data_5UM6 # _model_server_result.job_id m1l6RGtvyWYrsxOABR3EhQ _model_server_result.datetime_utc '2024-12-22 01:39:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5um6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1103}' # _entry.id 5UM6 # _exptl.entry_id 5UM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 217.414 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(decylamino)ethane-1-thiol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UM6 _cell.length_a 145.102 _cell.length_b 145.102 _cell.length_c 145.102 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 982 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 994 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id S01 _struct_conn.ptnr2_label_comp_id 8E7 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 8E7 _struct_conn.ptnr2_auth_seq_id 1103 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.013 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H27 N S' _chem_comp.formula_weight 217.414 _chem_comp.id 8E7 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(decylamino)ethane-1-thiol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 S01 8E7 sing 1 n n C02 C03 8E7 sing 2 n n C03 N04 8E7 sing 3 n n N04 C05 8E7 sing 4 n n C05 C06 8E7 sing 5 n n C13 C14 8E7 sing 6 n n C13 C12 8E7 sing 7 n n C06 C07 8E7 sing 8 n n C12 C11 8E7 sing 9 n n C11 C10 8E7 sing 10 n n C08 C07 8E7 sing 11 n n C08 C09 8E7 sing 12 n n C09 C10 8E7 sing 13 n n C14 H1 8E7 sing 14 n n C14 H2 8E7 sing 15 n n C14 H3 8E7 sing 16 n n C13 H4 8E7 sing 17 n n C13 H5 8E7 sing 18 n n C12 H6 8E7 sing 19 n n C12 H7 8E7 sing 20 n n C11 H8 8E7 sing 21 n n C11 H9 8E7 sing 22 n n C10 H10 8E7 sing 23 n n C10 H11 8E7 sing 24 n n S01 H12 8E7 sing 25 n n C02 H13 8E7 sing 26 n n C02 H14 8E7 sing 27 n n C03 H15 8E7 sing 28 n n C03 H16 8E7 sing 29 n n N04 H17 8E7 sing 30 n n C05 H19 8E7 sing 31 n n C05 H20 8E7 sing 32 n n C06 H21 8E7 sing 33 n n C06 H22 8E7 sing 34 n n C07 H23 8E7 sing 35 n n C07 H24 8E7 sing 36 n n C08 H25 8E7 sing 37 n n C08 H26 8E7 sing 38 n n C09 H27 8E7 sing 39 n n C09 H28 8E7 sing 40 n n # _atom_sites.entry_id 5UM6 _atom_sites.fract_transf_matrix[1][1] 0.006892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1101 1 SO4 SO4 . C 3 8EA A 1 1102 1 8EA LIG . D 4 8E7 A 1 1103 2 8E7 CP3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 8E7 . . . D 4 124.643 208.861 259.061 1 55.15 ? C14 8E7 1103 A 1 HETATM 2 C C13 8E7 . . . D 4 123.349 209.106 258.293 1 55.06 ? C13 8E7 1103 A 1 HETATM 3 C C12 8E7 . . . D 4 122.336 209.847 259.158 1 55.2 ? C12 8E7 1103 A 1 HETATM 4 C C11 8E7 . . . D 4 120.986 209.141 259.2 1 51.95 ? C11 8E7 1103 A 1 HETATM 5 C C10 8E7 . . . D 4 120.37 209.181 260.595 1 52.98 ? C10 8E7 1103 A 1 HETATM 6 S S01 8E7 . . . D 4 113.791 206.763 254.666 1 76.33 ? S01 8E7 1103 A 1 HETATM 7 C C02 8E7 . . . D 4 115.513 207.343 254.629 1 71.84 ? C02 8E7 1103 A 1 HETATM 8 C C03 8E7 . . . D 4 116.07 207.332 256.048 1 70.15 ? C03 8E7 1103 A 1 HETATM 9 N N04 8E7 . . . D 4 116.428 208.672 256.468 1 69.98 ? N04 8E7 1103 A 1 HETATM 10 C C05 8E7 . . . D 4 115.526 209.081 257.53 1 66.71 ? C05 8E7 1103 A 1 HETATM 11 C C06 8E7 . . . D 4 115.929 208.408 258.838 1 60.03 ? C06 8E7 1103 A 1 HETATM 12 C C07 8E7 . . . D 4 116.667 209.363 259.768 1 55.68 ? C07 8E7 1103 A 1 HETATM 13 C C08 8E7 . . . D 4 118.154 209.356 259.442 1 55.1 ? C08 8E7 1103 A 1 HETATM 14 C C09 8E7 . . . D 4 119.015 209.879 260.585 1 55.08 ? C09 8E7 1103 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #