data_5UM3 # _model_server_result.job_id h81ibzCmakkB9gqu5Ysi6w _model_server_result.datetime_utc '2024-12-23 06:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5um3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5UM3 # _exptl.entry_id 5UM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UM3 _cell.length_a 29.177 _cell.length_b 29.375 _cell.length_c 66.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 7 A CYS 99 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A SG CYS 20 A CYS 112 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A SG CYS 23 A CYS 115 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 A SG CYS 32 A CYS 124 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc5 A SG CYS 35 A CYS 127 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc6 A SG CYS 35 A CYS 127 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc7 A ND1 HIS 41 A HIS 133 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc8 A ND1 HIS 44 A HIS 136 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc9 A SG CYS 57 A CYS 149 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 A SG CYS 59 A CYS 151 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc11 A SG CYS 71 A CYS 163 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 A ND1 HIS 74 A HIS 166 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5UM3 _atom_sites.fract_transf_matrix[1][1] 0.034274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 1 ZN ZN . C 2 ZN A 1 202 2 ZN ZN . D 2 ZN A 1 203 3 ZN ZN . E 3 HOH A 1 301 107 HOH HOH . E 3 HOH A 2 302 79 HOH HOH . E 3 HOH A 3 303 72 HOH HOH . E 3 HOH A 4 304 67 HOH HOH . E 3 HOH A 5 305 17 HOH HOH . E 3 HOH A 6 306 54 HOH HOH . E 3 HOH A 7 307 6 HOH HOH . E 3 HOH A 8 308 8 HOH HOH . E 3 HOH A 9 309 29 HOH HOH . E 3 HOH A 10 310 23 HOH HOH . E 3 HOH A 11 311 3 HOH HOH . E 3 HOH A 12 312 88 HOH HOH . E 3 HOH A 13 313 50 HOH HOH . E 3 HOH A 14 314 55 HOH HOH . E 3 HOH A 15 315 7 HOH HOH . E 3 HOH A 16 316 26 HOH HOH . E 3 HOH A 17 317 28 HOH HOH . E 3 HOH A 18 318 1 HOH HOH . E 3 HOH A 19 319 31 HOH HOH . E 3 HOH A 20 320 19 HOH HOH . E 3 HOH A 21 321 32 HOH HOH . E 3 HOH A 22 322 40 HOH HOH . E 3 HOH A 23 323 16 HOH HOH . E 3 HOH A 24 324 62 HOH HOH . E 3 HOH A 25 325 5 HOH HOH . E 3 HOH A 26 326 9 HOH HOH . E 3 HOH A 27 327 60 HOH HOH . E 3 HOH A 28 328 71 HOH HOH . E 3 HOH A 29 329 43 HOH HOH . E 3 HOH A 30 330 4 HOH HOH . E 3 HOH A 31 331 11 HOH HOH . E 3 HOH A 32 332 58 HOH HOH . E 3 HOH A 33 333 52 HOH HOH . E 3 HOH A 34 334 21 HOH HOH . E 3 HOH A 35 335 65 HOH HOH . E 3 HOH A 36 336 53 HOH HOH . E 3 HOH A 37 337 13 HOH HOH . E 3 HOH A 38 338 47 HOH HOH . E 3 HOH A 39 339 20 HOH HOH . E 3 HOH A 40 340 73 HOH HOH . E 3 HOH A 41 341 69 HOH HOH . E 3 HOH A 42 342 41 HOH HOH . E 3 HOH A 43 343 27 HOH HOH . E 3 HOH A 44 344 22 HOH HOH . E 3 HOH A 45 345 102 HOH HOH . E 3 HOH A 46 346 10 HOH HOH . E 3 HOH A 47 347 103 HOH HOH . E 3 HOH A 48 348 84 HOH HOH . E 3 HOH A 49 349 42 HOH HOH . E 3 HOH A 50 350 18 HOH HOH . E 3 HOH A 51 351 95 HOH HOH . E 3 HOH A 52 352 2 HOH HOH . E 3 HOH A 53 353 106 HOH HOH . E 3 HOH A 54 354 70 HOH HOH . E 3 HOH A 55 355 15 HOH HOH . E 3 HOH A 56 356 44 HOH HOH . E 3 HOH A 57 357 59 HOH HOH . E 3 HOH A 58 358 14 HOH HOH . E 3 HOH A 59 359 51 HOH HOH . E 3 HOH A 60 360 57 HOH HOH . E 3 HOH A 61 361 33 HOH HOH . E 3 HOH A 62 362 34 HOH HOH . E 3 HOH A 63 363 93 HOH HOH . E 3 HOH A 64 364 38 HOH HOH . E 3 HOH A 65 365 12 HOH HOH . E 3 HOH A 66 366 56 HOH HOH . E 3 HOH A 67 367 24 HOH HOH . E 3 HOH A 68 368 37 HOH HOH . E 3 HOH A 69 369 66 HOH HOH . E 3 HOH A 70 370 49 HOH HOH . E 3 HOH A 71 371 74 HOH HOH . E 3 HOH A 72 372 30 HOH HOH . E 3 HOH A 73 373 45 HOH HOH . E 3 HOH A 74 374 46 HOH HOH . E 3 HOH A 75 375 78 HOH HOH . E 3 HOH A 76 376 76 HOH HOH . E 3 HOH A 77 377 25 HOH HOH . E 3 HOH A 78 378 64 HOH HOH . E 3 HOH A 79 379 48 HOH HOH . E 3 HOH A 80 380 61 HOH HOH . E 3 HOH A 81 381 77 HOH HOH . E 3 HOH A 82 382 36 HOH HOH . E 3 HOH A 83 383 104 HOH HOH . E 3 HOH A 84 384 68 HOH HOH . E 3 HOH A 85 385 94 HOH HOH . E 3 HOH A 86 386 81 HOH HOH . E 3 HOH A 87 387 63 HOH HOH . E 3 HOH A 88 388 86 HOH HOH . E 3 HOH A 89 389 85 HOH HOH . E 3 HOH A 90 390 39 HOH HOH . E 3 HOH A 91 391 35 HOH HOH . E 3 HOH A 92 392 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.052 _atom_site.Cartn_y -11.471 _atom_site.Cartn_z 70.325 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #