data_5UME # _model_server_result.job_id w1OoTlGcy0C1O6b-kcB1zg _model_server_result.datetime_utc '2025-06-28 04:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ume # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":300}' # _entry.id 5UME # _exptl.entry_id 5UME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UME _cell.length_a 90.065 _cell.length_b 134.96 _cell.length_c 182.985 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UME _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,I,J,S,T,U,V,W,DA,GA 1 1 B,F,K,L,M,N,Z,AA,BA,CA,EA,IA 2 1 C,E,O,P,Q,R,X,Y,FA,HA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 K N N ? 2 O N N ? 2 S N N ? 2 X N N ? 2 Z N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 99 n n PA O2A FAD sing 100 n n PA O5B FAD sing 101 n n PA O3P FAD sing 102 n n O2A HOA2 FAD sing 103 n n O5B C5B FAD sing 104 n n C5B C4B FAD sing 105 n n C5B H51A FAD sing 106 n n C5B H52A FAD sing 107 n n C4B O4B FAD sing 108 n n C4B C3B FAD sing 109 n n C4B H4B FAD sing 110 n n O4B C1B FAD sing 111 n n C3B O3B FAD sing 112 n n C3B C2B FAD sing 113 n n C3B H3B FAD sing 114 n n O3B HO3A FAD sing 115 n n C2B O2B FAD sing 116 n n C2B C1B FAD sing 117 n n C2B H2B FAD sing 118 n n O2B HO2A FAD sing 119 n n C1B N9A FAD sing 120 n n C1B H1B FAD sing 121 n n N9A C8A FAD sing 122 n y N9A C4A FAD sing 123 n y C8A N7A FAD doub 124 n y C8A H8A FAD sing 125 n n N7A C5A FAD sing 126 n y C5A C6A FAD sing 127 n y C5A C4A FAD doub 128 n y C6A N6A FAD sing 129 n n C6A N1A FAD doub 130 n y N6A H61A FAD sing 131 n n N6A H62A FAD sing 132 n n N1A C2A FAD sing 133 n y C2A N3A FAD doub 134 n y C2A H2A FAD sing 135 n n N3A C4A FAD sing 136 n y N1 C2 FAD sing 137 n n N1 C10 FAD doub 138 n n C2 O2 FAD doub 139 n n C2 N3 FAD sing 140 n n N3 C4 FAD sing 141 n n N3 HN3 FAD sing 142 n n C4 O4 FAD doub 143 n n C4 C4X FAD sing 144 n n C4X N5 FAD doub 145 n n C4X C10 FAD sing 146 n n N5 C5X FAD sing 147 n n C5X C6 FAD doub 148 n y C5X C9A FAD sing 149 n y C6 C7 FAD sing 150 n y C6 H6 FAD sing 151 n n C7 C7M FAD sing 152 n n C7 C8 FAD doub 153 n y C7M HM71 FAD sing 154 n n C7M HM72 FAD sing 155 n n C7M HM73 FAD sing 156 n n C8 C8M FAD sing 157 n n C8 C9 FAD sing 158 n y C8M HM81 FAD sing 159 n n C8M HM82 FAD sing 160 n n C8M HM83 FAD sing 161 n n C9 C9A FAD doub 162 n y C9 H9 FAD sing 163 n n C9A N10 FAD sing 164 n n N10 C10 FAD sing 165 n n N10 C1' FAD sing 166 n n C1' C2' FAD sing 167 n n C1' "H1'1" FAD sing 168 n n C1' "H1'2" FAD sing 169 n n C2' O2' FAD sing 170 n n C2' C3' FAD sing 171 n n C2' H2' FAD sing 172 n n O2' HO2' FAD sing 173 n n C3' O3' FAD sing 174 n n C3' C4' FAD sing 175 n n C3' H3' FAD sing 176 n n O3' HO3' FAD sing 177 n n C4' O4' FAD sing 178 n n C4' C5' FAD sing 179 n n C4' H4' FAD sing 180 n n O4' HO4' FAD sing 181 n n C5' O5' FAD sing 182 n n C5' "H5'1" FAD sing 183 n n C5' "H5'2" FAD sing 184 n n O5' P FAD sing 185 n n P O1P FAD doub 186 n n P O2P FAD sing 187 n n P O3P FAD sing 188 n n O2P HOP2 FAD sing 189 n n # _atom_sites.entry_id 5UME _atom_sites.fract_transf_matrix[1][1] 0.011103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD A 1 300 300 FAD FAD . H 3 SO4 A 1 301 301 SO4 SO4 . I 4 ACY A 1 302 302 ACY ACY . J 5 EDO A 1 303 303 EDO EDO . K 2 FAD B 1 300 300 FAD FAD . L 3 SO4 B 1 301 301 SO4 SO4 . M 4 ACY B 1 302 302 ACY ACY . N 6 FMT B 1 303 303 FMT FMT . O 2 FAD C 1 300 300 FAD FAD . P 6 FMT C 1 301 301 FMT FMT . Q 6 FMT C 1 302 302 FMT FMT . R 4 ACY C 1 303 303 ACY ACY . S 2 FAD D 1 300 300 FAD FAD . T 4 ACY D 1 301 301 ACY ACY . U 4 ACY D 1 302 302 ACY ACY . V 4 ACY D 1 303 303 ACY ACY . W 6 FMT D 1 304 304 FMT FMT . X 2 FAD E 1 300 300 FAD FAD . Y 4 ACY E 1 301 301 ACY ACY . Z 2 FAD F 1 300 300 FAD FAD . AA 4 ACY F 1 301 301 ACY ACY . BA 4 ACY F 1 302 302 ACY ACY . CA 5 EDO F 1 303 303 EDO EDO . DA 7 HOH A 1 401 45 HOH HOH . DA 7 HOH A 2 402 24 HOH HOH . DA 7 HOH A 3 403 6 HOH HOH . DA 7 HOH A 4 404 26 HOH HOH . DA 7 HOH A 5 405 4 HOH HOH . DA 7 HOH A 6 406 7 HOH HOH . DA 7 HOH A 7 407 47 HOH HOH . DA 7 HOH A 8 408 20 HOH HOH . DA 7 HOH A 9 409 5 HOH HOH . DA 7 HOH A 10 410 25 HOH HOH . EA 7 HOH B 1 401 15 HOH HOH . EA 7 HOH B 2 402 43 HOH HOH . EA 7 HOH B 3 403 19 HOH HOH . EA 7 HOH B 4 404 10 HOH HOH . FA 7 HOH C 1 401 22 HOH HOH . FA 7 HOH C 2 402 28 HOH HOH . FA 7 HOH C 3 403 3 HOH HOH . FA 7 HOH C 4 404 41 HOH HOH . FA 7 HOH C 5 405 17 HOH HOH . FA 7 HOH C 6 406 27 HOH HOH . FA 7 HOH C 7 407 21 HOH HOH . FA 7 HOH C 8 408 13 HOH HOH . GA 7 HOH D 1 401 31 HOH HOH . GA 7 HOH D 2 402 8 HOH HOH . GA 7 HOH D 3 403 29 HOH HOH . GA 7 HOH D 4 404 30 HOH HOH . GA 7 HOH D 5 405 2 HOH HOH . GA 7 HOH D 6 406 33 HOH HOH . GA 7 HOH D 7 407 12 HOH HOH . GA 7 HOH D 8 408 32 HOH HOH . HA 7 HOH E 1 401 34 HOH HOH . HA 7 HOH E 2 402 40 HOH HOH . HA 7 HOH E 3 403 35 HOH HOH . HA 7 HOH E 4 404 38 HOH HOH . HA 7 HOH E 5 405 14 HOH HOH . HA 7 HOH E 6 406 37 HOH HOH . HA 7 HOH E 7 407 16 HOH HOH . HA 7 HOH E 8 408 36 HOH HOH . HA 7 HOH E 9 409 11 HOH HOH . IA 7 HOH F 1 401 9 HOH HOH . IA 7 HOH F 2 402 44 HOH HOH . IA 7 HOH F 3 403 46 HOH HOH . IA 7 HOH F 4 404 48 HOH HOH . IA 7 HOH F 5 405 1 HOH HOH . IA 7 HOH F 6 406 42 HOH HOH . IA 7 HOH F 7 407 39 HOH HOH . IA 7 HOH F 8 408 23 HOH HOH . IA 7 HOH F 9 409 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 2 48.325 23.782 106.783 1 75.67 ? PA FAD 300 A 1 HETATM 2 O O1A FAD . . . G 2 49.566 24.142 107.497 1 81.68 ? O1A FAD 300 A 1 HETATM 3 O O2A FAD . . . G 2 48.327 22.3 106.418 1 80.61 ? O2A FAD 300 A 1 HETATM 4 O O5B FAD . . . G 2 48.14 24.678 105.528 1 75.35 ? O5B FAD 300 A 1 HETATM 5 C C5B FAD . . . G 2 48.086 26.116 105.635 1 80.2 ? C5B FAD 300 A 1 HETATM 6 C C4B FAD . . . G 2 48.616 26.757 104.374 1 89.02 ? C4B FAD 300 A 1 HETATM 7 O O4B FAD . . . G 2 50.048 26.918 104.487 1 94.09 ? O4B FAD 300 A 1 HETATM 8 C C3B FAD . . . G 2 48.392 25.99 103.071 1 92.27 ? C3B FAD 300 A 1 HETATM 9 O O3B FAD . . . G 2 48.225 26.895 101.984 1 89.02 ? O3B FAD 300 A 1 HETATM 10 C C2B FAD . . . G 2 49.691 25.194 102.936 1 89.5 ? C2B FAD 300 A 1 HETATM 11 O O2B FAD . . . G 2 49.985 24.81 101.602 1 82.36 ? O2B FAD 300 A 1 HETATM 12 C C1B FAD . . . G 2 50.696 26.227 103.435 1 95.56 ? C1B FAD 300 A 1 HETATM 13 N N9A FAD . . . G 2 51.927 25.66 103.964 1 102.4 ? N9A FAD 300 A 1 HETATM 14 C C8A FAD . . . G 2 52.067 24.48 104.643 1 105.13 ? C8A FAD 300 A 1 HETATM 15 N N7A FAD . . . G 2 53.296 24.219 105.016 1 105.5 ? N7A FAD 300 A 1 HETATM 16 C C5A FAD . . . G 2 54.014 25.311 104.557 1 106.38 ? C5A FAD 300 A 1 HETATM 17 C C6A FAD . . . G 2 55.378 25.646 104.632 1 106.22 ? C6A FAD 300 A 1 HETATM 18 N N6A FAD . . . G 2 56.298 24.88 105.226 1 103.56 ? N6A FAD 300 A 1 HETATM 19 N N1A FAD . . . G 2 55.768 26.81 104.065 1 108.39 ? N1A FAD 300 A 1 HETATM 20 C C2A FAD . . . G 2 54.852 27.578 103.47 1 109.93 ? C2A FAD 300 A 1 HETATM 21 N N3A FAD . . . G 2 53.539 27.369 103.34 1 109.43 ? N3A FAD 300 A 1 HETATM 22 C C4A FAD . . . G 2 53.183 26.209 103.906 1 106.51 ? C4A FAD 300 A 1 HETATM 23 N N1 FAD . . . G 2 40.207 25.927 111.857 1 74.52 ? N1 FAD 300 A 1 HETATM 24 C C2 FAD . . . G 2 40.09 26.239 113.18 1 69.62 ? C2 FAD 300 A 1 HETATM 25 O O2 FAD . . . G 2 40.438 27.343 113.627 1 74.35 ? O2 FAD 300 A 1 HETATM 26 N N3 FAD . . . G 2 39.569 25.301 114.048 1 61.28 ? N3 FAD 300 A 1 HETATM 27 C C4 FAD . . . G 2 39.135 24.031 113.717 1 68.2 ? C4 FAD 300 A 1 HETATM 28 O O4 FAD . . . G 2 38.683 23.281 114.58 1 75.72 ? O4 FAD 300 A 1 HETATM 29 C C4X FAD . . . G 2 39.264 23.717 112.312 1 68.22 ? C4X FAD 300 A 1 HETATM 30 N N5 FAD . . . G 2 38.884 22.542 111.911 1 65.81 ? N5 FAD 300 A 1 HETATM 31 C C5X FAD . . . G 2 39.021 22.24 110.568 1 67.05 ? C5X FAD 300 A 1 HETATM 32 C C6 FAD . . . G 2 38.631 20.975 110.114 1 65.15 ? C6 FAD 300 A 1 HETATM 33 C C7 FAD . . . G 2 38.756 20.626 108.772 1 63.11 ? C7 FAD 300 A 1 HETATM 34 C C7M FAD . . . G 2 38.317 19.26 108.321 1 61.65 ? C7M FAD 300 A 1 HETATM 35 C C8 FAD . . . G 2 39.262 21.564 107.856 1 60.95 ? C8 FAD 300 A 1 HETATM 36 C C8M FAD . . . G 2 39.381 21.231 106.395 1 60.76 ? C8M FAD 300 A 1 HETATM 37 C C9 FAD . . . G 2 39.65 22.823 108.305 1 64.51 ? C9 FAD 300 A 1 HETATM 38 C C9A FAD . . . G 2 39.534 23.166 109.649 1 67.53 ? C9A FAD 300 A 1 HETATM 39 N N10 FAD . . . G 2 39.935 24.425 110.138 1 68.9 ? N10 FAD 300 A 1 HETATM 40 C C10 FAD . . . G 2 39.815 24.732 111.459 1 69.15 ? C10 FAD 300 A 1 HETATM 41 C C1' FAD . . . G 2 40.463 25.453 109.233 1 74.85 ? C1' FAD 300 A 1 HETATM 42 C C2' FAD . . . G 2 41.958 25.333 108.978 1 78.54 ? C2' FAD 300 A 1 HETATM 43 O O2' FAD . . . G 2 42.709 25.521 110.179 1 79.11 ? O2' FAD 300 A 1 HETATM 44 C C3' FAD . . . G 2 42.359 26.386 107.948 1 78.86 ? C3' FAD 300 A 1 HETATM 45 O O3' FAD . . . G 2 42.083 25.897 106.641 1 86.38 ? O3' FAD 300 A 1 HETATM 46 C C4' FAD . . . G 2 43.795 26.9 108.033 1 77.34 ? C4' FAD 300 A 1 HETATM 47 O O4' FAD . . . G 2 43.83 28.066 107.206 1 80.37 ? O4' FAD 300 A 1 HETATM 48 C C5' FAD . . . G 2 44.866 25.925 107.581 1 70.03 ? C5' FAD 300 A 1 HETATM 49 O O5' FAD . . . G 2 44.81 24.718 108.374 1 65.59 ? O5' FAD 300 A 1 HETATM 50 P P FAD . . . G 2 45.623 23.43 107.943 1 73.71 ? P FAD 300 A 1 HETATM 51 O O1P FAD . . . G 2 45.712 22.362 109.04 1 63.06 ? O1P FAD 300 A 1 HETATM 52 O O2P FAD . . . G 2 45.129 22.806 106.683 1 78.72 ? O2P FAD 300 A 1 HETATM 53 O O3P FAD . . . G 2 47.069 24.108 107.697 1 77.86 ? O3P FAD 300 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 479 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #