data_5UPU # _model_server_result.job_id EAU4tadnacwAad36dn4O6Q _model_server_result.datetime_utc '2024-11-30 02:33:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5upu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5UPU # _exptl.entry_id 5UPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UPU _cell.length_a 88.614 _cell.length_b 88.614 _cell.length_c 85.056 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 208 n n P O2P IMP sing 209 n n P O3P IMP sing 210 n n P O5' IMP sing 211 n n O2P HOP2 IMP sing 212 n n O3P HOP3 IMP sing 213 n n O5' C5' IMP sing 214 n n C5' C4' IMP sing 215 n n C5' "H5'1" IMP sing 216 n n C5' "H5'2" IMP sing 217 n n C4' O4' IMP sing 218 n n C4' C3' IMP sing 219 n n C4' H4' IMP sing 220 n n O4' C1' IMP sing 221 n n C3' O3' IMP sing 222 n n C3' C2' IMP sing 223 n n C3' H3' IMP sing 224 n n O3' HO3' IMP sing 225 n n C2' O2' IMP sing 226 n n C2' C1' IMP sing 227 n n C2' H2' IMP sing 228 n n O2' HO2' IMP sing 229 n n C1' N9 IMP sing 230 n n C1' H1' IMP sing 231 n n N9 C8 IMP sing 232 n y N9 C4 IMP sing 233 n y C8 N7 IMP doub 234 n y C8 H8 IMP sing 235 n n N7 C5 IMP sing 236 n y C5 C6 IMP sing 237 n n C5 C4 IMP doub 238 n y C6 O6 IMP doub 239 n n C6 N1 IMP sing 240 n n N1 C2 IMP sing 241 n n N1 HN1 IMP sing 242 n n C2 N3 IMP doub 243 n n C2 H2 IMP sing 244 n n N3 C4 IMP sing 245 n n # _atom_sites.entry_id 5UPU _atom_sites.fract_transf_matrix[1][1] 0.011285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 601 550 IMP IMP . C 3 6Q9 A 1 602 551 6Q9 TBK . D 4 HOH A 1 701 2 HOH HOH . D 4 HOH A 2 702 3 HOH HOH . D 4 HOH A 3 703 1 HOH HOH . D 4 HOH A 4 704 5 HOH HOH . D 4 HOH A 5 705 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 -19.422 -11.35 -5.537 1 49.62 ? P IMP 601 A 1 HETATM 2 O O1P IMP . . . B 2 -19.596 -10.964 -6.986 1 56.66 ? O1P IMP 601 A 1 HETATM 3 O O2P IMP . . . B 2 -18.115 -11.016 -4.859 1 53.08 ? O2P IMP 601 A 1 HETATM 4 O O3P IMP . . . B 2 -19.651 -12.837 -5.412 1 53.91 ? O3P IMP 601 A 1 HETATM 5 O O5' IMP . . . B 2 -20.565 -10.592 -4.728 1 56.44 ? O5' IMP 601 A 1 HETATM 6 C C5' IMP . . . B 2 -21.937 -10.857 -4.979 1 53.97 ? C5' IMP 601 A 1 HETATM 7 C C4' IMP . . . B 2 -22.809 -10.326 -3.87 1 60 ? C4' IMP 601 A 1 HETATM 8 O O4' IMP . . . B 2 -22.816 -8.877 -3.905 1 72.42 ? O4' IMP 601 A 1 HETATM 9 C C3' IMP . . . B 2 -24.28 -10.704 -3.938 1 61.01 ? C3' IMP 601 A 1 HETATM 10 O O3' IMP . . . B 2 -24.541 -12.004 -3.44 1 65.73 ? O3' IMP 601 A 1 HETATM 11 C C2' IMP . . . B 2 -24.949 -9.595 -3.134 1 54.29 ? C2' IMP 601 A 1 HETATM 12 O O2' IMP . . . B 2 -24.836 -9.844 -1.741 1 52.78 ? O2' IMP 601 A 1 HETATM 13 C C1' IMP . . . B 2 -24.073 -8.389 -3.483 1 69.81 ? C1' IMP 601 A 1 HETATM 14 N N9 IMP . . . B 2 -24.658 -7.569 -4.561 1 66.96 ? N9 IMP 601 A 1 HETATM 15 C C8 IMP . . . B 2 -25.319 -8.017 -5.676 1 57.48 ? C8 IMP 601 A 1 HETATM 16 N N7 IMP . . . B 2 -25.695 -6.95 -6.414 1 58.65 ? N7 IMP 601 A 1 HETATM 17 C C5 IMP . . . B 2 -25.279 -5.825 -5.794 1 67.95 ? C5 IMP 601 A 1 HETATM 18 C C6 IMP . . . B 2 -25.399 -4.48 -6.119 1 71.1 ? C6 IMP 601 A 1 HETATM 19 O O6 IMP . . . B 2 -25.815 -4.154 -7.23 1 63.47 ? O6 IMP 601 A 1 HETATM 20 N N1 IMP . . . B 2 -24.865 -3.526 -5.277 1 72.31 ? N1 IMP 601 A 1 HETATM 21 C C2 IMP . . . B 2 -24.218 -3.915 -4.122 1 70.72 ? C2 IMP 601 A 1 HETATM 22 N N3 IMP . . . B 2 -24.103 -5.255 -3.806 1 66.11 ? N3 IMP 601 A 1 HETATM 23 C C4 IMP . . . B 2 -24.625 -6.198 -4.628 1 67.5 ? C4 IMP 601 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #