data_5UOW # _model_server_result.job_id suW2aHMpKJIZDHKvTz5faA _model_server_result.datetime_utc '2024-10-19 20:12:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uow # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1102}' # _entry.id 5UOW # _exptl.entry_id 5UOW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.297 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S,10R)-5-methyl-10,11-dihydro-5H-5,10-epiminodibenzo[a,d][7]annulene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n G NAG 1 E 1 NAG A 1001 NAG 5 n G NAG 2 E 2 NAG A 1002 NAG 5 n H NAG 1 H 1 NAG A 1003 NAG 5 n H NAG 2 H 2 NAG A 1004 NAG 5 n I NAG 1 I 1 NAG A 1005 NAG 5 n I NAG 2 I 2 NAG A 1006 NAG 5 n J NAG 1 J 1 NAG C 1001 NAG 5 n J NAG 2 J 2 NAG C 1002 NAG 5 n K NAG 1 K 1 NAG C 1003 NAG 5 n K NAG 2 K 2 NAG C 1004 NAG 5 n L NAG 1 L 1 NAG C 1005 NAG 5 n L NAG 2 L 2 NAG C 1006 NAG 5 n M NAG 1 M 1 NAG D 1001 NAG 5 n M NAG 2 M 2 NAG D 1002 NAG 5 n N NAG 1 N 1 NAG D 1003 NAG 5 n N NAG 2 N 2 NAG D 1004 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 79 1_555 A SG CYS 286 A CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 398 A CYS 420 1_555 A SG CYS 430 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 414 A CYS 436 1_555 A SG CYS 431 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 720 A CYS 742 1_555 A SG CYS 774 A CYS 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf5 B SG CYS 79 B CYS 79 1_555 B SG CYS 312 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf6 B SG CYS 417 B CYS 417 1_555 B SG CYS 443 B CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 424 B CYS 424 1_555 B SG CYS 444 B CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 733 B CYS 733 1_555 B SG CYS 788 B CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf9 C SG CYS 57 C CYS 79 1_555 C SG CYS 286 C CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf10 C SG CYS 398 C CYS 420 1_555 C SG CYS 430 C CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 C SG CYS 414 C CYS 436 1_555 C SG CYS 431 C CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf12 C SG CYS 720 C CYS 742 1_555 C SG CYS 774 C CYS 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 D SG CYS 81 D CYS 81 1_555 D SG CYS 316 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 D SG CYS 422 D CYS 422 1_555 D SG CYS 449 D CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf15 D SG CYS 429 D CYS 429 1_555 D SG CYS 450 D CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 D SG CYS 739 D CYS 739 1_555 D SG CYS 794 D CYS 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 39 A ASN 61 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale2 A ND2 ASN 181 A ASN 203 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.546 ? covale ? covale3 A ND2 ASN 254 A ASN 276 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? covale ? covale4 A CE1 TYR 657 A TYR 679 1_555 A CD1 ILE 706 A ILE 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.532 ? covale ? covale5 A CZ TYR 657 A TYR 679 1_555 A CD1 ILE 706 A ILE 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.142 ? covale ? covale6 B SD MET 154 B MET 154 1_555 B CB ASP 158 B ASP 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? covale ? covale7 C ND2 ASN 39 C ASN 61 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale8 C ND2 ASN 181 C ASN 203 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale9 C O ASN 251 C ASN 273 1_555 C CD2 HIS 258 C HIS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale10 C ND2 ASN 254 C ASN 276 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? covale ? covale11 C CE MET 372 C MET 394 1_555 C CG PRO 743 C PRO 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? covale ? covale12 C O GLY 803 C GLY 825 1_555 C CG2 ILE 807 C ILE 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale13 D ND2 ASN 336 D ASN 336 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.547 ? covale ? covale14 D ND2 ASN 681 D ASN 681 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.546 ? covale ? covale15 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale17 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale19 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale20 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale21 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale22 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C16 H15 N' _chem_comp.formula_weight 221.297 _chem_comp.id BMK _chem_comp.mon_nstd_flag . _chem_comp.name (5S,10R)-5-methyl-10,11-dihydro-5H-5,10-epiminodibenzo[a,d][7]annulene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5UOW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 6 GLU B 1 1101 1101 GLU GLU . P 7 BMK B 1 1102 1201 BMK BMK . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 BMK . . . P 7 227.009 214.789 170.477 1 2 ? C7 BMK 1102 B 1 HETATM 2 C C BMK . . . P 7 226.9 213.62 171.449 1 2 ? C BMK 1102 B 1 HETATM 3 C C5 BMK . . . P 7 225.632 213.615 172.238 1 2 ? C5 BMK 1102 B 1 HETATM 4 C C10 BMK . . . P 7 224.855 214.753 172.396 1 2 ? C10 BMK 1102 B 1 HETATM 5 C C14 BMK . . . P 7 223.686 214.678 173.15 1 2 ? C14 BMK 1102 B 1 HETATM 6 C C15 BMK . . . P 7 223.289 213.485 173.752 1 2 ? C15 BMK 1102 B 1 HETATM 7 C C11 BMK . . . P 7 224.04 212.321 173.625 1 2 ? C11 BMK 1102 B 1 HETATM 8 C C6 BMK . . . P 7 225.216 212.341 172.887 1 2 ? C6 BMK 1102 B 1 HETATM 9 C C4 BMK . . . P 7 226.065 211.084 172.719 1 2 ? C4 BMK 1102 B 1 HETATM 10 C C1 BMK . . . P 7 227.323 211.33 171.883 1 2 ? C1 BMK 1102 B 1 HETATM 11 N N BMK . . . P 7 227.008 212.305 170.846 1 2 ? N BMK 1102 B 1 HETATM 12 C C3 BMK . . . P 7 228.259 212.133 172.686 1 2 ? C3 BMK 1102 B 1 HETATM 13 C C9 BMK . . . P 7 229.254 211.733 173.563 1 2 ? C9 BMK 1102 B 1 HETATM 14 C C13 BMK . . . P 7 229.991 212.749 174.176 1 2 ? C13 BMK 1102 B 1 HETATM 15 C C12 BMK . . . P 7 229.751 214.108 173.925 1 2 ? C12 BMK 1102 B 1 HETATM 16 C C8 BMK . . . P 7 228.757 214.535 173.043 1 2 ? C8 BMK 1102 B 1 HETATM 17 C C2 BMK . . . P 7 228.019 213.544 172.422 1 2 ? C2 BMK 1102 B 1 # _model_server_stats.io_time_ms 185 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #