data_5UNA # _model_server_result.job_id AwQskTUYUMAhDzkBD5icZA _model_server_result.datetime_utc '2024-11-05 00:53:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5una # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":701}' # _entry.id 5UNA # _exptl.entry_id 5UNA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5UNA _cell.length_a 183.24 _cell.length_b 183.24 _cell.length_c 151.39 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UNA _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 PISA monomeric 1 software_defined_assembly 5 PISA monomeric 1 software_defined_assembly 6 PISA monomeric 1 software_defined_assembly 7 PISA monomeric 1 software_defined_assembly 8 PISA monomeric 1 software_defined_assembly 9 PISA monomeric 1 software_defined_assembly 10 PISA monomeric 1 software_defined_assembly 11 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,L 1 1 B,M 2 1 C,N 3 1 D,O 4 1 E,P 5 1 F,Q 6 1 G 7 1 H 8 1 I 9 1 J 10 1 K 11 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 419 1_555 B SG CYS 22 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 C SG CYS 22 C CYS 419 1_555 D SG CYS 22 D CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 E SG CYS 22 E CYS 419 1_555 F SG CYS 22 F CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A C ARG 72 A ARG 469 1_555 A N MSE 73 A MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale2 A C MSE 73 A MSE 470 1_555 A N VAL 74 A VAL 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ARG 201 A ARG 598 1_555 A N MSE 202 A MSE 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 A C MSE 202 A MSE 599 1_555 A N PHE 203 A PHE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale5 B C ARG 72 B ARG 469 1_555 B N MSE 73 B MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale6 B C MSE 73 B MSE 470 1_555 B N VAL 74 B VAL 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 B C ARG 201 B ARG 598 1_555 B N MSE 202 B MSE 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 B C MSE 202 B MSE 599 1_555 B N PHE 203 B PHE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale9 C C ARG 72 C ARG 469 1_555 C N MSE 73 C MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale10 C C MSE 73 C MSE 470 1_555 C N VAL 74 C VAL 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale11 C C ARG 201 C ARG 598 1_555 C N MSE 202 C MSE 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale12 C C MSE 202 C MSE 599 1_555 C N PHE 203 C PHE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale13 D C ARG 72 D ARG 469 1_555 D N MSE 73 D MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 D C MSE 73 D MSE 470 1_555 D N VAL 74 D VAL 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale15 D C ARG 201 D ARG 598 1_555 D N MSE 202 D MSE 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale16 D C MSE 202 D MSE 599 1_555 D N PHE 203 D PHE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale17 E C ARG 72 E ARG 469 1_555 E N MSE 73 E MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale18 E C MSE 73 E MSE 470 1_555 E N VAL 74 E VAL 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale19 E C ARG 201 E ARG 598 1_555 E N MSE 202 E MSE 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale20 E C MSE 202 E MSE 599 1_555 E N PHE 203 E PHE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale21 F C ARG 72 F ARG 469 1_555 F N MSE 73 F MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale22 F C MSE 73 F MSE 470 1_555 F N VAL 74 F VAL 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale23 F C ARG 201 F ARG 598 1_555 F N MSE 202 F MSE 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale24 F C MSE 202 F MSE 599 1_555 F N PHE 203 F PHE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 5UNA _atom_sites.fract_transf_matrix[1][1] 0.005457 _atom_sites.fract_transf_matrix[1][2] 0.003151 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 3 SAH A 1 701 701 SAH SAH . M 3 SAH B 1 701 701 SAH SAH . N 3 SAH C 1 701 701 SAH SAH . O 3 SAH D 1 701 701 SAH SAH . P 3 SAH E 1 701 701 SAH SAH . Q 3 SAH F 1 701 701 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . P 3 7.267 59.096 39.452 1 80.5 ? N SAH 701 E 1 HETATM 2 C CA SAH . . . P 3 6.682 59.93 38.376 1 83.01 ? CA SAH 701 E 1 HETATM 3 C CB SAH . . . P 3 6.822 59.485 36.901 1 78.82 ? CB SAH 701 E 1 HETATM 4 C CG SAH . . . P 3 6.118 58.186 36.561 1 78.75 ? CG SAH 701 E 1 HETATM 5 S SD SAH . . . P 3 6.556 57.916 34.82 1 78.5 ? SD SAH 701 E 1 HETATM 6 C C SAH . . . P 3 5.195 60.121 38.613 1 89.36 ? C SAH 701 E 1 HETATM 7 O O SAH . . . P 3 4.768 61.135 37.892 1 92.2 ? O SAH 701 E 1 HETATM 8 O OXT SAH . . . P 3 4.492 59.418 39.324 1 91.24 ? OXT SAH 701 E 1 HETATM 9 C C5' SAH . . . P 3 7.958 56.772 34.96 1 70.63 ? C5' SAH 701 E 1 HETATM 10 C C4' SAH . . . P 3 9.249 57.56 35.018 1 63.5 ? C4' SAH 701 E 1 HETATM 11 O O4' SAH . . . P 3 10.323 56.746 35.528 1 65.36 ? O4' SAH 701 E 1 HETATM 12 C C3' SAH . . . P 3 9.702 58.081 33.656 1 63.04 ? C3' SAH 701 E 1 HETATM 13 O O3' SAH . . . P 3 10.012 59.467 33.676 1 62.74 ? O3' SAH 701 E 1 HETATM 14 C C2' SAH . . . P 3 10.849 57.137 33.264 1 59.28 ? C2' SAH 701 E 1 HETATM 15 O O2' SAH . . . P 3 11.852 57.751 32.478 1 55.88 ? O2' SAH 701 E 1 HETATM 16 C C1' SAH . . . P 3 11.409 56.73 34.613 1 60.75 ? C1' SAH 701 E 1 HETATM 17 N N9 SAH . . . P 3 11.995 55.395 34.626 1 55.76 ? N9 SAH 701 E 1 HETATM 18 C C8 SAH . . . P 3 11.468 54.257 34.069 1 63.57 ? C8 SAH 701 E 1 HETATM 19 N N7 SAH . . . P 3 12.119 53.161 34.376 1 63.22 ? N7 SAH 701 E 1 HETATM 20 C C5 SAH . . . P 3 13.171 53.614 35.16 1 54.65 ? C5 SAH 701 E 1 HETATM 21 C C6 SAH . . . P 3 14.244 52.948 35.784 1 55.9 ? C6 SAH 701 E 1 HETATM 22 N N6 SAH . . . P 3 14.498 51.651 35.614 1 55.61 ? N6 SAH 701 E 1 HETATM 23 N N1 SAH . . . P 3 15.078 53.684 36.564 1 57.41 ? N1 SAH 701 E 1 HETATM 24 C C2 SAH . . . P 3 14.866 55.002 36.671 1 54.71 ? C2 SAH 701 E 1 HETATM 25 N N3 SAH . . . P 3 13.923 55.748 36.081 1 56.42 ? N3 SAH 701 E 1 HETATM 26 C C4 SAH . . . P 3 13.098 54.986 35.335 1 53.66 ? C4 SAH 701 E 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #