4 A 1 403 2 PG4 PG4 . F 5 PGE A 1 404 3 PGE PGE . G 6 PEG A 1 405 4 PEG PEG . H 3 EDO A 1 406 6 EDO EDO . I 3 EDO B 1 401 5 EDO EDO . J 7 HOH A 1 501 3 HOH HOH . J 7 HOH A 2 502 14 HOH HOH . J 7 HOH A 3 503 15 HOH HOH . J 7 HOH A 4 504 19 HOH HOH . J 7 HOH A 5 505 21 HOH HOH . J 7 HOH A 6 506 12 HOH HOH . J 7 HOH A 7 507 16 HOH HOH . J 7 HOH A 8 508 9 HOH HOH . J 7 HOH A 9 509 17 HOH HOH . J 7 HOH A 10 510 10 HOH HOH . J 7 HOH A 11 511 4 HOH HOH . J 7 HOH A 12 512 6 HOH HOH . J 7 HOH A 13 513 25 HOH HOH . J 7 HOH A 14 514 2 HOH HOH . J 7 HOH A 15 515 23 HOH HOH . K 7 HOH B 1 501 20 HOH HOH . K 7 HOH B 2 502 26 HOH HOH . K 7 HOH B 3 503 1 HOH HOH . K 7 HOH B 4 504 11 HOH HOH . K 7 HOH B 5 505 13 HOH HOH . K 7 HOH B 6 506 18 HOH HOH . K 7 HOH B 7 507 24 HOH HOH . K 7 HOH B 8 508 27 HOH HOH . K 7 HOH B 9 509 5 HOH HOH . K 7 HOH B 10 510 8 HOH HOH . K 7 HOH B 11 511 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 4.65 1.436 24.129 1 56.86 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . D 3 6.055 1.324 24.295 1 61.93 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . D 3 4.366 1.324 22.65 1 57.86 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . D 3 3.102 1.924 22.336 1 58.37 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #