data_5UMK # _model_server_result.job_id ba9bU3DZ0U-K7fc7ehNzUw _model_server_result.datetime_utc '2025-01-10 12:14:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5umk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":203}' # _entry.id 5UMK # _exptl.entry_id 5UMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UMK _cell.length_a 68.106 _cell.length_b 68.305 _cell.length_c 86.63 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5UMK _atom_sites.fract_transf_matrix[1][1] 0.014683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 201 1 SO4 SO4 . E 3 IPA A 1 202 4 IPA IPA . F 3 IPA A 1 203 5 IPA IPA . G 4 GOL A 1 204 2 GOL GOL . H 2 SO4 B 1 201 2 SO4 SO4 . I 3 IPA B 1 202 1 IPA IPA . J 4 GOL B 1 203 4 GOL GOL . K 3 IPA C 1 201 2 IPA IPA . L 5 HOH A 1 301 21 HOH HOH . L 5 HOH A 2 302 56 HOH HOH . L 5 HOH A 3 303 98 HOH HOH . L 5 HOH A 4 304 187 HOH HOH . L 5 HOH A 5 305 175 HOH HOH . L 5 HOH A 6 306 141 HOH HOH . L 5 HOH A 7 307 4 HOH HOH . L 5 HOH A 8 308 2 HOH HOH . L 5 HOH A 9 309 5 HOH HOH . L 5 HOH A 10 310 268 HOH HOH . L 5 HOH A 11 311 63 HOH HOH . L 5 HOH A 12 312 68 HOH HOH . L 5 HOH A 13 313 210 HOH HOH . L 5 HOH A 14 314 202 HOH HOH . L 5 HOH A 15 315 66 HOH HOH . L 5 HOH A 16 316 364 HOH HOH . L 5 HOH A 17 317 20 HOH HOH . L 5 HOH A 18 318 17 HOH HOH . L 5 HOH A 19 319 65 HOH HOH . L 5 HOH A 20 320 223 HOH HOH . L 5 HOH A 21 321 102 HOH HOH . L 5 HOH A 22 322 303 HOH HOH . L 5 HOH A 23 323 36 HOH HOH . L 5 HOH A 24 324 80 HOH HOH . L 5 HOH A 25 325 220 HOH HOH . L 5 HOH A 26 326 142 HOH HOH . L 5 HOH A 27 327 224 HOH HOH . L 5 HOH A 28 328 205 HOH HOH . L 5 HOH A 29 329 135 HOH HOH . L 5 HOH A 30 330 280 HOH HOH . L 5 HOH A 31 331 106 HOH HOH . L 5 HOH A 32 332 62 HOH HOH . L 5 HOH A 33 333 180 HOH HOH . L 5 HOH A 34 334 177 HOH HOH . L 5 HOH A 35 335 76 HOH HOH . L 5 HOH A 36 336 338 HOH HOH . L 5 HOH A 37 337 107 HOH HOH . L 5 HOH A 38 338 67 HOH HOH . L 5 HOH A 39 339 160 HOH HOH . L 5 HOH A 40 340 2 HOH HOH . L 5 HOH A 41 341 108 HOH HOH . L 5 HOH A 42 342 37 HOH HOH . L 5 HOH A 43 343 291 HOH HOH . L 5 HOH A 44 344 354 HOH HOH . L 5 HOH A 45 345 253 HOH HOH . L 5 HOH A 46 346 39 HOH HOH . L 5 HOH A 47 347 299 HOH HOH . L 5 HOH A 48 348 61 HOH HOH . L 5 HOH A 49 349 6 HOH HOH . L 5 HOH A 50 350 64 HOH HOH . L 5 HOH A 51 351 9 HOH HOH . L 5 HOH A 52 352 203 HOH HOH . L 5 HOH A 53 353 75 HOH HOH . L 5 HOH A 54 354 100 HOH HOH . L 5 HOH A 55 355 230 HOH HOH . L 5 HOH A 56 356 185 HOH HOH . L 5 HOH A 57 357 40 HOH HOH . L 5 HOH A 58 358 96 HOH HOH . L 5 HOH A 59 359 103 HOH HOH . L 5 HOH A 60 360 74 HOH HOH . L 5 HOH A 61 361 105 HOH HOH . L 5 HOH A 62 362 130 HOH HOH . L 5 HOH A 63 363 42 HOH HOH . L 5 HOH A 64 364 260 HOH HOH . L 5 HOH A 65 365 359 HOH HOH . L 5 HOH A 66 366 148 HOH HOH . L 5 HOH A 67 367 8 HOH HOH . L 5 HOH A 68 368 54 HOH HOH . L 5 HOH A 69 369 349 HOH HOH . L 5 HOH A 70 370 29 HOH HOH . L 5 HOH A 71 371 26 HOH HOH . L 5 HOH A 72 372 45 HOH HOH . L 5 HOH A 73 373 8 HOH HOH . L 5 HOH A 74 374 11 HOH HOH . L 5 HOH A 75 375 93 HOH HOH . L 5 HOH A 76 376 151 HOH HOH . L 5 HOH A 77 377 261 HOH HOH . L 5 HOH A 78 378 452 HOH HOH . L 5 HOH A 79 379 301 HOH HOH . L 5 HOH A 80 380 154 HOH HOH . L 5 HOH A 81 381 197 HOH HOH . L 5 HOH A 82 382 321 HOH HOH . L 5 HOH A 83 383 116 HOH HOH . L 5 HOH A 84 384 351 HOH HOH . L 5 HOH A 85 385 449 HOH HOH . L 5 HOH A 86 386 206 HOH HOH . L 5 HOH A 87 387 84 HOH HOH . L 5 HOH A 88 388 136 HOH HOH . L 5 HOH A 89 389 380 HOH HOH . L 5 HOH A 90 390 245 HOH HOH . L 5 HOH A 91 391 461 HOH HOH . L 5 HOH A 92 392 121 HOH HOH . L 5 HOH A 93 393 170 HOH HOH . L 5 HOH A 94 394 150 HOH HOH . L 5 HOH A 95 395 318 HOH HOH . L 5 HOH A 96 396 119 HOH HOH . L 5 HOH A 97 397 168 HOH HOH . L 5 HOH A 98 398 16 HOH HOH . L 5 HOH A 99 399 346 HOH HOH . L 5 HOH A 100 400 370 HOH HOH . L 5 HOH A 101 401 258 HOH HOH . L 5 HOH A 102 402 153 HOH HOH . L 5 HOH A 103 403 249 HOH HOH . L 5 HOH A 104 404 199 HOH HOH . L 5 HOH A 105 405 6 HOH HOH . L 5 HOH A 106 406 233 HOH HOH . L 5 HOH A 107 407 120 HOH HOH . L 5 HOH A 108 408 82 HOH HOH . M 5 HOH B 1 301 49 HOH HOH . M 5 HOH B 2 302 144 HOH HOH . M 5 HOH B 3 303 248 HOH HOH . M 5 HOH B 4 304 90 HOH HOH . M 5 HOH B 5 305 51 HOH HOH . M 5 HOH B 6 306 20 HOH HOH . M 5 HOH B 7 307 11 HOH HOH . M 5 HOH B 8 308 57 HOH HOH . M 5 HOH B 9 309 115 HOH HOH . M 5 HOH B 10 310 30 HOH HOH . M 5 HOH B 11 311 111 HOH HOH . M 5 HOH B 12 312 225 HOH HOH . M 5 HOH B 13 313 122 HOH HOH . M 5 HOH B 14 314 335 HOH HOH . M 5 HOH B 15 315 91 HOH HOH . M 5 HOH B 16 316 306 HOH HOH . M 5 HOH B 17 317 283 HOH HOH . M 5 HOH B 18 318 343 HOH HOH . M 5 HOH B 19 319 35 HOH HOH . M 5 HOH B 20 320 53 HOH HOH . M 5 HOH B 21 321 41 HOH HOH . M 5 HOH B 22 322 48 HOH HOH . M 5 HOH B 23 323 143 HOH HOH . M 5 HOH B 24 324 1 HOH HOH . M 5 HOH B 25 325 58 HOH HOH . M 5 HOH B 26 326 134 HOH HOH . M 5 HOH B 27 327 157 HOH HOH . M 5 HOH B 28 328 38 HOH HOH . M 5 HOH B 29 329 289 HOH HOH . M 5 HOH B 30 330 47 HOH HOH . M 5 HOH B 31 331 104 HOH HOH . M 5 HOH B 32 332 22 HOH HOH . M 5 HOH B 33 333 176 HOH HOH . M 5 HOH B 34 334 192 HOH HOH . M 5 HOH B 35 335 244 HOH HOH . M 5 HOH B 36 336 10 HOH HOH . M 5 HOH B 37 337 227 HOH HOH . M 5 HOH B 38 338 240 HOH HOH . M 5 HOH B 39 339 295 HOH HOH . M 5 HOH B 40 340 235 HOH HOH . M 5 HOH B 41 341 234 HOH HOH . M 5 HOH B 42 342 3 HOH HOH . M 5 HOH B 43 343 50 HOH HOH . M 5 HOH B 44 344 95 HOH HOH . M 5 HOH B 45 345 99 HOH HOH . M 5 HOH B 46 346 101 HOH HOH . M 5 HOH B 47 347 188 HOH HOH . M 5 HOH B 48 348 331 HOH HOH . M 5 HOH B 49 349 4 HOH HOH . M 5 HOH B 50 350 13 HOH HOH . M 5 HOH B 51 351 33 HOH HOH . M 5 HOH B 52 352 132 HOH HOH . M 5 HOH B 53 353 137 HOH HOH . M 5 HOH B 54 354 386 HOH HOH . M 5 HOH B 55 355 46 HOH HOH . M 5 HOH B 56 356 81 HOH HOH . M 5 HOH B 57 357 174 HOH HOH . M 5 HOH B 58 358 183 HOH HOH . M 5 HOH B 59 359 71 HOH HOH . M 5 HOH B 60 360 178 HOH HOH . M 5 HOH B 61 361 60 HOH HOH . M 5 HOH B 62 362 16 HOH HOH . M 5 HOH B 63 363 10 HOH HOH . M 5 HOH B 64 364 73 HOH HOH . M 5 HOH B 65 365 161 HOH HOH . M 5 HOH B 66 366 9 HOH HOH . M 5 HOH B 67 367 88 HOH HOH . M 5 HOH B 68 368 146 HOH HOH . M 5 HOH B 69 369 181 HOH HOH . M 5 HOH B 70 370 269 HOH HOH . M 5 HOH B 71 371 3 HOH HOH . M 5 HOH B 72 372 12 HOH HOH . M 5 HOH B 73 373 149 HOH HOH . M 5 HOH B 74 374 326 HOH HOH . M 5 HOH B 75 375 13 HOH HOH . M 5 HOH B 76 376 313 HOH HOH . M 5 HOH B 77 377 117 HOH HOH . M 5 HOH B 78 378 324 HOH HOH . M 5 HOH B 79 379 207 HOH HOH . M 5 HOH B 80 380 18 HOH HOH . M 5 HOH B 81 381 369 HOH HOH . M 5 HOH B 82 382 173 HOH HOH . M 5 HOH B 83 383 266 HOH HOH . M 5 HOH B 84 384 259 HOH HOH . M 5 HOH B 85 385 22 HOH HOH . M 5 HOH B 86 386 388 HOH HOH . M 5 HOH B 87 387 164 HOH HOH . M 5 HOH B 88 388 165 HOH HOH . M 5 HOH B 89 389 453 HOH HOH . M 5 HOH B 90 390 191 HOH HOH . M 5 HOH B 91 391 127 HOH HOH . M 5 HOH B 92 392 138 HOH HOH . M 5 HOH B 93 393 399 HOH HOH . M 5 HOH B 94 394 459 HOH HOH . M 5 HOH B 95 395 270 HOH HOH . M 5 HOH B 96 396 263 HOH HOH . M 5 HOH B 97 397 468 HOH HOH . M 5 HOH B 98 398 451 HOH HOH . N 5 HOH C 1 301 15 HOH HOH . N 5 HOH C 2 302 211 HOH HOH . N 5 HOH C 3 303 140 HOH HOH . N 5 HOH C 4 304 155 HOH HOH . N 5 HOH C 5 305 125 HOH HOH . N 5 HOH C 6 306 25 HOH HOH . N 5 HOH C 7 307 209 HOH HOH . N 5 HOH C 8 308 387 HOH HOH . N 5 HOH C 9 309 147 HOH HOH . N 5 HOH C 10 310 72 HOH HOH . N 5 HOH C 11 311 89 HOH HOH . N 5 HOH C 12 312 79 HOH HOH . N 5 HOH C 13 313 14 HOH HOH . N 5 HOH C 14 314 158 HOH HOH . N 5 HOH C 15 315 169 HOH HOH . N 5 HOH C 16 316 156 HOH HOH . N 5 HOH C 17 317 182 HOH HOH . N 5 HOH C 18 318 59 HOH HOH . N 5 HOH C 19 319 133 HOH HOH . N 5 HOH C 20 320 94 HOH HOH . N 5 HOH C 21 321 14 HOH HOH . N 5 HOH C 22 322 24 HOH HOH . N 5 HOH C 23 323 208 HOH HOH . N 5 HOH C 24 324 179 HOH HOH . N 5 HOH C 25 325 193 HOH HOH . N 5 HOH C 26 326 231 HOH HOH . N 5 HOH C 27 327 250 HOH HOH . N 5 HOH C 28 328 12 HOH HOH . N 5 HOH C 29 329 124 HOH HOH . N 5 HOH C 30 330 18 HOH HOH . N 5 HOH C 31 331 113 HOH HOH . N 5 HOH C 32 332 43 HOH HOH . N 5 HOH C 33 333 97 HOH HOH . N 5 HOH C 34 334 128 HOH HOH . N 5 HOH C 35 335 28 HOH HOH . N 5 HOH C 36 336 276 HOH HOH . N 5 HOH C 37 337 15 HOH HOH . N 5 HOH C 38 338 159 HOH HOH . N 5 HOH C 39 339 87 HOH HOH . N 5 HOH C 40 340 85 HOH HOH . N 5 HOH C 41 341 166 HOH HOH . N 5 HOH C 42 342 212 HOH HOH . N 5 HOH C 43 343 70 HOH HOH . N 5 HOH C 44 344 118 HOH HOH . N 5 HOH C 45 345 201 HOH HOH . N 5 HOH C 46 346 229 HOH HOH . N 5 HOH C 47 347 1 HOH HOH . N 5 HOH C 48 348 196 HOH HOH . N 5 HOH C 49 349 69 HOH HOH . N 5 HOH C 50 350 5 HOH HOH . N 5 HOH C 51 351 126 HOH HOH . N 5 HOH C 52 352 112 HOH HOH . N 5 HOH C 53 353 317 HOH HOH . N 5 HOH C 54 354 236 HOH HOH . N 5 HOH C 55 355 394 HOH HOH . N 5 HOH C 56 356 78 HOH HOH . N 5 HOH C 57 357 152 HOH HOH . N 5 HOH C 58 358 162 HOH HOH . N 5 HOH C 59 359 19 HOH HOH . N 5 HOH C 60 360 31 HOH HOH . N 5 HOH C 61 361 163 HOH HOH . N 5 HOH C 62 362 34 HOH HOH . N 5 HOH C 63 363 86 HOH HOH . N 5 HOH C 64 364 23 HOH HOH . N 5 HOH C 65 365 277 HOH HOH . N 5 HOH C 66 366 92 HOH HOH . N 5 HOH C 67 367 139 HOH HOH . N 5 HOH C 68 368 186 HOH HOH . N 5 HOH C 69 369 21 HOH HOH . N 5 HOH C 70 370 184 HOH HOH . N 5 HOH C 71 371 114 HOH HOH . N 5 HOH C 72 372 123 HOH HOH . N 5 HOH C 73 373 77 HOH HOH . N 5 HOH C 74 374 344 HOH HOH . N 5 HOH C 75 375 27 HOH HOH . N 5 HOH C 76 376 110 HOH HOH . N 5 HOH C 77 377 319 HOH HOH . N 5 HOH C 78 378 216 HOH HOH . N 5 HOH C 79 379 217 HOH HOH . N 5 HOH C 80 380 285 HOH HOH . N 5 HOH C 81 381 390 HOH HOH . N 5 HOH C 82 382 19 HOH HOH . N 5 HOH C 83 383 55 HOH HOH . N 5 HOH C 84 384 52 HOH HOH . N 5 HOH C 85 385 265 HOH HOH . N 5 HOH C 86 386 226 HOH HOH . N 5 HOH C 87 387 214 HOH HOH . N 5 HOH C 88 388 241 HOH HOH . N 5 HOH C 89 389 450 HOH HOH . N 5 HOH C 90 390 83 HOH HOH . N 5 HOH C 91 391 456 HOH HOH . N 5 HOH C 92 392 145 HOH HOH . N 5 HOH C 93 393 204 HOH HOH . N 5 HOH C 94 394 239 HOH HOH . N 5 HOH C 95 395 332 HOH HOH . N 5 HOH C 96 396 290 HOH HOH . N 5 HOH C 97 397 190 HOH HOH . N 5 HOH C 98 398 336 HOH HOH . N 5 HOH C 99 399 17 HOH HOH . N 5 HOH C 100 400 251 HOH HOH . N 5 HOH C 101 401 454 HOH HOH . N 5 HOH C 102 402 403 HOH HOH . N 5 HOH C 103 403 195 HOH HOH . N 5 HOH C 104 404 242 HOH HOH . N 5 HOH C 105 405 215 HOH HOH . N 5 HOH C 106 406 490 HOH HOH . N 5 HOH C 107 407 171 HOH HOH . N 5 HOH C 108 408 455 HOH HOH . N 5 HOH C 109 409 198 HOH HOH . N 5 HOH C 110 410 308 HOH HOH . N 5 HOH C 111 411 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 4 -13.775 -10.442 4.706 1 31.05 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . J 4 -14.233 -9.979 5.985 1 27.9 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . J 4 -12.43 -9.821 4.465 1 32.07 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . J 4 -11.842 -9.911 5.824 1 31.68 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . J 4 -11.502 -10.643 3.56 1 35.01 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . J 4 -10.136 -10.161 3.749 1 42.35 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #