data_5UP0 # _model_server_result.job_id xZ6r1Y9TEZipJ8vHSQbG6A _model_server_result.datetime_utc '2024-10-19 16:46:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5up0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5UP0 # _exptl.entry_id 5UP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UP0 _cell.length_a 87.381 _cell.length_b 87.381 _cell.length_c 135.088 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 82 A HIS 227 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A NE2 HIS 118 A HIS 263 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 A OD2 ASP 119 A ASP 264 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 A OD1 ASP 119 A ASP 264 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 A OD2 ASP 225 A ASP 370 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc6 B ZN ZN . A ZN 601 1_555 E O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 B ZN ZN . A ZN 601 1_555 E O HOH . A HOH 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc8 C MG MG . A MG 602 1_555 E O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc9 C MG MG . A MG 602 1_555 E O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc10 C MG MG . A MG 602 1_555 E O HOH . A HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc11 C MG MG . A MG 602 1_555 E O HOH . A HOH 745 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc12 C MG MG . A MG 602 1_555 E O HOH . A HOH 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5UP0 _atom_sites.fract_transf_matrix[1][1] 0.011444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 601 ZN ZN . C 3 MG A 1 602 602 MG MG . D 4 8HP A 1 603 603 8HP LIG . E 5 HOH A 1 701 684 HOH HOH . E 5 HOH A 2 702 612 HOH HOH . E 5 HOH A 3 703 610 HOH HOH . E 5 HOH A 4 704 619 HOH HOH . E 5 HOH A 5 705 662 HOH HOH . E 5 HOH A 6 706 650 HOH HOH . E 5 HOH A 7 707 683 HOH HOH . E 5 HOH A 8 708 702 HOH HOH . E 5 HOH A 9 709 640 HOH HOH . E 5 HOH A 10 710 664 HOH HOH . E 5 HOH A 11 711 674 HOH HOH . E 5 HOH A 12 712 649 HOH HOH . E 5 HOH A 13 713 634 HOH HOH . E 5 HOH A 14 714 637 HOH HOH . E 5 HOH A 15 715 706 HOH HOH . E 5 HOH A 16 716 604 HOH HOH . E 5 HOH A 17 717 688 HOH HOH . E 5 HOH A 18 718 686 HOH HOH . E 5 HOH A 19 719 628 HOH HOH . E 5 HOH A 20 720 654 HOH HOH . E 5 HOH A 21 721 642 HOH HOH . E 5 HOH A 22 722 641 HOH HOH . E 5 HOH A 23 723 616 HOH HOH . E 5 HOH A 24 724 660 HOH HOH . E 5 HOH A 25 725 608 HOH HOH . E 5 HOH A 26 726 621 HOH HOH . E 5 HOH A 27 727 620 HOH HOH . E 5 HOH A 28 728 623 HOH HOH . E 5 HOH A 29 729 667 HOH HOH . E 5 HOH A 30 730 681 HOH HOH . E 5 HOH A 31 731 695 HOH HOH . E 5 HOH A 32 732 606 HOH HOH . E 5 HOH A 33 733 703 HOH HOH . E 5 HOH A 34 734 635 HOH HOH . E 5 HOH A 35 735 627 HOH HOH . E 5 HOH A 36 736 653 HOH HOH . E 5 HOH A 37 737 615 HOH HOH . E 5 HOH A 38 738 651 HOH HOH . E 5 HOH A 39 739 638 HOH HOH . E 5 HOH A 40 740 646 HOH HOH . E 5 HOH A 41 741 663 HOH HOH . E 5 HOH A 42 742 636 HOH HOH . E 5 HOH A 43 743 666 HOH HOH . E 5 HOH A 44 744 690 HOH HOH . E 5 HOH A 45 745 605 HOH HOH . E 5 HOH A 46 746 626 HOH HOH . E 5 HOH A 47 747 697 HOH HOH . E 5 HOH A 48 748 699 HOH HOH . E 5 HOH A 49 749 632 HOH HOH . E 5 HOH A 50 750 692 HOH HOH . E 5 HOH A 51 751 630 HOH HOH . E 5 HOH A 52 752 679 HOH HOH . E 5 HOH A 53 753 655 HOH HOH . E 5 HOH A 54 754 633 HOH HOH . E 5 HOH A 55 755 687 HOH HOH . E 5 HOH A 56 756 625 HOH HOH . E 5 HOH A 57 757 675 HOH HOH . E 5 HOH A 58 758 698 HOH HOH . E 5 HOH A 59 759 708 HOH HOH . E 5 HOH A 60 760 676 HOH HOH . E 5 HOH A 61 761 693 HOH HOH . E 5 HOH A 62 762 669 HOH HOH . E 5 HOH A 63 763 624 HOH HOH . E 5 HOH A 64 764 694 HOH HOH . E 5 HOH A 65 765 696 HOH HOH . E 5 HOH A 66 766 691 HOH HOH . E 5 HOH A 67 767 629 HOH HOH . E 5 HOH A 68 768 645 HOH HOH . E 5 HOH A 69 769 677 HOH HOH . E 5 HOH A 70 770 639 HOH HOH . E 5 HOH A 71 771 659 HOH HOH . E 5 HOH A 72 772 652 HOH HOH . E 5 HOH A 73 773 668 HOH HOH . E 5 HOH A 74 774 656 HOH HOH . E 5 HOH A 75 775 611 HOH HOH . E 5 HOH A 76 776 658 HOH HOH . E 5 HOH A 77 777 673 HOH HOH . E 5 HOH A 78 778 613 HOH HOH . E 5 HOH A 79 779 707 HOH HOH . E 5 HOH A 80 780 618 HOH HOH . E 5 HOH A 81 781 647 HOH HOH . E 5 HOH A 82 782 682 HOH HOH . E 5 HOH A 83 783 607 HOH HOH . E 5 HOH A 84 784 665 HOH HOH . E 5 HOH A 85 785 704 HOH HOH . E 5 HOH A 86 786 643 HOH HOH . E 5 HOH A 87 787 657 HOH HOH . E 5 HOH A 88 788 678 HOH HOH . E 5 HOH A 89 789 670 HOH HOH . E 5 HOH A 90 790 617 HOH HOH . E 5 HOH A 91 791 680 HOH HOH . E 5 HOH A 92 792 689 HOH HOH . E 5 HOH A 93 793 672 HOH HOH . E 5 HOH A 94 794 705 HOH HOH . E 5 HOH A 95 795 644 HOH HOH . E 5 HOH A 96 796 622 HOH HOH . E 5 HOH A 97 797 609 HOH HOH . E 5 HOH A 98 798 614 HOH HOH . E 5 HOH A 99 799 700 HOH HOH . E 5 HOH A 100 800 648 HOH HOH . E 5 HOH A 101 801 701 HOH HOH . E 5 HOH A 102 802 685 HOH HOH . E 5 HOH A 103 803 661 HOH HOH . E 5 HOH A 104 804 631 HOH HOH . E 5 HOH A 105 805 671 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -18.922 _atom_site.Cartn_y -13.951 _atom_site.Cartn_z -14.828 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #