data_5UM6 # _model_server_result.job_id RNgkuvuiSTyKoucwJv2M_Q _model_server_result.datetime_utc '2024-12-22 01:04:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5um6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 5UM6 # _exptl.entry_id 5UM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.047 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{[(4-chlorophenyl)methyl]disulfanyl}ethyl)decan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UM6 _cell.length_a 145.102 _cell.length_b 145.102 _cell.length_c 145.102 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 982 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 994 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id S01 _struct_conn.ptnr2_label_comp_id 8E7 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 8E7 _struct_conn.ptnr2_auth_seq_id 1103 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.013 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H32 Cl N S2' _chem_comp.formula_weight 374.047 _chem_comp.id 8EA _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{[(4-chlorophenyl)methyl]disulfanyl}ethyl)decan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C23 8EA sing 41 n n C23 C22 8EA doub 42 n y C23 C21 8EA sing 43 n y C22 C20 8EA sing 44 n y C21 C19 8EA doub 45 n y C20 C18 8EA doub 46 n y C19 C18 8EA sing 47 n y C18 C17 8EA sing 48 n n C17 S03 8EA sing 49 n n N04 C12 8EA sing 50 n n N04 C14 8EA sing 51 n n C16 C14 8EA sing 52 n n C16 S02 8EA sing 53 n n S03 S02 8EA sing 54 n n C12 C10 8EA sing 55 n n C10 C08 8EA sing 56 n n C08 C06 8EA sing 57 n n C06 C05 8EA sing 58 n n C05 C07 8EA sing 59 n n C07 C09 8EA sing 60 n n C09 C11 8EA sing 61 n n C11 C13 8EA sing 62 n n C13 C15 8EA sing 63 n n C10 H1 8EA sing 64 n n C10 H2 8EA sing 65 n n C13 H3 8EA sing 66 n n C13 H4 8EA sing 67 n n C15 H5 8EA sing 68 n n C15 H6 8EA sing 69 n n C15 H7 8EA sing 70 n n C17 H8 8EA sing 71 n n C17 H9 8EA sing 72 n n C20 H10 8EA sing 73 n n C21 H11 8EA sing 74 n n C22 H12 8EA sing 75 n n N04 H13 8EA sing 76 n n C05 H15 8EA sing 77 n n C05 H16 8EA sing 78 n n C06 H17 8EA sing 79 n n C06 H18 8EA sing 80 n n C07 H19 8EA sing 81 n n C07 H20 8EA sing 82 n n C08 H21 8EA sing 83 n n C08 H22 8EA sing 84 n n C09 H23 8EA sing 85 n n C09 H24 8EA sing 86 n n C11 H25 8EA sing 87 n n C11 H26 8EA sing 88 n n C12 H27 8EA sing 89 n n C12 H28 8EA sing 90 n n C14 H29 8EA sing 91 n n C14 H30 8EA sing 92 n n C16 H31 8EA sing 93 n n C16 H32 8EA sing 94 n n C19 H33 8EA sing 95 n n # _atom_sites.entry_id 5UM6 _atom_sites.fract_transf_matrix[1][1] 0.006892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1101 1 SO4 SO4 . C 3 8EA A 1 1102 1 8EA LIG . D 4 8E7 A 1 1103 2 8E7 CP3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8EA . . . C 3 161.322 153.245 265.357 1 64.65 ? C10 8EA 1102 A 1 HETATM 2 C C13 8EA . . . C 3 161.936 151.333 273.869 1 47.92 ? C13 8EA 1102 A 1 HETATM 3 C C15 8EA . . . C 3 161.241 150.693 275.063 1 49.37 ? C15 8EA 1102 A 1 HETATM 4 C C17 8EA . . . C 3 154.474 154.932 263.912 1 74.1 ? C17 8EA 1102 A 1 HETATM 5 C C20 8EA . . . C 3 153.173 155.748 261.908 1 53.63 ? C20 8EA 1102 A 1 HETATM 6 C C21 8EA . . . C 3 155.478 156.786 260.741 1 63.65 ? C21 8EA 1102 A 1 HETATM 7 C C22 8EA . . . C 3 153.091 156.385 260.671 1 56.66 ? C22 8EA 1102 A 1 HETATM 8 CL CL 8EA . . . C 3 154.17 157.686 258.573 1 71.94 ? CL 8EA 1102 A 1 HETATM 9 S S02 8EA . . . C 3 156.583 153.144 265.635 1 76.44 ? S02 8EA 1102 A 1 HETATM 10 S S03 8EA . . . C 3 156.175 155.017 264.696 1 79.95 ? S03 8EA 1102 A 1 HETATM 11 N N04 8EA . . . C 3 160.102 151.203 264.548 1 71.48 ? N04 8EA 1102 A 1 HETATM 12 C C05 8EA . . . C 3 161.861 152.516 269.031 1 58.52 ? C05 8EA 1102 A 1 HETATM 13 C C06 8EA . . . C 3 161.011 153.125 267.9 1 57.57 ? C06 8EA 1102 A 1 HETATM 14 C C07 8EA . . . C 3 161.003 151.916 270.158 1 55.6 ? C07 8EA 1102 A 1 HETATM 15 C C08 8EA . . . C 3 161.882 153.644 266.735 1 60.39 ? C08 8EA 1102 A 1 HETATM 16 C C09 8EA . . . C 3 161.864 151.475 271.352 1 51.74 ? C09 8EA 1102 A 1 HETATM 17 C C11 8EA . . . C 3 161.035 151.343 272.634 1 46.51 ? C11 8EA 1102 A 1 HETATM 18 C C12 8EA . . . C 3 161.387 151.712 265.129 1 67 ? C12 8EA 1102 A 1 HETATM 19 C C14 8EA . . . C 3 158.882 151.475 265.375 1 74.57 ? C14 8EA 1102 A 1 HETATM 20 C C16 8EA . . . C 3 157.754 152.147 264.549 1 74.49 ? C16 8EA 1102 A 1 HETATM 21 C C18 8EA . . . C 3 154.396 155.619 262.581 1 62.18 ? C18 8EA 1102 A 1 HETATM 22 C C19 8EA . . . C 3 155.542 156.147 261.978 1 61.55 ? C19 8EA 1102 A 1 HETATM 23 C C23 8EA . . . C 3 154.253 156.894 260.11 1 64.45 ? C23 8EA 1102 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 23 #