data_5UN1
#
_model_server_result.job_id            clcgvO7Ip9wKd15zNFLt4w 
_model_server_result.datetime_utc      '2024-11-21 13:44:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5un1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1005}' 
#
_entry.id    5UN1 
#
_exptl.entry_id    5UN1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.297 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5S,10R)-5-methyl-10,11-dihydro-5H-5,10-epiminodibenzo[a,d][7]annulene 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.44 
_cell.angle_gamma         90 
_cell.entry_id            5UN1 
_cell.length_a            181.57 
_cell.length_b            108.47 
_cell.length_c            182.46 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UN1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,I,J,K,L,M,N,T,U,V,W 1 1 
B,C,G,H,O,P,Q,R,S,X,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 M N N 
? 7 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 G CYS 420 1_555 A SG CYS 59 G CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 43 G CYS 436 1_555 A SG CYS 60 G CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf3 A SG CYS 341 G CYS 734 1_555 A SG CYS 395 G CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf4 B SG CYS 27 A CYS 420 1_555 B SG CYS 59 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 B SG CYS 43 A CYS 436 1_555 B SG CYS 60 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 B SG CYS 341 A CYS 734 1_555 B SG CYS 395 A CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 27 B CYS 422 1_555 C SG CYS 54 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 C SG CYS 34 B CYS 429 1_555 C SG CYS 55 B CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf9 C SG CYS 334 B CYS 729 1_555 C SG CYS 389 B CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf10 D SG CYS 27 H CYS 422 1_555 D SG CYS 54 H CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 D SG CYS 34 H CYS 429 1_555 D SG CYS 55 H CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 D SG CYS 334 H CYS 729 1_555 D SG CYS 389 H CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 E SG CYS 27 E CYS 420 1_555 E SG CYS 59 E CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 E SG CYS 43 E CYS 436 1_555 E SG CYS 60 E CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 E SG CYS 341 E CYS 734 1_555 E SG CYS 395 E CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf16 F SG CYS 27 F CYS 422 1_555 F SG CYS 54 F CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf17 F SG CYS 34 F CYS 429 1_555 F SG CYS 55 F CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 F SG CYS 334 F CYS 729 1_555 F SG CYS 389 F CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
disulf ? disulf19 G SG CYS 27 C CYS 420 1_555 G SG CYS 59 C CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf20 G SG CYS 43 C CYS 436 1_555 G SG CYS 60 C CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf21 G SG CYS 341 C CYS 734 1_555 G SG CYS 395 C CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf22 H SG CYS 27 D CYS 422 1_555 H SG CYS 54 D CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf23 H SG CYS 34 D CYS 429 1_555 H SG CYS 55 D CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf24 H SG CYS 334 D CYS 729 1_555 H SG CYS 389 D CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C16 H15 N' 
_chem_comp.formula_weight    221.297 
_chem_comp.id                BMK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5S,10R)-5-methyl-10,11-dihydro-5H-5,10-epiminodibenzo[a,d][7]annulene 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 C8 BMK doub 70 n y 
C12 C13 BMK sing 71 n y 
C8 C2 BMK sing 72 n y 
C13 C9 BMK doub 73 n y 
C2 C3 BMK doub 74 n y 
C2 C BMK sing 75 n n 
C9 C3 BMK sing 76 n y 
C7 C BMK sing 77 n n 
C3 C1 BMK sing 78 n n 
C C5 BMK sing 79 n n 
C N BMK sing 80 n n 
C10 C5 BMK doub 81 n y 
C10 C14 BMK sing 82 n y 
C5 C6 BMK sing 83 n y 
C14 C15 BMK doub 84 n y 
N C1 BMK sing 85 n n 
C1 C4 BMK sing 86 n n 
C6 C4 BMK sing 87 n n 
C6 C11 BMK doub 88 n y 
C15 C11 BMK sing 89 n y 
C7 H1 BMK sing 90 n n 
C7 H2 BMK sing 91 n n 
C7 H3 BMK sing 92 n n 
C10 H4 BMK sing 93 n n 
C14 H5 BMK sing 94 n n 
C15 H6 BMK sing 95 n n 
C11 H7 BMK sing 96 n n 
C4 H8 BMK sing 97 n n 
C4 H9 BMK sing 98 n n 
C1 H10 BMK sing 99 n n 
N H11 BMK sing 100 n n 
C9 H13 BMK sing 101 n n 
C13 H14 BMK sing 102 n n 
C12 H15 BMK sing 103 n n 
C8 H16 BMK sing 104 n n 
#
_atom_sites.entry_id                     5UN1 
_atom_sites.fract_transf_matrix[1][1]    0.005508 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002163 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009219 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005888 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GLY G 1 1001 1001 GLY GLY . 
J 4 NAG G 1 1002 1002 NAG NAG . 
K 5 TRS G 1 1003 1004 TRS TRS . 
L 6 GLU G 1 1004 1005 GLU GLU . 
M 7 BMK G 1 1005 1003 BMK MK . 
N 6 GLU G 1 1006 1004 GLU GLU . 
O 8 MG A 1 901 1003 MG MG . 
P 3 GLY A 1 902 1001 GLY GLY . 
Q 6 GLU B 1 1001 1001 GLU GLU . 
R 4 NAG B 1 1002 1002 NAG NAG . 
S 7 BMK B 1 1003 1003 BMK MK . 
T 6 GLU H 1 1001 1001 GLU GLU . 
U 4 NAG H 1 1002 1002 NAG NAG . 
V 9 Y01 E 1 1001 1001 Y01 Y01 . 
W 4 NAG F 1 1001 1001 NAG NAG . 
X 4 NAG D 1 1001 1001 NAG NAG . 
Y 6 GLU D 1 1002 1001 GLU GLU . 
Z 4 NAG D 1 1003 1002 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 BMK . . . M 7 -50.882 -15.826 -10.418 1 209.86 ? C7 BMK 1005 G 1 
HETATM 2 C C BMK . . . M 7 -51.018 -15.906 -8.903 1 185.53 ? C BMK 1005 G 1 
HETATM 3 C C5 BMK . . . M 7 -50.195 -14.922 -8.157 1 160.05 ? C5 BMK 1005 G 1 
HETATM 4 C C10 BMK . . . M 7 -49.072 -14.317 -8.702 1 142.65 ? C10 BMK 1005 G 1 
HETATM 5 C C14 BMK . . . M 7 -48.35 -13.412 -7.934 1 140.14 ? C14 BMK 1005 G 1 
HETATM 6 C C15 BMK . . . M 7 -48.735 -13.109 -6.63 1 150.05 ? C15 BMK 1005 G 1 
HETATM 7 C C11 BMK . . . M 7 -49.852 -13.699 -6.044 1 173.58 ? C11 BMK 1005 G 1 
HETATM 8 C C6 BMK . . . M 7 -50.611 -14.613 -6.763 1 178.32 ? C6 BMK 1005 G 1 
HETATM 9 C C4 BMK . . . M 7 -51.837 -15.264 -6.131 1 183.62 ? C4 BMK 1005 G 1 
HETATM 10 C C1 BMK . . . M 7 -52.493 -16.268 -7.071 1 172.48 ? C1 BMK 1005 G 1 
HETATM 11 N N BMK . . . M 7 -52.364 -15.712 -8.405 1 191.93 ? N BMK 1005 G 1 
HETATM 12 C C3 BMK . . . M 7 -51.609 -17.438 -7.205 1 155.34 ? C3 BMK 1005 G 1 
HETATM 13 C C9 BMK . . . M 7 -51.557 -18.6 -6.461 1 146.06 ? C9 BMK 1005 G 1 
HETATM 14 C C13 BMK . . . M 7 -50.595 -19.536 -6.843 1 148.5 ? C13 BMK 1005 G 1 
HETATM 15 C C12 BMK . . . M 7 -49.721 -19.334 -7.92 1 128.16 ? C12 BMK 1005 G 1 
HETATM 16 C C8 BMK . . . M 7 -49.756 -18.173 -8.688 1 139.76 ? C8 BMK 1005 G 1 
HETATM 17 C C2 BMK . . . M 7 -50.707 -17.236 -8.329 1 160.63 ? C2 BMK 1005 G 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           364 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#