data_5UP3
#
_model_server_result.job_id            OOW38LPrutgSe4_Vy8T1nA 
_model_server_result.datetime_utc      '2024-12-26 10:19:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5up3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1000}' 
#
_entry.id    5UP3 
#
_exptl.entry_id    5UP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              319.36 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{6-[4-(propan-2-yl)-4H-1,2,4-triazol-3-yl]pyridin-2-yl}-2,3-dihydro-1H-isoindol-1-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5UP3 
_cell.length_a            78.79 
_cell.length_b            78.79 
_cell.length_c            431.367 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5UP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C18 H17 N5 O' 
_chem_comp.formula_weight    319.36 
_chem_comp.id                8GS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{6-[4-(propan-2-yl)-4H-1,2,4-triazol-3-yl]pyridin-2-yl}-2,3-dihydro-1H-isoindol-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 N7 8GS sing 1 n y 
N6 C5 8GS doub 2 n y 
N7 C8 8GS doub 3 n y 
C5 N4 8GS sing 4 n y 
C8 N4 8GS sing 5 n y 
C8 C9 8GS sing 6 n n 
N4 C2 8GS sing 7 n n 
C3 C2 8GS sing 8 n n 
C10 C9 8GS doub 9 n y 
C10 C11 8GS sing 10 n y 
C9 N14 8GS sing 11 n y 
C2 C1 8GS sing 12 n n 
C11 C12 8GS doub 13 n y 
N14 C13 8GS doub 14 n y 
C13 C12 8GS sing 15 n y 
C13 N15 8GS sing 16 n n 
C16 N15 8GS sing 17 n n 
C16 C17 8GS sing 18 n n 
N15 C23 8GS sing 19 n n 
C17 C18 8GS doub 20 n y 
C17 C22 8GS sing 21 n y 
C23 O24 8GS doub 22 n n 
C23 C22 8GS sing 23 n n 
C18 C19 8GS sing 24 n y 
C22 C21 8GS doub 25 n y 
C19 C20 8GS doub 26 n y 
C21 C20 8GS sing 27 n y 
C5 H1 8GS sing 28 n n 
C10 H2 8GS sing 29 n n 
C20 H3 8GS sing 30 n n 
C21 H4 8GS sing 31 n n 
C1 H5 8GS sing 32 n n 
C1 H6 8GS sing 33 n n 
C1 H7 8GS sing 34 n n 
C2 H8 8GS sing 35 n n 
C3 H9 8GS sing 36 n n 
C3 H10 8GS sing 37 n n 
C3 H11 8GS sing 38 n n 
C11 H12 8GS sing 39 n n 
C12 H13 8GS sing 40 n n 
C16 H14 8GS sing 41 n n 
C16 H15 8GS sing 42 n n 
C18 H16 8GS sing 43 n n 
C19 H17 8GS sing 44 n n 
#
_atom_sites.entry_id                     5UP3 
_atom_sites.fract_transf_matrix[1][1]    0.012692 
_atom_sites.fract_transf_matrix[1][2]    0.007328 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014655 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002318 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 8GS A 1 1000 1000 8GS LIG . 
D 2 8GS B 1 1000 1000 8GS LIG . 
E 3 HOH A 1 1101 1011 HOH HOH . 
E 3 HOH A 2 1102 1010 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 8GS . . . D 2 9.489 52.397 -7.914 1 54.83 ? C5 8GS 1000 B 1 
HETATM 2 C C8 8GS . . . D 2 8.643 54.392 -7.854 1 53.53 ? C8 8GS 1000 B 1 
HETATM 3 C C10 8GS . . . D 2 7.257 56.482 -8.116 1 56.71 ? C10 8GS 1000 B 1 
HETATM 4 C C13 8GS . . . D 2 9.019 57.756 -6.416 1 51.64 ? C13 8GS 1000 B 1 
HETATM 5 C C17 8GS . . . D 2 11.984 58.58 -4.302 1 41.37 ? C17 8GS 1000 B 1 
HETATM 6 C C20 8GS . . . D 2 12.897 60.732 -2.802 1 45.35 ? C20 8GS 1000 B 1 
HETATM 7 C C21 8GS . . . D 2 11.688 60.831 -3.458 1 47.81 ? C21 8GS 1000 B 1 
HETATM 8 C C22 8GS . . . D 2 11.213 59.748 -4.218 1 51.26 ? C22 8GS 1000 B 1 
HETATM 9 C C1 8GS . . . D 2 9.956 52.776 -4.957 1 49.32 ? C1 8GS 1000 B 1 
HETATM 10 C C2 8GS . . . D 2 10.32 53.837 -6.003 1 51.18 ? C2 8GS 1000 B 1 
HETATM 11 C C3 8GS . . . D 2 11.83 53.871 -6.261 1 55.23 ? C3 8GS 1000 B 1 
HETATM 12 N N4 8GS . . . D 2 9.536 53.562 -7.219 1 49.92 ? N4 8GS 1000 B 1 
HETATM 13 N N6 8GS . . . D 2 8.655 52.531 -8.909 1 51.63 ? N6 8GS 1000 B 1 
HETATM 14 N N7 8GS . . . D 2 8.159 53.713 -8.879 1 59.98 ? N7 8GS 1000 B 1 
HETATM 15 C C9 8GS . . . D 2 8.342 55.814 -7.536 1 52.98 ? C9 8GS 1000 B 1 
HETATM 16 C C11 8GS . . . D 2 7.06 57.826 -7.816 1 60.01 ? C11 8GS 1000 B 1 
HETATM 17 C C12 8GS . . . D 2 7.948 58.473 -6.957 1 49.9 ? C12 8GS 1000 B 1 
HETATM 18 N N14 8GS . . . D 2 9.171 56.479 -6.737 1 50.93 ? N14 8GS 1000 B 1 
HETATM 19 N N15 8GS . . . D 2 9.977 58.329 -5.564 1 50.36 ? N15 8GS 1000 B 1 
HETATM 20 C C16 8GS . . . D 2 11.213 57.635 -5.166 1 45.02 ? C16 8GS 1000 B 1 
HETATM 21 C C18 8GS . . . D 2 13.188 58.479 -3.64 1 40.57 ? C18 8GS 1000 B 1 
HETATM 22 C C19 8GS . . . D 2 13.642 59.563 -2.895 1 51.13 ? C19 8GS 1000 B 1 
HETATM 23 C C23 8GS . . . D 2 9.984 59.561 -5.021 1 50.64 ? C23 8GS 1000 B 1 
HETATM 24 O O24 8GS . . . D 2 9.109 60.402 -5.156 1 54.95 ? O24 8GS 1000 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           24 
#