data_5ULL # _model_server_result.job_id iVEY7F6p9Ti17iHjKqkMTA _model_server_result.datetime_utc '2024-11-16 10:09:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ull # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":139}' # _entry.id 5ULL # _exptl.entry_id 5ULL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ULL _cell.length_a 61.68 _cell.length_b 61.68 _cell.length_c 70.05 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ULL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5ULL _atom_sites.fract_transf_matrix[1][1] 0.016213 _atom_sites.fract_transf_matrix[1][2] 0.00936 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 139 139 FMN FMN . C 3 HOH A 1 144 144 HOH HOH . C 3 HOH A 2 147 147 HOH HOH . C 3 HOH A 3 148 148 HOH HOH . C 3 HOH A 4 149 149 HOH HOH . C 3 HOH A 5 150 150 HOH HOH . C 3 HOH A 6 151 151 HOH HOH . C 3 HOH A 7 155 155 HOH HOH . C 3 HOH A 8 159 159 HOH HOH . C 3 HOH A 9 161 161 HOH HOH . C 3 HOH A 10 165 165 HOH HOH . C 3 HOH A 11 167 167 HOH HOH . C 3 HOH A 12 178 178 HOH HOH . C 3 HOH A 13 179 179 HOH HOH . C 3 HOH A 14 182 182 HOH HOH . C 3 HOH A 15 187 187 HOH HOH . C 3 HOH A 16 188 188 HOH HOH . C 3 HOH A 17 189 189 HOH HOH . C 3 HOH A 18 192 192 HOH HOH . C 3 HOH A 19 193 193 HOH HOH . C 3 HOH A 20 194 194 HOH HOH . C 3 HOH A 21 202 202 HOH HOH . C 3 HOH A 22 205 205 HOH HOH . C 3 HOH A 23 208 208 HOH HOH . C 3 HOH A 24 214 214 HOH HOH . C 3 HOH A 25 215 215 HOH HOH . C 3 HOH A 26 219 219 HOH HOH . C 3 HOH A 27 220 220 HOH HOH . C 3 HOH A 28 222 222 HOH HOH . C 3 HOH A 29 224 224 HOH HOH . C 3 HOH A 30 225 225 HOH HOH . C 3 HOH A 31 228 228 HOH HOH . C 3 HOH A 32 230 230 HOH HOH . C 3 HOH A 33 231 231 HOH HOH . C 3 HOH A 34 233 233 HOH HOH . C 3 HOH A 35 235 235 HOH HOH . C 3 HOH A 36 238 238 HOH HOH . C 3 HOH A 37 239 239 HOH HOH . C 3 HOH A 38 244 244 HOH HOH . C 3 HOH A 39 245 245 HOH HOH . C 3 HOH A 40 246 246 HOH HOH . C 3 HOH A 41 247 247 HOH HOH . C 3 HOH A 42 248 248 HOH HOH . C 3 HOH A 43 249 249 HOH HOH . C 3 HOH A 44 250 250 HOH HOH . C 3 HOH A 45 251 251 HOH HOH . C 3 HOH A 46 252 252 HOH HOH . C 3 HOH A 47 253 253 HOH HOH . C 3 HOH A 48 254 254 HOH HOH . C 3 HOH A 49 255 255 HOH HOH . C 3 HOH A 50 262 262 HOH HOH . C 3 HOH A 51 265 265 HOH HOH . C 3 HOH A 52 266 266 HOH HOH . C 3 HOH A 53 270 270 HOH HOH . C 3 HOH A 54 271 271 HOH HOH . C 3 HOH A 55 272 272 HOH HOH . C 3 HOH A 56 273 273 HOH HOH . C 3 HOH A 57 275 275 HOH HOH . C 3 HOH A 58 276 276 HOH HOH . C 3 HOH A 59 278 278 HOH HOH . C 3 HOH A 60 279 279 HOH HOH . C 3 HOH A 61 281 281 HOH HOH . C 3 HOH A 62 282 282 HOH HOH . C 3 HOH A 63 283 283 HOH HOH . C 3 HOH A 64 284 284 HOH HOH . C 3 HOH A 65 286 286 HOH HOH . C 3 HOH A 66 287 287 HOH HOH . C 3 HOH A 67 288 288 HOH HOH . C 3 HOH A 68 291 291 HOH HOH . C 3 HOH A 69 292 292 HOH HOH . C 3 HOH A 70 293 293 HOH HOH . C 3 HOH A 71 297 297 HOH HOH . C 3 HOH A 72 299 299 HOH HOH . C 3 HOH A 73 304 304 HOH HOH . C 3 HOH A 74 305 305 HOH HOH . C 3 HOH A 75 330 330 HOH HOH . C 3 HOH A 76 353 353 HOH HOH . C 3 HOH A 77 357 357 HOH HOH . C 3 HOH A 78 376 376 HOH HOH . C 3 HOH A 79 377 377 HOH HOH . C 3 HOH A 80 378 378 HOH HOH . C 3 HOH A 81 379 379 HOH HOH . C 3 HOH A 82 380 380 HOH HOH . C 3 HOH A 83 381 381 HOH HOH . C 3 HOH A 84 382 382 HOH HOH . C 3 HOH A 85 383 383 HOH HOH . C 3 HOH A 86 384 384 HOH HOH . C 3 HOH A 87 385 385 HOH HOH . C 3 HOH A 88 386 386 HOH HOH . C 3 HOH A 89 387 387 HOH HOH . C 3 HOH A 90 388 388 HOH HOH . C 3 HOH A 91 389 389 HOH HOH . C 3 HOH A 92 390 390 HOH HOH . C 3 HOH A 93 391 391 HOH HOH . C 3 HOH A 94 392 392 HOH HOH . C 3 HOH A 95 393 393 HOH HOH . C 3 HOH A 96 394 394 HOH HOH . C 3 HOH A 97 395 395 HOH HOH . C 3 HOH A 98 396 396 HOH HOH . C 3 HOH A 99 400 400 HOH HOH . C 3 HOH A 100 401 401 HOH HOH . C 3 HOH A 101 402 402 HOH HOH . C 3 HOH A 102 403 403 HOH HOH . C 3 HOH A 103 404 404 HOH HOH . C 3 HOH A 104 405 405 HOH HOH . C 3 HOH A 105 406 406 HOH HOH . C 3 HOH A 106 407 407 HOH HOH . C 3 HOH A 107 408 408 HOH HOH . C 3 HOH A 108 409 409 HOH HOH . C 3 HOH A 109 410 410 HOH HOH . C 3 HOH A 110 411 411 HOH HOH . C 3 HOH A 111 412 412 HOH HOH . C 3 HOH A 112 413 413 HOH HOH . C 3 HOH A 113 414 414 HOH HOH . C 3 HOH A 114 417 417 HOH HOH . C 3 HOH A 115 418 418 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 27.935 14.285 16.02 1 7.72 ? N1 FMN 139 A 1 HETATM 2 C C2 FMN . . . B 2 28.065 14.041 17.353 1 8 ? C2 FMN 139 A 1 HETATM 3 O O2 FMN . . . B 2 27.111 13.76 18.008 1 7.21 ? O2 FMN 139 A 1 HETATM 4 N N3 FMN . . . B 2 29.31 14.127 17.973 1 9.27 ? N3 FMN 139 A 1 HETATM 5 C C4 FMN . . . B 2 30.48 14.376 17.296 1 11.89 ? C4 FMN 139 A 1 HETATM 6 O O4 FMN . . . B 2 31.565 14.354 17.873 1 12.09 ? O4 FMN 139 A 1 HETATM 7 C C4A FMN . . . B 2 30.336 14.644 15.82 1 9.3 ? C4A FMN 139 A 1 HETATM 8 N N5 FMN . . . B 2 31.414 14.822 15.059 1 9.9 ? N5 FMN 139 A 1 HETATM 9 C C5A FMN . . . B 2 31.242 14.904 13.679 1 7.31 ? C5A FMN 139 A 1 HETATM 10 C C6 FMN . . . B 2 32.384 14.985 12.824 1 7.75 ? C6 FMN 139 A 1 HETATM 11 C C7 FMN . . . B 2 32.232 15.15 11.464 1 8.1 ? C7 FMN 139 A 1 HETATM 12 C C7M FMN . . . B 2 33.417 15.243 10.549 1 8.99 ? C7M FMN 139 A 1 HETATM 13 C C8 FMN . . . B 2 30.914 15.221 10.912 1 9.08 ? C8 FMN 139 A 1 HETATM 14 C C8M FMN . . . B 2 30.671 15.475 9.431 1 6.74 ? C8M FMN 139 A 1 HETATM 15 C C9 FMN . . . B 2 29.798 15.087 11.724 1 8.32 ? C9 FMN 139 A 1 HETATM 16 C C9A FMN . . . B 2 29.938 14.931 13.1 1 8.49 ? C9A FMN 139 A 1 HETATM 17 N N10 FMN . . . B 2 28.843 14.742 13.921 1 7.79 ? N10 FMN 139 A 1 HETATM 18 C C10 FMN . . . B 2 28.984 14.569 15.283 1 8.13 ? C10 FMN 139 A 1 HETATM 19 C C1' FMN . . . B 2 27.499 14.685 13.323 1 8.57 ? C1' FMN 139 A 1 HETATM 20 C C2' FMN . . . B 2 26.899 16.066 13.02 1 8.1 ? C2' FMN 139 A 1 HETATM 21 O O2' FMN . . . B 2 26.956 16.907 14.173 1 8.66 ? O2' FMN 139 A 1 HETATM 22 C C3' FMN . . . B 2 25.44 15.91 12.589 1 8.08 ? C3' FMN 139 A 1 HETATM 23 O O3' FMN . . . B 2 25.382 15.133 11.398 1 6.53 ? O3' FMN 139 A 1 HETATM 24 C C4' FMN . . . B 2 24.621 17.207 12.412 1 8.11 ? C4' FMN 139 A 1 HETATM 25 O O4' FMN . . . B 2 23.264 16.884 12.088 1 9.03 ? O4' FMN 139 A 1 HETATM 26 C C5' FMN . . . B 2 25.256 18.115 11.366 1 7.92 ? C5' FMN 139 A 1 HETATM 27 O O5' FMN . . . B 2 24.543 19.338 11.293 1 6.83 ? O5' FMN 139 A 1 HETATM 28 P P FMN . . . B 2 24.935 20.26 10.119 1 6.86 ? P FMN 139 A 1 HETATM 29 O O1P FMN . . . B 2 26.389 20.4 10.097 1 7.44 ? O1P FMN 139 A 1 HETATM 30 O O2P FMN . . . B 2 24.253 19.89 8.859 1 7.42 ? O2P FMN 139 A 1 HETATM 31 O O3P FMN . . . B 2 24.259 21.557 10.58 1 6.7 ? O3P FMN 139 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #