data_5UN1 # _model_server_result.job_id IgaM5uQeld3dyk7CpuVswg _model_server_result.datetime_utc '2024-11-21 14:05:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5un1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1003}' # _entry.id 5UN1 # _exptl.entry_id 5UN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.44 _cell.angle_gamma 90 _cell.entry_id 5UN1 _cell.length_a 181.57 _cell.length_b 108.47 _cell.length_c 182.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,I,J,K,L,M,N,T,U,V,W 1 1 B,C,G,H,O,P,Q,R,S,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 G CYS 420 1_555 A SG CYS 59 G CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 43 G CYS 436 1_555 A SG CYS 60 G CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 341 G CYS 734 1_555 A SG CYS 395 G CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 B SG CYS 27 A CYS 420 1_555 B SG CYS 59 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 43 A CYS 436 1_555 B SG CYS 60 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 B SG CYS 341 A CYS 734 1_555 B SG CYS 395 A CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 27 B CYS 422 1_555 C SG CYS 54 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 C SG CYS 34 B CYS 429 1_555 C SG CYS 55 B CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 C SG CYS 334 B CYS 729 1_555 C SG CYS 389 B CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf10 D SG CYS 27 H CYS 422 1_555 D SG CYS 54 H CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 D SG CYS 34 H CYS 429 1_555 D SG CYS 55 H CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 D SG CYS 334 H CYS 729 1_555 D SG CYS 389 H CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 E SG CYS 27 E CYS 420 1_555 E SG CYS 59 E CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 E SG CYS 43 E CYS 436 1_555 E SG CYS 60 E CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 E SG CYS 341 E CYS 734 1_555 E SG CYS 395 E CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf16 F SG CYS 27 F CYS 422 1_555 F SG CYS 54 F CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf17 F SG CYS 34 F CYS 429 1_555 F SG CYS 55 F CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 F SG CYS 334 F CYS 729 1_555 F SG CYS 389 F CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf19 G SG CYS 27 C CYS 420 1_555 G SG CYS 59 C CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 G SG CYS 43 C CYS 436 1_555 G SG CYS 60 C CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf21 G SG CYS 341 C CYS 734 1_555 G SG CYS 395 C CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf22 H SG CYS 27 D CYS 422 1_555 H SG CYS 54 D CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 H SG CYS 34 D CYS 429 1_555 H SG CYS 55 D CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf24 H SG CYS 334 D CYS 729 1_555 H SG CYS 389 D CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 397 n n C C2 TRS sing 398 n n C C3 TRS sing 399 n n C N TRS sing 400 n n C1 O1 TRS sing 401 n n C1 H11 TRS sing 402 n n C1 H12 TRS sing 403 n n C2 O2 TRS sing 404 n n C2 H21 TRS sing 405 n n C2 H22 TRS sing 406 n n C3 O3 TRS sing 407 n n C3 H31 TRS sing 408 n n C3 H32 TRS sing 409 n n N HN1 TRS sing 410 n n N HN2 TRS sing 411 n n N HN3 TRS sing 412 n n O1 HO1 TRS sing 413 n n O2 HO2 TRS sing 414 n n O3 HO3 TRS sing 415 n n # _atom_sites.entry_id 5UN1 _atom_sites.fract_transf_matrix[1][1] 0.005508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GLY G 1 1001 1001 GLY GLY . J 4 NAG G 1 1002 1002 NAG NAG . K 5 TRS G 1 1003 1004 TRS TRS . L 6 GLU G 1 1004 1005 GLU GLU . M 7 BMK G 1 1005 1003 BMK MK . N 6 GLU G 1 1006 1004 GLU GLU . O 8 MG A 1 901 1003 MG MG . P 3 GLY A 1 902 1001 GLY GLY . Q 6 GLU B 1 1001 1001 GLU GLU . R 4 NAG B 1 1002 1002 NAG NAG . S 7 BMK B 1 1003 1003 BMK MK . T 6 GLU H 1 1001 1001 GLU GLU . U 4 NAG H 1 1002 1002 NAG NAG . V 9 Y01 E 1 1001 1001 Y01 Y01 . W 4 NAG F 1 1001 1001 NAG NAG . X 4 NAG D 1 1001 1001 NAG NAG . Y 6 GLU D 1 1002 1001 GLU GLU . Z 4 NAG D 1 1003 1002 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . K 5 0.524 -16.278 -7.739 1 24.05 ? C TRS 1003 G 1 HETATM 2 C C1 TRS . . . K 5 0.037 -14.907 -8.189 1 10.04 ? C1 TRS 1003 G 1 HETATM 3 C C2 TRS . . . K 5 -0.646 -17.231 -7.526 1 56.81 ? C2 TRS 1003 G 1 HETATM 4 C C3 TRS . . . K 5 1.363 -16.21 -6.476 1 17.96 ? C3 TRS 1003 G 1 HETATM 5 N N TRS . . . K 5 1.397 -16.803 -8.791 1 6.76 ? N TRS 1003 G 1 HETATM 6 O O1 TRS . . . K 5 -0.031 -14.014 -7.109 1 15.03 ? O1 TRS 1003 G 1 HETATM 7 O O2 TRS . . . K 5 -1.52 -17.18 -8.631 1 81.71 ? O2 TRS 1003 G 1 HETATM 8 O O3 TRS . . . K 5 2.708 -16.346 -6.872 1 21.29 ? O3 TRS 1003 G 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #